Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

697349 .. 699456

Gene Structure 2108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01365.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGTCCTATAAGCACATCAAATGGTTCATTAAGACATATGGTGGAGTTCCCATGTACAATGACACTTATGTAATGAACTACTGCACAATTCGGTCAAGTTGGTTTGATTTTGATGATGTGGAGGCTATCAGCGCGAAAGTTTCGTATGCTAAAGAGATGGGGCTTCTTGGCTACAGTGTGTTTCAAGTTGGCAATGATGACAATTGGGTGCTCTCTAGGGCTGCAGCTGAAGAGGAAGGAGGTCGACAGAACAAGAAACAGTTATTGGTGATTGTTCTGGTCACGATTTCTATGTTTATTATCCTACTGGGAACTATAATGTGTTACATGCAAAGGAGAGTACTTAAGTCAATTGATATAGTTCCAAGTACAGACAGTTTTGACAGCAATGCTCCTAAACTGCAAGTTTTTAGTTTTGCAACCATCAAAGCAGCTACAAATAACTTTTCGAGTAAGAATAAGCTTGGAGAGGGTGGCTTTGGACCTGTATACAAGGGTACGTTAAGGAAGGGCCAGCAAATAGCAGTGAAAAGACTTTCAAAAACTTCACACCAAGGCCTTGAAGAGTTTGAAAATGAGGTCACACTTACTGCAACACTGCACCATGTGAATCTAGTTAGAGTTCTGGGATATTGCACCAAGAGGGAAGAAAAGATGCTGATATATGAGTACATGCCAAACAAAAGCTTGTATCACTACCTCTTTGATCCAAGTAGATGCGATCTTTTGCATTGGGAGCAACGTGTCCACATCATTGAAGGGTTAATTCAAGGGCTTCTATATCTCCAAGAATACTCAAACTCTACAATAATTCACCGTGATCTGAAATCTAGCAACATTTTGTTAGATGATAAGATGAACCCGAAAATATCAGATTTTGGTCTAGCCAGAGCTTTCGGAAAGAATGAACATGAGGCAAACACTGGTCGCATTGTTGGAACATATGGCTATGTTCCCCCTGAATATGTAAGAAGAGGCATTTATTCCATGAAATTTGATGTTTACAGCTTCGGTGTTCTGCTTCTGCAAATCATAAGTGGCAAGAGAAGTTCATGCTTTTATGGCATAGATGGAAATCTAAACCTTCTAGATCACGCATACGAGTTGTGGAAAAAAGGCCAAGGCATGGATTTTGTAGATTCTACCCTAGATGATTCGACATCGTCTTGCAAGCTCTTAAGATGCATGGGGGTAGCCTTGTTATGTGTCCAAGAAAATCCAGTAGATAGACCATCCATGCTGGAGGTTTCTTCAATGCTCAAGAGCGAAAGTGCAGCCATCATTAGTCCTAAAAAGCCTGCTTTCTCAGTTCAGGAGGATGAAGATGAGGATCATATATGCACACAGGGGGAAGAAATCTATTCAGTCAATGATGCAACAATGTCTGAAATTGTGGCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

468

Amino Acids

52.9

Weight (kDa)

6.16

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	2 - 66	1e-05	Glycosyl hydrolases family 18
Pkinase	PF00069	150 - 415	2.3e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	151 - 419	1.5e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1126
AccI	GTMKAC	2 cut(s)	244, 489
AccII	CGCG	1 cut(s)	134
AclWI	GGATC	2 cut(s)	701, 1338
AcsI	RAATTY	1 cut(s)	992
AcuI	CTGAAG	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	607
AfaI	GTAC	5 cut(s)	56, 342, 370, 499, 671
AfiI	CCNNNNNNNGG	1 cut(s)	1126
AflII	CTTAAG	2 cut(s)	344, 1177
AflIII	ACRYGT	1 cut(s)	742
AgsI	TTSAA	7 cut(s)	185, 540, 563, 572, 758, 770, 1254
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	7 cut(s)	227, 434, 463, 687, 893, 1008, 1174
AluI	AGCT	7 cut(s)	227, 434, 463, 687, 893, 1008, 1174
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	701, 1338
AoxI	GGCC	4 cut(s)	511, 556, 1117, 1395
ApeKI	GCWGC	4 cut(s)	221, 224, 431, 1274
ApoI	RAATTY	1 cut(s)	992
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	3 cut(s)	482, 511, 1396
AsuHPI	GGTGA	2 cut(s)	280, 806
AvaII	GGWCC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	4 cut(s)	208, 236, 443, 1286
BccI	CCATC	5 cut(s)	151, 431, 1064, 1240, 1286
BfaI	CTAG	6 cut(s)	216, 614, 831, 884, 1088, 1148
BfmI	CTRYAG	2 cut(s)	172, 222
BfrI	CTTAAG	2 cut(s)	344, 1177
BisI	GCNGC	4 cut(s)	222, 225, 432, 1275
BlsI	GCNGC	4 cut(s)	223, 226, 433, 1276
BmcAI	AGTACT	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	3 cut(s)	482, 511, 1396
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	4 cut(s)	645, 707, 1172, 1363
BmuI	ACTGGG	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	1262
BpuEI	CTTGAG	1 cut(s)	1244
BsaBI	GATNNNNATC	2 cut(s)	1074, 1329
BsaJI	CCNNGG	2 cut(s)	553, 1120
Bsc4I	CCNNNNNNNGG	1 cut(s)	1126
Bse1I	ACTGG	3 cut(s)	312, 928, 1220
Bse3DI	GCAATG	2 cut(s)	199, 394
Bse8I	GATNNNNATC	2 cut(s)	1074, 1329
BseDI	CCNNGG	2 cut(s)	553, 1120
BseGI	GGATG	2 cut(s)	1232, 1324
BseJI	GATNNNNATC	2 cut(s)	1074, 1329
BseLI	CCNNNNNNNGG	1 cut(s)	1126
BseMI	GCAATG	2 cut(s)	199, 394
BseMII	CTCAG	1 cut(s)	1320
BseNI	ACTGG	3 cut(s)	312, 928, 1220
BseXI	GCAGC	4 cut(s)	208, 236, 443, 1286
BsgI	GTGCAG	3 cut(s)	67, 584, 1293
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	4 cut(s)	513, 558, 1119, 1397
BsiHKAI	GWGCWC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	1126
BsnI	GGCC	4 cut(s)	513, 558, 1119, 1397
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	5 cut(s)	706, 721, 820, 1090, 1330
BspANI	GGCC	4 cut(s)	513, 558, 1119, 1397
BspCNI	CTCAG	1 cut(s)	1319
BspFNI	CGCG	1 cut(s)	134
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	2 cut(s)	701, 1338
BspTI	CTTAAG	2 cut(s)	344, 1177
BsrDI	GCAATG	2 cut(s)	199, 394
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	3 cut(s)	312, 928, 1220
BssECI	CCNNGG	2 cut(s)	553, 1120
BssMI	GATC	5 cut(s)	706, 721, 820, 1090, 1330
BssNAI	GTATAC	1 cut(s)	490
BssT1I	CCWWGG	2 cut(s)	553, 1120
Bst1107I	GTATAC	1 cut(s)	490
Bst4CI	ACNGT	4 cut(s)	176, 261, 377, 818
Bst6I	CTCTTC	3 cut(s)	225, 558, 967
BstAFI	CTTAAG	2 cut(s)	344, 1177
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	515, 1172, 1299
BstDEI	CTNAG	1 cut(s)	1306
BstF5I	GGATG	2 cut(s)	1232, 1324
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	5 cut(s)	709, 724, 823, 1093, 1333
BstMBI	GATC	5 cut(s)	706, 721, 820, 1090, 1330
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 736, 1062
BstNSI	RCATGY	2 cut(s)	331, 676
BstSFI	CTRYAG	2 cut(s)	172, 222
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	4 cut(s)	208, 236, 443, 1286
BstZ17I	GTATAC	1 cut(s)	490
BsuRI	GGCC	4 cut(s)	513, 558, 1119, 1397
BtsCI	GGATG	2 cut(s)	1232, 1324
BtsI	GCAGTG	2 cut(s)	531, 596
BtsIMutI	CAGTG	4 cut(s)	181, 531, 596, 921
Cac8I	GCNNGC	3 cut(s)	515, 1172, 1299
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	482, 511, 1396
Csp6I	GTAC	5 cut(s)	55, 341, 369, 498, 670
CviQI	GTAC	5 cut(s)	55, 341, 369, 498, 670
DdeI	CTNAG	1 cut(s)	1306
DpnI	GATC	5 cut(s)	708, 723, 822, 1092, 1332
DpnII	GATC	5 cut(s)	706, 721, 820, 1090, 1330
DraIII	CACNNNGTG	1 cut(s)	607
Eam1104I	CTCTTC	3 cut(s)	225, 558, 967
EarI	CTCTTC	3 cut(s)	225, 558, 967
Eco130I	CCWWGG	2 cut(s)	553, 1120
Eco147I	AGGCCT	1 cut(s)	558
Eco47I	GGWCC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	249
EcoT14I	CCWWGG	2 cut(s)	553, 1120
EcoT22I	ATGCAT	1 cut(s)	1187
ErhI	CCWWGG	2 cut(s)	553, 1120
FauNDI	CATATG	2 cut(s)	37, 943
FblI	GTMKAC	2 cut(s)	244, 489
Fnu4HI	GCNGC	4 cut(s)	222, 225, 432, 1275
FokI	GGATG	2 cut(s)	1219, 1331
Fsp4HI	GCNGC	4 cut(s)	222, 225, 432, 1275
FspBI	CTAG	6 cut(s)	216, 614, 831, 884, 1088, 1148
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	4 cut(s)	222, 225, 432, 1275
GsuI	CTGGAG	1 cut(s)	1262
HaeIII	GGCC	4 cut(s)	513, 558, 1119, 1397
HhaI	GCGC	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HindIII	AAGCTT	2 cut(s)	461, 685
HinfI	GANTC	3 cut(s)	610, 1139, 1154
HphI	GGTGA	2 cut(s)	280, 806
Hpy166II	GTNNAC	4 cut(s)	245, 490, 748, 1003
Hpy188I	TCNGA	4 cut(s)	825, 874, 899, 1387
Hpy188III	TCNNGA	4 cut(s)	283, 1088, 1261, 1313
Hpy8I	GTNNAC	4 cut(s)	245, 490, 748, 1003
HpyAV	CCTTC	4 cut(s)	230, 502, 752, 1094
HpyCH4III	ACNGT	4 cut(s)	176, 261, 377, 818
HpyCH4IV	ACGT	2 cut(s)	500, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 736, 1062
HpyF3I	CTNAG	1 cut(s)	1306
HpySE526I	ACGT	2 cut(s)	500, 742
HspAI	GCGC	1 cut(s)	132
Kzo9I	GATC	5 cut(s)	706, 721, 820, 1090, 1330
LmnI	GCTCC	2 cut(s)	397, 736
Lsp1109I	GCAGC	4 cut(s)	208, 236, 443, 1286
LweI	GCATC	4 cut(s)	645, 707, 1172, 1363
MaeI	CTAG	6 cut(s)	216, 614, 831, 884, 1088, 1148
MaeII	ACGT	2 cut(s)	500, 742
MaeIII	GTNAC	3 cut(s)	280, 323, 580
MalI	GATC	5 cut(s)	708, 723, 822, 1092, 1332
MboI	GATC	5 cut(s)	706, 721, 820, 1090, 1330
MboII	GAAGA	7 cut(s)	242, 575, 659, 984, 1242, 1334, 1364
MfeI	CAATTG	2 cut(s)	202, 351
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	7 cut(s)	87, 202, 351, 765, 810, 992, 1389
MmeI	TCCRAC	1 cut(s)	916
Mph1103I	ATGCAT	1 cut(s)	1187
MseI	TTAA	5 cut(s)	30, 345, 503, 764, 1178
MspA1I	CMGCKG	1 cut(s)	227
MspCI	CTTAAG	2 cut(s)	344, 1177
MunI	CAATTG	2 cut(s)	202, 351
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	131, 736, 1062
NdeI	CATATG	2 cut(s)	37, 943
NdeII	GATC	5 cut(s)	706, 721, 820, 1090, 1330
NmuCI	GTSAC	2 cut(s)	280, 580
NsiI	ATGCAT	1 cut(s)	1187
NspI	RCATGY	2 cut(s)	331, 676
PceI	AGGCCT	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	610, 1139, 1154
PflFI	GACNNNGTC	1 cut(s)	1162
PflMI	CCANNNNNTGG	1 cut(s)	1126
PkrI	GCNGC	4 cut(s)	223, 226, 433, 1276
PspPI	GGNCC	3 cut(s)	482, 511, 1396
PstI	CTGCAG	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	1162
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	5 cut(s)	56, 342, 370, 499, 671
RsaNI	GTAC	5 cut(s)	55, 341, 369, 498, 670
SalI	GTCGAC	1 cut(s)	243
SaqAI	TTAA	5 cut(s)	30, 345, 503, 764, 1178
SatI	GCNGC	4 cut(s)	222, 225, 432, 1275
Sau3AI	GATC	5 cut(s)	706, 721, 820, 1090, 1330
Sau96I	GGNCC	3 cut(s)	482, 511, 1396
ScaI	AGTACT	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	4 cut(s)	645, 707, 1172, 1363
SfcI	CTRYAG	2 cut(s)	172, 222
SinI	GGWCC	1 cut(s)	482
SmlI	CTYRAG	3 cut(s)	344, 1177, 1259
SmoI	CTYRAG	3 cut(s)	344, 1177, 1259
Sse9I	AATT	7 cut(s)	87, 202, 351, 765, 810, 992, 1389
SseBI	AGGCCT	1 cut(s)	558
SspMI	CTAG	6 cut(s)	216, 614, 831, 884, 1088, 1148
StuI	AGGCCT	1 cut(s)	558
StyI	CCWWGG	2 cut(s)	553, 1120
TaaI	ACNGT	4 cut(s)	176, 261, 377, 818
TaiI	ACGT	2 cut(s)	503, 745
TaqI	TCGA	3 cut(s)	244, 449, 1157
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	7 cut(s)	87, 202, 351, 765, 810, 992, 1389
TatI	WGTACW	4 cut(s)	54, 340, 368, 669
TfiI	GAWTC	3 cut(s)	610, 1139, 1154
Tru1I	TTAA	5 cut(s)	30, 345, 503, 764, 1178
Tru9I	TTAA	5 cut(s)	30, 345, 503, 764, 1178
TscAI	CASTG	4 cut(s)	181, 531, 603, 928
TseFI	GTSAC	2 cut(s)	280, 580
TseI	GCWGC	4 cut(s)	221, 224, 431, 1274
Tsp45I	GTSAC	2 cut(s)	280, 580
TspDTI	ATGAA	7 cut(s)	16, 89, 872, 921, 1004, 1041, 1335
TspRI	CASTG	4 cut(s)	181, 531, 603, 928
Tth111I	GACNNNGTC	1 cut(s)	1162
Van91I	CCANNNNNTGG	1 cut(s)	1126
Vha464I	CTTAAG	2 cut(s)	344, 1177
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	1 cut(s)	992
XbaI	TCTAGA	1 cut(s)	1087
XceI	RCATGY	2 cut(s)	331, 676
XmiI	GTMKAC	2 cut(s)	244, 489
XspI	CTAG	6 cut(s)	216, 614, 831, 884, 1088, 1148
ZrmI	AGTACT	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.