Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

1413891 .. 1415659

Gene Structure 1769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46182

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGTGTTACCTACAAGGGAGAGTACTCAAGTCAATTGGTAATCTTCTTAAGACTGAACATGTGTATTTATATGTTGAGTCACTGTTATTTTCGATGTTTGTTCTCTGGCTAAGCGTTGGGCAAAAAAAAATTTCTAATTTGTTCTTTGTTCTGTTTTTGCTTAGGGATTATAGACAACATCAAAAGATCAGTTTACAGGCTATTGAATATAGTTCCAGGTACAGACAGTTTTCACAGCAATGCTCCTGTTATACAACCATCAAGGAGGCTACAAATAACTTTTCGAGTCAGAATAAGCTTGGAGAGGGTGGCTTTGGACCTGTATACAAGGGTACATTAAGGAAGGGTCAGCAAATAGCAGTGAAAAGACTCTCGAAAACTTCAAACCAAGGCCTTGAAGAGTTTCAAAATGAGGTTACACTTACTGCAACACTGCACCATGTGAATCTAGTTAGAGTTCTGGGATACTGCACCAAGTGGCAAGAAAAGATGCTGATATATGAGTACATGCCAAACAAAAGCTTGGATCACTACCTCTTTAATCCAAGTAGACACAATCTTTTGGATTGGGAGCAACGTGTCCACATCATTGAAGGGGTAATTCAAGGGCTTCTATATCTCCAAGAATACTCGAACTCTACAATAATTCACCGTGATCTGAAAGCAAGCAACATTCTGTTAGATGATGAGATGAACCCGAAAATATCAGATTTTGGTCTAGCCAGAGCTTTCAGAAAGAGTGAACATGAGGCAAACACTGGTCGCATTGTAGGAACATATGGCTATGTTCCCCCTGAATATGTAAGAAGAGGCATTTATTCCATGAAATACGATGTTTACAGCTTCGGTGTTCTGCTTCTGCAAATCATAAGTGGCAAGAGAAGTTCATGTTTTTATGGCTTAGATGGAAATTTAAACATTCTAGAACACGAGTTGTGGAGAGAAGGCCAAGGCATGGATTTCATAGATCCAACCCTAGATGATTCGACCTCGTCTTGCAAGCTCTTAAGATGCATGGAAGTAGCCTTGTTATGTGTCCAAGAAAATCCAGTAGATAGACCATCCATGCTGGAGGTTTCTTCGATGCTTAAGAGCGAAAGTGCAGTCGTCATTAGTCCTAAAAAGCCTGCTTTCTCAGTTCAGAAGGATGAAGATGAGGATCATATATATAAATTCAGGGAAGAAATCTATTCAGTCAATGATGCAACAATGTCCGAAATTGTGCCCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

410

Amino Acids

47.35

Weight (kDa)

7.15

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	95 - 359	2.9e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	96 - 362	6.6e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	955
AccI	GTMKAC	2 cut(s)	324, 550
AclWI	GGATC	3 cut(s)	534, 962, 1167
AcsI	RAATTY	3 cut(s)	129, 910, 1172
AdeI	CACNNNGTG	2 cut(s)	442, 477
AfaI	GTAC	4 cut(s)	24, 221, 334, 506
AfiI	CCNNNNNNNGG	1 cut(s)	955
AflII	CTTAAG	3 cut(s)	47, 1006, 1088
AflIII	ACRYGT	2 cut(s)	58, 577
AgsI	TTSAA	6 cut(s)	206, 384, 398, 407, 593, 605
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	5 cut(s)	298, 522, 728, 843, 1003
AluI	AGCT	5 cut(s)	298, 522, 728, 843, 1003
AlwI	GGATC	3 cut(s)	534, 962, 1167
AoxI	GGCC	2 cut(s)	391, 946
ApoI	RAATTY	3 cut(s)	129, 910, 1172
ArsI	GACNNNNNNTTYG	2 cut(s)	1089, 1121
Asp700I	GAANNNNTTC	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	1228
AsuHPI	GGTGA	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	1227
BauI	CACGAG	1 cut(s)	929
BccI	CCATC	3 cut(s)	266, 899, 1069
BciT130I	CCWGG	1 cut(s)	217
BciVI	GTATCC	1 cut(s)	458
BcnI	CCSGG	1 cut(s)	1228
BfaI	CTAG	4 cut(s)	449, 719, 923, 977
BfrI	CTTAAG	3 cut(s)	47, 1006, 1088
BfuI	GTATCC	1 cut(s)	458
BlpI	GCTNAGC	1 cut(s)	110
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	217, 1228
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmrFI	CCNGG	2 cut(s)	217, 1228
BmsI	GCATC	4 cut(s)	480, 1001, 1074, 1192
BpmI	CTGGAG	1 cut(s)	1091
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	1228
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaJI	CCNNGG	3 cut(s)	388, 949, 1226
Bsc4I	CCNNNNNNNGG	1 cut(s)	955
Bse1I	ACTGG	2 cut(s)	763, 1049
Bse3DI	GCAATG	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	1158
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	388, 949, 1226
BseGI	GGATG	2 cut(s)	1061, 1153
BseJI	GATNNNNATC	1 cut(s)	1158
BseLI	CCNNNNNNNGG	1 cut(s)	955
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	1149
BseNI	ACTGG	2 cut(s)	763, 1049
BseSI	GKGCMC	1 cut(s)	1227
BsgI	GTGCAG	3 cut(s)	419, 454, 1122
BshFI	GGCC	2 cut(s)	393, 948
BsiSI	CCGG	1 cut(s)	1228
BslI	CCNNNNNNNGG	1 cut(s)	955
BsnI	GGCC	2 cut(s)	393, 948
Bsp1286I	GDGCHC	1 cut(s)	1227
Bsp143I	GATC	5 cut(s)	186, 526, 655, 967, 1159
Bsp1720I	GCTNAGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	393, 948
BspCNI	CTCAG	1 cut(s)	1148
BspPI	GGATC	3 cut(s)	534, 962, 1167
BspTI	CTTAAG	3 cut(s)	47, 1006, 1088
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	763, 1049
BssECI	CCNNGG	3 cut(s)	388, 949, 1226
BssMI	GATC	5 cut(s)	186, 526, 655, 967, 1159
BssNAI	GTATAC	1 cut(s)	325
BssSI	CACGAG	1 cut(s)	929
BssT1I	CCWWGG	2 cut(s)	388, 949
Bst1107I	GTATAC	1 cut(s)	325
Bst2BI	CACGAG	1 cut(s)	929
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	3 cut(s)	84, 228, 653
Bst6I	CTCTTC	2 cut(s)	393, 802
BstAFI	CTTAAG	3 cut(s)	47, 1006, 1088
BstC8I	GCNNGC	3 cut(s)	667, 1001, 1128
BstDEI	CTNAG	4 cut(s)	110, 161, 901, 1135
BstF5I	GGATG	2 cut(s)	1061, 1153
BstKTI	GATC	5 cut(s)	189, 529, 658, 970, 1162
BstMBI	GATC	5 cut(s)	186, 526, 655, 967, 1159
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	2 cut(s)	62, 511
BstSCI	CCNGG	2 cut(s)	215, 1226
BstSLI	GKGCMC	1 cut(s)	1227
BstX2I	RGATCY	1 cut(s)	967
BstYI	RGATCY	1 cut(s)	967
BstZ17I	GTATAC	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	393, 948
BtsCI	GGATG	2 cut(s)	1061, 1153
BtsI	GCAGTG	2 cut(s)	366, 431
BtsIMutI	CAGTG	4 cut(s)	80, 366, 431, 756
Cac8I	GCNNGC	3 cut(s)	667, 1001, 1128
Cfr13I	GGNCC	1 cut(s)	317
Csp6I	GTAC	4 cut(s)	23, 220, 333, 505
CviAII	CATG	9 cut(s)	59, 440, 508, 746, 823, 888, 955, 1015, 1066
CviQI	GTAC	4 cut(s)	23, 220, 333, 505
DdeI	CTNAG	4 cut(s)	110, 161, 901, 1135
DpnI	GATC	5 cut(s)	188, 528, 657, 969, 1161
DpnII	GATC	5 cut(s)	186, 526, 655, 967, 1159
DraI	TTTAAA	1 cut(s)	915
DraIII	CACNNNGTG	2 cut(s)	442, 477
Eam1104I	CTCTTC	2 cut(s)	393, 802
EarI	CTCTTC	2 cut(s)	393, 802
Eco130I	CCWWGG	2 cut(s)	388, 949
Eco147I	AGGCCT	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	388, 949
EcoT22I	ATGCAT	1 cut(s)	1016
ErhI	CCWWGG	2 cut(s)	388, 949
FaeI	CATG	9 cut(s)	62, 443, 511, 749, 826, 891, 958, 1018, 1069
FatI	CATG	9 cut(s)	58, 439, 507, 745, 822, 887, 954, 1014, 1065
FauNDI	CATATG	1 cut(s)	778
FblI	GTMKAC	2 cut(s)	324, 550
FokI	GGATG	2 cut(s)	1048, 1160
FspBI	CTAG	4 cut(s)	449, 719, 923, 977
GsuI	CTGGAG	1 cut(s)	1091
HaeIII	GGCC	2 cut(s)	393, 948
HapII	CCGG	1 cut(s)	1228
Hin1II	CATG	9 cut(s)	62, 443, 511, 749, 826, 891, 958, 1018, 1069
HindIII	AAGCTT	2 cut(s)	296, 520
HinfI	GANTC	5 cut(s)	77, 286, 369, 445, 983
HpaII	CCGG	1 cut(s)	1228
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	6 cut(s)	194, 325, 551, 583, 743, 838
Hpy188I	TCNGA	6 cut(s)	291, 660, 709, 734, 1143, 1216
Hpy188III	TCNNGA	2 cut(s)	373, 923
Hpy8I	GTNNAC	6 cut(s)	194, 325, 551, 583, 743, 838
HpyAV	CCTTC	4 cut(s)	337, 587, 938, 1138
HpyCH4III	ACNGT	3 cut(s)	84, 228, 653
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	8 cut(s)	428, 436, 471, 862, 999, 1014, 1103, 1205
HpyF3I	CTNAG	4 cut(s)	110, 161, 901, 1135
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	9 cut(s)	62, 443, 511, 749, 826, 891, 958, 1018, 1069
Kzo9I	GATC	5 cut(s)	186, 526, 655, 967, 1159
LmnI	GCTCC	2 cut(s)	248, 571
LweI	GCATC	4 cut(s)	480, 1001, 1074, 1192
MaeI	CTAG	4 cut(s)	449, 719, 923, 977
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	3 cut(s)	5, 78, 415
MalI	GATC	5 cut(s)	188, 528, 657, 969, 1161
MboI	GATC	5 cut(s)	186, 526, 655, 967, 1159
MboII	GAAGA	6 cut(s)	35, 410, 819, 1071, 1163, 1193
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	967
MhlI	GDGCHC	1 cut(s)	1227
MluCI	AATT	8 cut(s)	33, 129, 136, 600, 645, 910, 1172, 1218
MlyI	GAGTC	3 cut(s)	86, 295, 363
MmeI	TCCRAC	1 cut(s)	995
MnlI	CCTC	9 cut(s)	259, 298, 406, 545, 742, 803, 1000, 1066, 1150
Mph1103I	ATGCAT	1 cut(s)	1016
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	6 cut(s)	48, 338, 540, 914, 1007, 1089
MslI	CAYNNNNRTG	1 cut(s)	238
MspCI	CTTAAG	3 cut(s)	47, 1006, 1088
MspI	CCGG	1 cut(s)	1228
MspR9I	CCNGG	2 cut(s)	217, 1228
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	217
NciI	CCSGG	1 cut(s)	1228
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	5 cut(s)	186, 526, 655, 967, 1159
NlaIII	CATG	9 cut(s)	62, 443, 511, 749, 826, 891, 958, 1018, 1069
NmuCI	GTSAC	1 cut(s)	78
NsiI	ATGCAT	1 cut(s)	1016
NspI	RCATGY	2 cut(s)	62, 511
PceI	AGGCCT	1 cut(s)	393
PciI	ACATGT	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	445, 983
PflFI	GACNNNGTC	1 cut(s)	991
PflMI	CCANNNNNTGG	1 cut(s)	955
PleI	GAGTC	3 cut(s)	85, 294, 363
PpsI	GAGTC	3 cut(s)	85, 294, 363
PscI	ACATGT	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	967
PsyI	GACNNNGTC	1 cut(s)	991
RsaI	GTAC	4 cut(s)	24, 221, 334, 506
RsaNI	GTAC	4 cut(s)	23, 220, 333, 505
RseI	CAYNNNNRTG	1 cut(s)	238
SaqAI	TTAA	6 cut(s)	48, 338, 540, 914, 1007, 1089
Sau3AI	GATC	5 cut(s)	186, 526, 655, 967, 1159
Sau96I	GGNCC	1 cut(s)	317
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	3 cut(s)	86, 295, 363
ScrFI	CCNGG	2 cut(s)	217, 1228
SduI	GDGCHC	1 cut(s)	1227
SfaNI	GCATC	4 cut(s)	480, 1001, 1074, 1192
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	238
SmlI	CTYRAG	4 cut(s)	26, 47, 1006, 1088
SmoI	CTYRAG	4 cut(s)	26, 47, 1006, 1088
Sse9I	AATT	8 cut(s)	33, 129, 136, 600, 645, 910, 1172, 1218
SseBI	AGGCCT	1 cut(s)	393
SspMI	CTAG	4 cut(s)	449, 719, 923, 977
StuI	AGGCCT	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	215, 1226
StyI	CCWWGG	2 cut(s)	388, 949
TaaI	ACNGT	3 cut(s)	84, 228, 653
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	6 cut(s)	92, 284, 374, 632, 986, 1082
TasI	AATT	8 cut(s)	33, 129, 136, 600, 645, 910, 1172, 1218
TatI	WGTACW	2 cut(s)	22, 504
TfiI	GAWTC	2 cut(s)	445, 983
Tru1I	TTAA	6 cut(s)	48, 338, 540, 914, 1007, 1089
Tru9I	TTAA	6 cut(s)	48, 338, 540, 914, 1007, 1089
TscAI	CASTG	4 cut(s)	87, 366, 438, 763
TseFI	GTSAC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	5 cut(s)	707, 839, 876, 952, 1164
TspRI	CASTG	4 cut(s)	87, 366, 438, 763
Tth111I	GACNNNGTC	1 cut(s)	991
Van91I	CCANNNNNTGG	1 cut(s)	955
Vha464I	CTTAAG	3 cut(s)	47, 1006, 1088
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	3 cut(s)	129, 910, 1172
XbaI	TCTAGA	1 cut(s)	922
XceI	RCATGY	2 cut(s)	62, 511
XmiI	GTMKAC	2 cut(s)	324, 550
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	4 cut(s)	449, 719, 923, 977
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.