Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

1270521 .. 1270763

Gene Structure 243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG016300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGATCAATTTGAGAAAGCTGTTGGATGAATGGAGAGCTGCTGTGGATTCTGAGTCAAGAAACTCAAGTCAGTCGAAATTAATGCTGACAATGGCTGTTAAATATGTGCCATCTTTTGGATCAATGACTTATCCGATTGAGTCTATGAAGAAGAACTTGGATTTTGCACATGCGGTGGCGTATGACTATCATCTGCCTTTGAAGGAAAATGTTACTGGCCGGTGCTCATGCTGCTCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

80

Amino Acids

9.09

Weight (kDa)

8.5

Isoelectric Point (pI)

48.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	3 - 73	1e-07	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	116
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	1 cut(s)	127
AcoI	YGGCCR	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	2 cut(s)	19, 38
AluI	AGCT	2 cut(s)	19, 38
Alw21I	GWGCWC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	38, 231
AseI	ATTAAT	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	25, 218
BccI	CCATC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BclI	TGATCA	1 cut(s)	3
BisI	GCNGC	2 cut(s)	39, 232
BlsI	GCNGC	2 cut(s)	40, 233
BpuEI	CTTGAG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	25, 218
BshFI	GGCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	116
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	3, 119
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	219
BssMI	GATC	2 cut(s)	3, 119
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	6, 122
BstMBI	GATC	2 cut(s)	3, 119
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	25, 218
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	219
CviAII	CATG	2 cut(s)	170, 228
CviJI	RGCY	4 cut(s)	19, 38, 95, 219
CviKI_1	RGCY	4 cut(s)	19, 38, 95, 219
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	5, 121
DpnII	GATC	2 cut(s)	3, 119
EaeI	YGGCCR	1 cut(s)	217
FaeI	CATG	2 cut(s)	173, 231
FaiI	YATR	7 cut(s)	105, 146, 171, 183, 229, 239, 241
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	2 cut(s)	169, 227
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	39, 232
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	39, 232
GluI	GCNGC	2 cut(s)	39, 232
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	220
Hin1II	CATG	2 cut(s)	173, 231
HinfI	GANTC	3 cut(s)	47, 53, 140
HpaII	CCGG	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	52, 135
Hpy188III	TCNNGA	1 cut(s)	57
HpyAV	CCTTC	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	173, 231
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 119
LpnPI	CCDG	2 cut(s)	201, 233
Lsp1109I	GCAGC	2 cut(s)	25, 218
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	5, 121
MboI	GATC	2 cut(s)	3, 119
MboII	GAAGA	2 cut(s)	160, 163
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	2 cut(s)	7, 77
MlyI	GAGTC	2 cut(s)	62, 149
MseI	TTAA	2 cut(s)	80, 99
MspI	CCGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	2 cut(s)	3, 119
NlaIII	CATG	2 cut(s)	173, 231
NspI	RCATGY	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	40, 233
PleI	GAGTC	2 cut(s)	61, 148
PpsI	GAGTC	2 cut(s)	61, 148
PshBI	ATTAAT	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	80, 99
SatI	GCNGC	2 cut(s)	39, 232
Sau3AI	GATC	2 cut(s)	3, 119
SchI	GAGTC	2 cut(s)	62, 149
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	2 cut(s)	21, 40
SgeI	CNNG	6 cut(s)	69, 78, 169, 182, 228, 232
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	7, 77
SsiI	CCGC	1 cut(s)	173
TaqI	TCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	7, 77
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	2 cut(s)	80, 99
Tru9I	TTAA	2 cut(s)	80, 99
TseI	GCWGC	2 cut(s)	38, 231
TspDTI	ATGAA	2 cut(s)	42, 161
Van91I	CCANNNNNTGG	1 cut(s)	116
VspI	ATTAAT	1 cut(s)	80
XceI	RCATGY	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.