Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

1184000 .. 1188325

Gene Structure 4326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG016500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAGTCAAAAACAATCCACCTGATCCTCCTCTTCATCTTCTTCATTTCTCCTCAGTTTCATTCTTCATATGCACAAACATGGATTAGAGCTGGTTACTGGTATGCCAGTGGTGAGTCTCCTATTCCTGACATAAACTCTGCCTTGTTTACTCATCTTATATGTGGTTTTGCCAATGTAAGTTCCTCCAGCTACCAGCTCATCATTCCCTCAGCTGATCAGCAGTACTACTCCAGCTTCACCGATATCGTTAAGCGAAAAAACCCATCAATCATCACACTCCTGTCCATCTGGAATGGACAAGCTTCAACAGCTCAAGGAATATTGGGTGACAAGGTCAATTCATCAGTCTTGTCCTCCATGCTCAATCAATCTTCTAGTAGAAGGTCTTTCATTGAGTCTTCAATCCAAACTGCAAGGCGCTATGGCTTTTGGGGGGTAGACTTGTTTTGGCTGTGGCCTAACACAGAAGCAGATATGATCAACTTGGGAAAGCTGTTGGATGAATGGAGAGCTGCTGTGGATTCTGAGCCAAGAAACTCAAGTCAGTCGAAATTAATGCTGACAATGGCTGTTAAATATGTGCCTTCTTTCGGATCAATGACTTATCCGATTGAGTCTATGAAGAAGAACTTGGATTTTGCACATGTGGTGGCATATGACTATCATCTGCCTTTGAAGGAAAATGTTACTGGTGCTCATGCTGCTCTGTATAACCCAACAAGTCATGTTAATACAGACTATGGTATAAGGCAGTGGCTAAACAATTCATTTCCGGCTAGCAAACTGGTTATGGGATTGGCTTACCATGGCTATGCGTGGACTCTTGCGAACCCGAATGACAATGGAATTGGAGCACCTGCAGCTGGTCTAGCTGTGACACAAGATGGTTCCATGAGCTATAAGTACATCAAGTGGTATACTCGAAGCTACGAAGCTAAAATAATGTATAATGCTAGTTATGTTGTGAATTACTGCATCATTGGATTGAGCTGGATTGGATTTGATGATGTTGAAGCTATCAGAGCTAAGATTGCATATGCCAAGGAAAAGAAGTTACTTGGTTACAATGTGTTTCTAGTCACAAATGATGACAACTGGGTGCTTTCTCGGGCAGGTACTCATTTCTTACCCCCCACCAAAAATGGTCTTACCTCAACATTTATAAAGAGCATGAAGAAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

395

Amino Acids

44.37

Weight (kDa)

8.98

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	31 - 364	1e-59	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1166
AarI	CACCTGC	1 cut(s)	868
Acc36I	ACCTGC	2 cut(s)	868, 1106
AccI	GTMKAC	2 cut(s)	441, 920
AclWI	GGATC	2 cut(s)	19, 604
AfaI	GTAC	3 cut(s)	227, 908, 1120
AfiI	CCNNNNNNNGG	2 cut(s)	593, 866
AflIII	ACRYGT	1 cut(s)	646
AgsI	TTSAA	4 cut(s)	309, 405, 679, 1016
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
Alw21I	GWGCWC	2 cut(s)	700, 859
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	19, 604
Ama87I	CYCGRG	1 cut(s)	1110
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	3 cut(s)	515, 704, 863
AseI	ATTAAT	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	423
AsuHPI	GGTGA	3 cut(s)	125, 232, 341
AsuNHI	GCTAGC	1 cut(s)	779
AvaI	CYCGRG	1 cut(s)	1110
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	700, 859
BbvCI	CCTCAGC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	502, 691, 875
BccI	CCATC	3 cut(s)	274, 296, 881
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BclI	TGATCA	2 cut(s)	217, 480
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	5 cut(s)	378, 780, 872, 957, 1079
BfmI	CTRYAG	1 cut(s)	861
BfoI	RGCGCY	1 cut(s)	424
BfuAI	ACCTGC	2 cut(s)	868, 1106
BisI	GCNGC	3 cut(s)	516, 705, 864
BlsI	GCNGC	3 cut(s)	517, 706, 865
BmcAI	AGTACT	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	1110
BmiI	GGNNCC	1 cut(s)	892
BmrI	ACTGGG	1 cut(s)	1108
BmsI	GCATC	1 cut(s)	987
BmtI	GCTAGC	1 cut(s)	783
BmuI	ACTGGG	1 cut(s)	1108
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	2 cut(s)	172, 217
Bpu10I	CCTNAGC	1 cut(s)	211
BpuEI	CTTGAG	2 cut(s)	300, 526
BsaJI	CCNNGG	2 cut(s)	808, 1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	593, 866
Bse1I	ACTGG	5 cut(s)	104, 108, 697, 792, 1103
BseDI	CCNNGG	2 cut(s)	808, 1044
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	593, 866
BseMII	CTCAG	3 cut(s)	68, 225, 519
BseNI	ACTGG	5 cut(s)	104, 108, 697, 792, 1103
BseRI	GAGGAG	2 cut(s)	20, 42
BseXI	GCAGC	3 cut(s)	502, 691, 875
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	700, 859
BsiHKCI	CYCGRG	1 cut(s)	1110
BsiSI	CCGG	1 cut(s)	776
BslI	CCNNNNNNNGG	2 cut(s)	593, 866
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	460
BsoBI	CYCGRG	1 cut(s)	1110
Bsp1286I	GDGCHC	2 cut(s)	700, 859
Bsp143I	GATC	4 cut(s)	24, 217, 480, 596
Bsp19I	CCATGG	1 cut(s)	808
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	3 cut(s)	67, 224, 520
BspLI	GGNNCC	1 cut(s)	892
BspMAI	CTGCAG	1 cut(s)	865
BspMI	ACCTGC	2 cut(s)	868, 1106
BspOI	GCTAGC	1 cut(s)	783
BspPI	GGATC	2 cut(s)	19, 604
BsrI	ACTGG	5 cut(s)	104, 108, 697, 792, 1103
BssECI	CCNNGG	2 cut(s)	808, 1044
BssMI	GATC	4 cut(s)	24, 217, 480, 596
BssNAI	GTATAC	1 cut(s)	921
BssT1I	CCWWGG	2 cut(s)	808, 1044
Bst1107I	GTATAC	1 cut(s)	921
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	781
BstDEI	CTNAG	4 cut(s)	54, 211, 528, 1029
BstDSI	CCRYGG	1 cut(s)	808
BstF5I	GGATG	1 cut(s)	508
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	4 cut(s)	27, 220, 483, 599
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	4 cut(s)	24, 217, 480, 596
BstMWI	GCNNNNNNNGC	6 cut(s)	311, 704, 863, 872, 1025, 1034
BstNSI	RCATGY	1 cut(s)	650
BstSFI	CTRYAG	1 cut(s)	861
BstV1I	GCAGC	3 cut(s)	502, 691, 875
BstV2I	GAAGAC	1 cut(s)	393
BstZ17I	GTATAC	1 cut(s)	921
BsuRI	GGCC	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	808
BtsCI	GGATG	1 cut(s)	508
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	2 cut(s)	115, 761
BveI	ACCTGC	2 cut(s)	868, 1106
Cac8I	GCNNGC	1 cut(s)	781
CfoI	GCGC	1 cut(s)	423
Csp6I	GTAC	3 cut(s)	226, 907, 1119
CviAII	CATG	8 cut(s)	81, 361, 647, 701, 728, 809, 895, 1174
CviQI	GTAC	3 cut(s)	226, 907, 1119
DdeI	CTNAG	4 cut(s)	54, 211, 528, 1029
DpnI	GATC	4 cut(s)	26, 219, 482, 598
DpnII	GATC	4 cut(s)	24, 217, 480, 596
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	808, 1044
Eco32I	GATATC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	1110
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	808, 1044
ErhI	CCWWGG	2 cut(s)	808, 1044
FaeI	CATG	8 cut(s)	84, 364, 650, 704, 731, 812, 898, 1177
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FatI	CATG	8 cut(s)	80, 360, 646, 700, 727, 808, 894, 1173
FauNDI	CATATG	3 cut(s)	70, 658, 1039
FbaI	TGATCA	2 cut(s)	217, 480
FblI	GTMKAC	2 cut(s)	441, 920
Fnu4HI	GCNGC	3 cut(s)	516, 705, 864
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	3 cut(s)	516, 705, 864
FspBI	CTAG	5 cut(s)	378, 780, 872, 957, 1079
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	3 cut(s)	516, 705, 864
GsuI	CTGGAG	2 cut(s)	172, 217
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	776
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	8 cut(s)	84, 364, 650, 704, 731, 812, 898, 1177
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	6 cut(s)	5, 116, 398, 524, 617, 823
HpaII	CCGG	1 cut(s)	776
HphI	GGTGA	3 cut(s)	125, 232, 341
Hpy166II	GTNNAC	4 cut(s)	150, 442, 822, 921
Hpy188I	TCNGA	4 cut(s)	529, 596, 612, 1025
Hpy188III	TCNNGA	2 cut(s)	128, 292
Hpy8I	GTNNAC	4 cut(s)	150, 442, 822, 921
HpyAV	CCTTC	4 cut(s)	378, 597, 673, 1174
HpyCH4V	TGCA	6 cut(s)	74, 416, 644, 863, 978, 1037
HpyF10VI	GCNNNNNNNGC	6 cut(s)	311, 704, 863, 872, 1025, 1034
HpyF3I	CTNAG	4 cut(s)	54, 211, 528, 1029
Hsp92II	CATG	8 cut(s)	84, 364, 650, 704, 731, 812, 898, 1177
HspAI	GCGC	1 cut(s)	421
Ksp22I	TGATCA	2 cut(s)	217, 480
Kzo9I	GATC	4 cut(s)	24, 217, 480, 596
LmnI	GCTCC	1 cut(s)	854
Lsp1109I	GCAGC	3 cut(s)	502, 691, 875
LweI	GCATC	1 cut(s)	987
MaeI	CTAG	5 cut(s)	378, 780, 872, 957, 1079
MaeIII	GTNAC	7 cut(s)	95, 329, 688, 877, 1056, 1064, 1081
MalI	GATC	4 cut(s)	26, 219, 482, 598
MboI	GATC	4 cut(s)	24, 217, 480, 596
MboII	GAAGA	8 cut(s)	25, 31, 34, 57, 366, 393, 637, 640
MhlI	GDGCHC	2 cut(s)	700, 859
MluCI	AATT	5 cut(s)	340, 554, 766, 849, 970
MlyI	GAGTC	5 cut(s)	14, 125, 407, 626, 817
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	7 cut(s)	38, 41, 63, 196, 220, 367, 1165
MseI	TTAA	4 cut(s)	252, 557, 576, 732
MslI	CAYNNNNRTG	2 cut(s)	79, 813
MspA1I	CMGCKG	2 cut(s)	215, 866
MspI	CCGG	1 cut(s)	776
MwoI	GCNNNNNNNGC	6 cut(s)	311, 704, 863, 872, 1025, 1034
NcoI	CCATGG	1 cut(s)	808
NdeI	CATATG	3 cut(s)	70, 658, 1039
NdeII	GATC	4 cut(s)	24, 217, 480, 596
NheI	GCTAGC	1 cut(s)	779
NlaIII	CATG	8 cut(s)	84, 364, 650, 704, 731, 812, 898, 1177
NlaIV	GGNNCC	1 cut(s)	892
NmuCI	GTSAC	3 cut(s)	329, 877, 1081
NspI	RCATGY	1 cut(s)	650
PaqCI	CACCTGC	1 cut(s)	868
PciI	ACATGT	1 cut(s)	646
PfeI	GAWTC	1 cut(s)	524
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	517, 706, 865
PleI	GAGTC	5 cut(s)	13, 124, 406, 625, 817
PpsI	GAGTC	5 cut(s)	13, 124, 406, 625, 817
PscI	ACATGT	1 cut(s)	646
PshBI	ATTAAT	1 cut(s)	557
PsiI	TTATAA	1 cut(s)	1166
PspN4I	GGNNCC	1 cut(s)	892
PstI	CTGCAG	1 cut(s)	865
PsyI	GACNNNGTC	1 cut(s)	335
PvuII	CAGCTG	2 cut(s)	215, 866
RsaI	GTAC	3 cut(s)	227, 908, 1120
RsaNI	GTAC	3 cut(s)	226, 907, 1119
RseI	CAYNNNNRTG	2 cut(s)	79, 813
SaqAI	TTAA	4 cut(s)	252, 557, 576, 732
SatI	GCNGC	3 cut(s)	516, 705, 864
Sau3AI	GATC	4 cut(s)	24, 217, 480, 596
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	5 cut(s)	14, 125, 407, 626, 817
SduI	GDGCHC	2 cut(s)	700, 859
SfaNI	GCATC	1 cut(s)	987
SfcI	CTRYAG	1 cut(s)	861
SmiMI	CAYNNNNRTG	2 cut(s)	79, 813
SmlI	CTYRAG	2 cut(s)	315, 541
SmoI	CTYRAG	2 cut(s)	315, 541
Sse9I	AATT	5 cut(s)	340, 554, 766, 849, 970
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	5 cut(s)	378, 780, 872, 957, 1079
StyI	CCWWGG	2 cut(s)	808, 1044
TaqI	TCGA	2 cut(s)	551, 925
TasI	AATT	5 cut(s)	340, 554, 766, 849, 970
TatI	WGTACW	2 cut(s)	225, 906
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	4 cut(s)	252, 557, 576, 732
Tru9I	TTAA	4 cut(s)	252, 557, 576, 732
TscAI	CASTG	2 cut(s)	115, 761
TseFI	GTSAC	3 cut(s)	329, 877, 1081
TseI	GCWGC	3 cut(s)	515, 704, 863
Tsp45I	GTSAC	3 cut(s)	329, 877, 1081
TspDTI	ATGAA	9 cut(s)	25, 34, 50, 57, 333, 382, 519, 638, 759
TspRI	CASTG	2 cut(s)	115, 761
Tth111I	GACNNNGTC	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	557
XceI	RCATGY	1 cut(s)	650
XmiI	GTMKAC	2 cut(s)	441, 920
XspI	CTAG	5 cut(s)	378, 780, 872, 957, 1079
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.