Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

707455 .. 709227

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTTTATTATCCTACTGGGAACAATAATGTGTTACATGCAAAGGAGAGTACTTAAGTCAATTGGGATTGTAGGCAACATCAAAAGATCAGTTTATAGGCTATTAGATATAGTTCCAAGTACAGACAGTTTTGACAGCAATGCTCCTAATCTGCAAGTTTTTAGTTTTGCAACCATCAAAGCAGCTACAAATAACTTTTCGAGTAAGAATAAGCTTGGAGAGGGTGGCTTTGGACCTGTATACAAGGGTACGTTAAGGAAGGGCCAGCAAATCGCAGTGAAAAGACTTTCGAAAACTTCAAACCAAGGCCTTGAAGAGTTTGAAAATGAGGTCACACTTGCTGCAACACTGCACCATGTGAATCTAGTTAGAGTTCTGGGATATTGCACCAAGAGGGAAGAAAAGATGCTGATATATGAGTACATGCCAAACAAAAGCTTGGATCTCTACCTCTTTGATCCAAGTAGATGCGATCTTTTGCATTGGGAGCAACGTGTCCACATCATTGAAGGGGTAATTCAAGGCCTTCTATATCTCCAAGAGTACTCAAACTCTACAATAATTCACCGTGATCTGAAATCTAGCAACATTTTGTTAGATGATAACATGAACCCGAAAATATCAGATTTTGGTCTAGCCAGAGCATTCAGAAAGAATGAACTTGAGGCAAACACTGGTCGCATTGTAGGAACATATGGCTATGTTCCCCCTGAATATGTAAGAAGAGGCATTTATTCCATGAAATCCGATGTTTACAGCTTCGGTGTTCTGCTTCTGCATATCATAAGTGGCAAGAGAAGTTCATGCTTTTATGGCATAGATGGAAATCTAAACATTCTAGAGCACGCATATGAGTTGTGGAAAGAAGGCCAAGGCATGGACTTTGTAGATCCTACCCTAGATGATTTGACATCGTCTTGCAAGCTCTTAAGATGCATGGGGGTGGCCTTGTTATGTGTCCAAGAAAATCCAGTAGATAGACCATCCATGCTGGAGGTTTCTTCAATGCTCAAGAGCGAAAGTGCAGCCATCATTAGTCCTAAAAAGCCCGCTTTCTCAGTTCAGAAGGATGAAGATGAGGATCATGTATACACATACAGGGAAGAAATCTATTCAGTCAATGACGCAACAATGTCTGAAATTGTGCCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

385

Amino Acids

43.49

Weight (kDa)

6.47

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	67 - 333	7.4e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	68 - 336	9.6e-46	Protein tyrosine and serine/threonine kinase
DUF3403	PF11883	339 - 384	1e-05	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	877
AccI	GTMKAC	2 cut(s)	240, 1089
AciI	CCGC	1 cut(s)	1050
AclWI	GGATC	4 cut(s)	450, 452, 884, 1089
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	5 cut(s)	51, 121, 250, 422, 545
AfiI	CCNNNNNNNGG	1 cut(s)	877
AflII	CTTAAG	2 cut(s)	53, 928
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	6 cut(s)	300, 314, 323, 509, 521, 1005
AluBI	AGCT	5 cut(s)	185, 214, 438, 759, 925
AluI	AGCT	5 cut(s)	185, 214, 438, 759, 925
Alw21I	GWGCWC	1 cut(s)	846
AlwI	GGATC	4 cut(s)	450, 452, 884, 1089
AoxI	GGCC	5 cut(s)	262, 307, 523, 868, 945
ApeKI	GCWGC	3 cut(s)	182, 341, 1025
AspS9I	GGNCC	2 cut(s)	233, 262
AsuHPI	GGTGA	1 cut(s)	557
AsuII	TTCGAA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	1149
Bbv12I	GWGCWC	1 cut(s)	846
BbvI	GCAGC	3 cut(s)	194, 328, 1037
BccI	CCATC	4 cut(s)	182, 815, 991, 1037
BfaI	CTAG	5 cut(s)	365, 582, 635, 839, 899
BfrI	CTTAAG	2 cut(s)	53, 928
BisI	GCNGC	3 cut(s)	183, 342, 1026
BlsI	GCNGC	3 cut(s)	184, 343, 1027
BmcAI	AGTACT	2 cut(s)	51, 545
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	233, 262
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	396, 458, 923
BmuI	ACTGGG	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	1013
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	2 cut(s)	683, 995
BsaBI	GATNNNNATC	2 cut(s)	825, 1080
BsaJI	CCNNGG	2 cut(s)	304, 871
Bsc4I	CCNNNNNNNGG	1 cut(s)	877
Bse1I	ACTGG	3 cut(s)	21, 679, 971
Bse3DI	GCAATG	1 cut(s)	145
Bse8I	GATNNNNATC	2 cut(s)	825, 1080
BseDI	CCNNGG	2 cut(s)	304, 871
BseGI	GGATG	2 cut(s)	983, 1075
BseJI	GATNNNNATC	2 cut(s)	825, 1080
BseLI	CCNNNNNNNGG	1 cut(s)	877
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	1071
BseNI	ACTGG	3 cut(s)	21, 679, 971
BseSI	GKGCMC	1 cut(s)	1149
BseXI	GCAGC	3 cut(s)	194, 328, 1037
BsgI	GTGCAG	2 cut(s)	335, 1044
BshFI	GGCC	5 cut(s)	264, 309, 525, 870, 947
BsiHKAI	GWGCWC	1 cut(s)	846
BslI	CCNNNNNNNGG	1 cut(s)	877
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	5 cut(s)	264, 309, 525, 870, 947
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	846, 1149
Bsp143I	GATC	7 cut(s)	86, 442, 457, 472, 571, 889, 1081
BspACI	CCGC	1 cut(s)	1050
BspANI	GGCC	5 cut(s)	264, 309, 525, 870, 947
BspCNI	CTCAG	1 cut(s)	1070
BspPI	GGATC	4 cut(s)	450, 452, 884, 1089
BspT104I	TTCGAA	1 cut(s)	290
BspTI	CTTAAG	2 cut(s)	53, 928
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	3 cut(s)	21, 679, 971
BssECI	CCNNGG	2 cut(s)	304, 871
BssMI	GATC	7 cut(s)	86, 442, 457, 472, 571, 889, 1081
BssNAI	GTATAC	2 cut(s)	241, 1090
BssT1I	CCWWGG	2 cut(s)	304, 871
Bst1107I	GTATAC	2 cut(s)	241, 1090
Bst4CI	ACNGT	2 cut(s)	128, 569
Bst6I	CTCTTC	2 cut(s)	309, 718
BstAFI	CTTAAG	2 cut(s)	53, 928
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	4 cut(s)	266, 846, 923, 1050
BstDEI	CTNAG	1 cut(s)	1057
BstF5I	GGATG	2 cut(s)	983, 1075
BstKTI	GATC	7 cut(s)	89, 445, 460, 475, 574, 892, 1084
BstMBI	GATC	7 cut(s)	86, 442, 457, 472, 571, 889, 1081
BstMWI	GCNNNNNNNGC	2 cut(s)	487, 813
BstNSI	RCATGY	2 cut(s)	40, 427
BstSLI	GKGCMC	1 cut(s)	1149
BstV1I	GCAGC	3 cut(s)	194, 328, 1037
BstX2I	RGATCY	2 cut(s)	442, 889
BstYI	RGATCY	2 cut(s)	442, 889
BstZ17I	GTATAC	2 cut(s)	241, 1090
BsuRI	GGCC	5 cut(s)	264, 309, 525, 870, 947
BtsCI	GGATG	2 cut(s)	983, 1075
BtsI	GCAGTG	2 cut(s)	282, 347
BtsIMutI	CAGTG	3 cut(s)	282, 347, 672
Cac8I	GCNNGC	4 cut(s)	266, 846, 923, 1050
Cfr13I	GGNCC	2 cut(s)	233, 262
CseI	GACGC	1 cut(s)	1133
Csp6I	GTAC	5 cut(s)	50, 120, 249, 421, 544
CviQI	GTAC	5 cut(s)	50, 120, 249, 421, 544
DdeI	CTNAG	1 cut(s)	1057
DpnI	GATC	7 cut(s)	88, 444, 459, 474, 573, 891, 1083
DpnII	GATC	7 cut(s)	86, 442, 457, 472, 571, 889, 1081
DraIII	CACNNNGTG	1 cut(s)	358
Eam1104I	CTCTTC	2 cut(s)	309, 718
EarI	CTCTTC	2 cut(s)	309, 718
Eco130I	CCWWGG	2 cut(s)	304, 871
Eco147I	AGGCCT	2 cut(s)	309, 525
Eco47I	GGWCC	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	304, 871
EcoT22I	ATGCAT	1 cut(s)	938
ErhI	CCWWGG	2 cut(s)	304, 871
FauI	CCCGC	1 cut(s)	1057
FauNDI	CATATG	2 cut(s)	694, 850
FblI	GTMKAC	2 cut(s)	240, 1089
Fnu4HI	GCNGC	3 cut(s)	183, 342, 1026
FokI	GGATG	2 cut(s)	970, 1082
Fsp4HI	GCNGC	3 cut(s)	183, 342, 1026
FspBI	CTAG	5 cut(s)	365, 582, 635, 839, 899
GluI	GCNGC	3 cut(s)	183, 342, 1026
GsuI	CTGGAG	1 cut(s)	1013
HaeIII	GGCC	5 cut(s)	264, 309, 525, 870, 947
HgaI	GACGC	1 cut(s)	1133
HindIII	AAGCTT	2 cut(s)	212, 436
HinfI	GANTC	1 cut(s)	361
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	4 cut(s)	241, 499, 754, 1090
Hpy188I	TCNGA	6 cut(s)	576, 625, 650, 748, 1065, 1138
Hpy188III	TCNNGA	2 cut(s)	839, 1012
Hpy8I	GTNNAC	4 cut(s)	241, 499, 754, 1090
HpyAV	CCTTC	5 cut(s)	253, 503, 536, 860, 1060
HpyCH4III	ACNGT	2 cut(s)	128, 569
HpyCH4IV	ACGT	2 cut(s)	251, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	487, 813
HpyF3I	CTNAG	1 cut(s)	1057
HpySE526I	ACGT	2 cut(s)	251, 493
Kzo9I	GATC	7 cut(s)	86, 442, 457, 472, 571, 889, 1081
LmnI	GCTCC	2 cut(s)	148, 487
Lsp1109I	GCAGC	3 cut(s)	194, 328, 1037
LweI	GCATC	3 cut(s)	396, 458, 923
MaeI	CTAG	5 cut(s)	365, 582, 635, 839, 899
MaeII	ACGT	2 cut(s)	251, 493
MaeIII	GTNAC	2 cut(s)	32, 331
MalI	GATC	7 cut(s)	88, 444, 459, 474, 573, 891, 1083
MboI	GATC	7 cut(s)	86, 442, 457, 472, 571, 889, 1081
MboII	GAAGA	6 cut(s)	326, 410, 735, 993, 1085, 1115
MfeI	CAATTG	1 cut(s)	60
MflI	RGATCY	2 cut(s)	442, 889
MhlI	GDGCHC	2 cut(s)	846, 1149
MluCI	AATT	4 cut(s)	60, 516, 561, 1140
MnlI	CCTC	8 cut(s)	214, 322, 387, 461, 658, 719, 988, 1072
Mph1103I	ATGCAT	1 cut(s)	938
MseI	TTAA	3 cut(s)	54, 254, 929
MslI	CAYNNNNRTG	2 cut(s)	849, 941
MspCI	CTTAAG	2 cut(s)	53, 928
MunI	CAATTG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	644
MwoI	GCNNNNNNNGC	2 cut(s)	487, 813
NdeI	CATATG	2 cut(s)	694, 850
NdeII	GATC	7 cut(s)	86, 442, 457, 472, 571, 889, 1081
NmuCI	GTSAC	1 cut(s)	331
NsiI	ATGCAT	1 cut(s)	938
NspI	RCATGY	2 cut(s)	40, 427
NspV	TTCGAA	1 cut(s)	290
PceI	AGGCCT	2 cut(s)	309, 525
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	1 cut(s)	361
PflFI	GACNNNGTC	1 cut(s)	913
PflMI	CCANNNNNTGG	1 cut(s)	877
PkrI	GCNGC	3 cut(s)	184, 343, 1027
PspPI	GGNCC	2 cut(s)	233, 262
PsuI	RGATCY	2 cut(s)	442, 889
PsyI	GACNNNGTC	1 cut(s)	913
RsaI	GTAC	5 cut(s)	51, 121, 250, 422, 545
RsaNI	GTAC	5 cut(s)	50, 120, 249, 421, 544
RseI	CAYNNNNRTG	2 cut(s)	849, 941
SaqAI	TTAA	3 cut(s)	54, 254, 929
SatI	GCNGC	3 cut(s)	183, 342, 1026
Sau3AI	GATC	7 cut(s)	86, 442, 457, 472, 571, 889, 1081
Sau96I	GGNCC	2 cut(s)	233, 262
ScaI	AGTACT	2 cut(s)	51, 545
SduI	GDGCHC	2 cut(s)	846, 1149
SfaNI	GCATC	3 cut(s)	396, 458, 923
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	849, 941
SmlI	CTYRAG	4 cut(s)	53, 662, 928, 1010
SmoI	CTYRAG	4 cut(s)	53, 662, 928, 1010
Sse9I	AATT	4 cut(s)	60, 516, 561, 1140
SseBI	AGGCCT	2 cut(s)	309, 525
SsiI	CCGC	1 cut(s)	1050
SspMI	CTAG	5 cut(s)	365, 582, 635, 839, 899
StuI	AGGCCT	2 cut(s)	309, 525
StyI	CCWWGG	2 cut(s)	304, 871
TaaI	ACNGT	2 cut(s)	128, 569
TaiI	ACGT	2 cut(s)	254, 496
TaqI	TCGA	2 cut(s)	200, 290
TasI	AATT	4 cut(s)	60, 516, 561, 1140
TatI	WGTACW	4 cut(s)	49, 119, 420, 543
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	3 cut(s)	54, 254, 929
Tru9I	TTAA	3 cut(s)	54, 254, 929
TscAI	CASTG	3 cut(s)	282, 354, 679
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	182, 341, 1025
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	5 cut(s)	623, 672, 755, 792, 1086
TspRI	CASTG	3 cut(s)	282, 354, 679
Tth111I	GACNNNGTC	1 cut(s)	913
Van91I	CCANNNNNTGG	1 cut(s)	877
Vha464I	CTTAAG	2 cut(s)	53, 928
VpaK11BI	GGWCC	1 cut(s)	233
XbaI	TCTAGA	1 cut(s)	838
XceI	RCATGY	2 cut(s)	40, 427
XmiI	GTMKAC	2 cut(s)	240, 1089
XspI	CTAG	5 cut(s)	365, 582, 635, 839, 899
ZrmI	AGTACT	2 cut(s)	51, 545
Zsp2I	ATGCAT	1 cut(s)	938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.