Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

1055003 .. 1058935

Gene Structure 3933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG018200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCAATACCATTTATCAATAGCTACTAAAGTTCTCCTCCTCTTTCTCTTTTCTACGAACTTCAATTGTTCAAACACTCAGTCATGGATCAAAGCCGGTTACCATTACACAGGTATTGAATTCCCTGTCTCTGACATAGATTCCACATTGTTCACTCACCTTATATGTGGTTTTGCCCATATAAACTCTTCCACGTACCAGCTCTCAATCACCTCCTCCACCCAACAAGAATTCTCCACTTTCACAAATGTTGTCAAGCGCAAAAACCCAGAAGTCACAACCTTGCTATCCATCTGGGGTGGAGGAGAAGACTATTCAGTGTTGTTTTCAATGCTGAACCAGTCTTCTCAACGGAGATCTTTCATTGAATCTTCAATAACGACTGCTAGACTTTATGAGTTTGATGGGCTAGACCTTACAGGGGCTGTGCCAAGAACAAGCATGCACACCACATCTTTGGGAACATTTCTAAATGAGTGGCGTGCTGCGGTGGATTGTGAAGCAAAAAAGTCAGGAAAGTCAGGTTTGCTCTTGACAATGGCACTTTATCATCATATGCAGATTATGGATACCGTGACTTATCCGATTGACTCAATTAAGAAGAACTTGAGTTGGGTTCATCTTGTGGCATATGATTACTATCTTCCTAAACAGGAAAACTTCACACACCCTCATGCTGCTTTATATGACCCAATATCAAATGGGACTAACACGAATAGTCGTGTTAAGGACTTGATAAGCAGAGGACTACCTGCTAGCAAGCTGGTTTTAGGCTTGCCTTACCATGGTTATGGTTGGACTCTTGTTAATCCCAACGACAATAATGTTGGTGCAGCGGCATCAGGTCCTGCCGTTAACATAGATGGGTCCATGGCCTATAAGTACATCAAATGGTTCATTAAGACATATGGATATGGTGCAGTTCCTATGTACAATGATACTTATGTGGTGAATTACTGCACAATTGGGTCAAGTTGGATTAACTTTGATGATGTGGAGGTTATCAAGGCGAAAGTTTCTTACGCTAAGAAGATGGGGCTTCTTGGCTACAATGTGTTTCAAGTGGGCAACGATGACAATTGGGTGCTCTCTAGGGCAGCAGGTAGGTTGATATTAGCTTCCAGGTATTTTCGGCATGTTTACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

382

Amino Acids

42.88

Weight (kDa)

8.45

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	43 - 358	4.1e-55	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	760, 1091
AciI	CCGC	2 cut(s)	488, 836
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	119, 230
AfaI	GTAC	3 cut(s)	197, 884, 932
AfiI	CCNNNNNNNGG	2 cut(s)	421, 785
AgsI	TTSAA	7 cut(s)	64, 72, 119, 330, 368, 375, 1061
AjnI	CCWGG	1 cut(s)	1121
AluBI	AGCT	4 cut(s)	23, 202, 763, 1118
AluI	AGCT	4 cut(s)	23, 202, 763, 1118
Alw21I	GWGCWC	1 cut(s)	1089
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	2 cut(s)	425, 848
AoxI	GGCC	1 cut(s)	873
ApeKI	GCWGC	4 cut(s)	485, 677, 833, 1097
ApoI	RAATTY	2 cut(s)	119, 230
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	845, 867
AsuHPI	GGTGA	3 cut(s)	149, 202, 961
AsuNHI	GCTAGC	1 cut(s)	755
AvaII	GGWCC	2 cut(s)	845, 867
BaeI	ACNNNNGTAYC	2 cut(s)	930, 963
BbsI	GAAGAC	2 cut(s)	315, 336
Bbv12I	GWGCWC	1 cut(s)	1089
BbvI	GCAGC	4 cut(s)	472, 664, 845, 1109
BccI	CCATC	4 cut(s)	299, 398, 857, 1027
BceAI	ACGGC	1 cut(s)	836
BciT130I	CCWGG	1 cut(s)	1123
BciVI	GTATCC	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	4 cut(s)	387, 410, 756, 1092
BfuAI	ACCTGC	2 cut(s)	760, 1091
BfuI	GTATCC	1 cut(s)	562
BglII	AGATCT	1 cut(s)	356
BisI	GCNGC	5 cut(s)	486, 678, 834, 837, 1098
BlsI	GCNGC	5 cut(s)	487, 679, 835, 838, 1099
Bme1390I	CCNGG	1 cut(s)	1123
Bme18I	GGWCC	2 cut(s)	845, 867
BmgT120I	GGNCC	2 cut(s)	845, 867
BmiI	GGNNCC	1 cut(s)	868
BmrFI	CCNGG	1 cut(s)	1123
BmsI	GCATC	1 cut(s)	848
BmtI	GCTAGC	1 cut(s)	759
BpiI	GAAGAC	2 cut(s)	315, 336
BpuEI	CTTGAG	1 cut(s)	628
BsaAI	YACGTR	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	784, 870
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 785
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	340
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	1123
BseDI	CCNNGG	2 cut(s)	784, 870
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	421, 785
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	4 cut(s)	26, 29, 205, 318
BseXI	GCAGC	4 cut(s)	472, 664, 845, 1109
BsgI	GTGCAG	3 cut(s)	852, 939, 943
BshFI	GGCC	1 cut(s)	875
BsiHKAI	GWGCWC	1 cut(s)	1089
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	2 cut(s)	421, 785
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	718
BsnI	GGCC	1 cut(s)	875
Bsp1286I	GDGCHC	1 cut(s)	1089
Bsp1407I	TGTACA	1 cut(s)	930
Bsp143I	GATC	2 cut(s)	87, 356
Bsp19I	CCATGG	2 cut(s)	784, 870
BspACI	CCGC	2 cut(s)	488, 836
BspANI	GGCC	1 cut(s)	875
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	868
BspMI	ACCTGC	2 cut(s)	760, 1091
BspOI	GCTAGC	1 cut(s)	759
BspPI	GGATC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	930
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	784, 870
BssMI	GATC	2 cut(s)	87, 356
BssT1I	CCWWGG	2 cut(s)	784, 870
Bst2UI	CCWGG	1 cut(s)	1123
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	193
BstAUI	TGTACA	1 cut(s)	930
BstBAI	YACGTR	1 cut(s)	195
BstC8I	GCNNGC	5 cut(s)	443, 483, 757, 761, 776
BstDEI	CTNAG	2 cut(s)	78, 1026
BstDSI	CCRYGG	2 cut(s)	784, 870
BstEII	GGTNACC	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	2 cut(s)	90, 359
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	87, 356
BstNI	CCWGG	1 cut(s)	1123
BstNSI	RCATGY	2 cut(s)	445, 1139
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	1121
BstV1I	GCAGC	4 cut(s)	472, 664, 845, 1109
BstV2I	GAAGAC	2 cut(s)	315, 336
BstX2I	RGATCY	1 cut(s)	356
BstXI	CCANNNNNNTGG	2 cut(s)	457, 791
BstYI	RGATCY	1 cut(s)	356
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	875
BtgI	CCRYGG	2 cut(s)	784, 870
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	2 cut(s)	760, 1091
Cac8I	GCNNGC	5 cut(s)	443, 483, 757, 761, 776
CaiI	CAGNNNCTG	2 cut(s)	425, 848
CfoI	GCGC	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	845, 867
Csp6I	GTAC	3 cut(s)	196, 883, 931
CviAII	CATG	6 cut(s)	84, 442, 674, 785, 871, 1136
CviQI	GTAC	3 cut(s)	196, 883, 931
DdeI	CTNAG	2 cut(s)	78, 1026
DpnI	GATC	2 cut(s)	89, 358
DpnII	GATC	2 cut(s)	87, 356
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	784, 870
Eco47I	GGWCC	2 cut(s)	845, 867
Eco91I	GGTNACC	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	845
EcoO65I	GGTNACC	1 cut(s)	98
EcoRI	GAATTC	2 cut(s)	119, 230
EcoRII	CCWGG	1 cut(s)	1121
EcoT14I	CCWWGG	2 cut(s)	784, 870
ErhI	CCWWGG	2 cut(s)	784, 870
FaeI	CATG	6 cut(s)	87, 445, 677, 788, 874, 1139
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	6 cut(s)	83, 441, 673, 784, 870, 1135
FauNDI	CATATG	3 cut(s)	555, 631, 907
Fnu4HI	GCNGC	5 cut(s)	486, 678, 834, 837, 1098
Fsp4HI	GCNGC	5 cut(s)	486, 678, 834, 837, 1098
FspBI	CTAG	4 cut(s)	387, 410, 756, 1092
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	5 cut(s)	486, 678, 834, 837, 1098
HaeIII	GGCC	1 cut(s)	875
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	6 cut(s)	87, 445, 677, 788, 874, 1139
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	4 cut(s)	140, 368, 590, 799
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	3 cut(s)	149, 202, 961
Hpy166II	GTNNAC	3 cut(s)	153, 856, 1141
Hpy188I	TCNGA	2 cut(s)	133, 585
Hpy188III	TCNNGA	2 cut(s)	513, 532
Hpy8I	GTNNAC	3 cut(s)	153, 856, 1141
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	6 cut(s)	4, 445, 559, 833, 920, 960
HpyF3I	CTNAG	2 cut(s)	78, 1026
HpySE526I	ACGT	1 cut(s)	194
Hsp92II	CATG	6 cut(s)	87, 445, 677, 788, 874, 1139
HspAI	GCGC	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	2 cut(s)	87, 356
Lsp1109I	GCAGC	4 cut(s)	472, 664, 845, 1109
LweI	GCATC	1 cut(s)	848
MaeI	CTAG	4 cut(s)	387, 410, 756, 1092
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	3 cut(s)	98, 274, 574
MalI	GATC	2 cut(s)	89, 358
MboI	GATC	2 cut(s)	87, 356
MboII	GAAGA	7 cut(s)	180, 320, 336, 363, 613, 635, 1042
MfeI	CAATTG	3 cut(s)	64, 963, 1078
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	1089
MluCI	AATT	7 cut(s)	64, 119, 230, 594, 952, 963, 1078
MlyI	GAGTC	2 cut(s)	584, 793
MmeI	TCCRAC	2 cut(s)	776, 956
MnlI	CCTC	8 cut(s)	47, 50, 223, 226, 296, 681, 737, 991
MseI	TTAA	6 cut(s)	597, 726, 807, 855, 900, 981
MslI	CAYNNNNRTG	2 cut(s)	672, 789
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	1123
MunI	CAATTG	3 cut(s)	64, 963, 1078
MvaI	CCWGG	1 cut(s)	1123
NcoI	CCATGG	2 cut(s)	784, 870
NdeI	CATATG	3 cut(s)	555, 631, 907
NdeII	GATC	2 cut(s)	87, 356
NheI	GCTAGC	1 cut(s)	755
NlaIII	CATG	6 cut(s)	87, 445, 677, 788, 874, 1139
NlaIV	GGNNCC	1 cut(s)	868
NmuCI	GTSAC	2 cut(s)	274, 574
NspI	RCATGY	2 cut(s)	445, 1139
PaeI	GCATGC	1 cut(s)	445
PfeI	GAWTC	2 cut(s)	140, 368
PkrI	GCNGC	5 cut(s)	487, 679, 835, 838, 1099
PleI	GAGTC	2 cut(s)	584, 793
PpsI	GAGTC	2 cut(s)	584, 793
Ppu21I	YACGTR	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	845
Psp6I	CCWGG	1 cut(s)	1121
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	1121
PspN4I	GGNNCC	1 cut(s)	868
PspPI	GGNCC	2 cut(s)	845, 867
PspPPI	RGGWCCY	1 cut(s)	845
PstNI	CAGNNNCTG	2 cut(s)	425, 848
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	3 cut(s)	197, 884, 932
RsaNI	GTAC	3 cut(s)	196, 883, 931
RseI	CAYNNNNRTG	2 cut(s)	672, 789
SaqAI	TTAA	6 cut(s)	597, 726, 807, 855, 900, 981
SatI	GCNGC	5 cut(s)	486, 678, 834, 837, 1098
Sau3AI	GATC	2 cut(s)	87, 356
Sau96I	GGNCC	2 cut(s)	845, 867
SchI	GAGTC	2 cut(s)	584, 793
ScrFI	CCNGG	1 cut(s)	1123
SduI	GDGCHC	1 cut(s)	1089
SfaNI	GCATC	1 cut(s)	848
SinI	GGWCC	2 cut(s)	845, 867
SmiMI	CAYNNNNRTG	2 cut(s)	672, 789
SmlI	CTYRAG	1 cut(s)	607
SmoI	CTYRAG	1 cut(s)	607
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	7 cut(s)	64, 119, 230, 594, 952, 963, 1078
SsiI	CCGC	2 cut(s)	488, 836
SspMI	CTAG	4 cut(s)	387, 410, 756, 1092
StyD4I	CCNGG	1 cut(s)	1121
StyI	CCWWGG	2 cut(s)	784, 870
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	1 cut(s)	197
TasI	AATT	7 cut(s)	64, 119, 230, 594, 952, 963, 1078
TatI	WGTACW	2 cut(s)	882, 930
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	2 cut(s)	140, 368
Tru1I	TTAA	6 cut(s)	597, 726, 807, 855, 900, 981
Tru9I	TTAA	6 cut(s)	597, 726, 807, 855, 900, 981
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	274, 574
TseI	GCWGC	4 cut(s)	485, 677, 833, 1097
Tsp45I	GTSAC	2 cut(s)	274, 574
TspDTI	ATGAA	3 cut(s)	352, 608, 886
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	2 cut(s)	845, 867
XapI	RAATTY	2 cut(s)	119, 230
XceI	RCATGY	2 cut(s)	445, 1139
XspI	CTAG	4 cut(s)	387, 410, 756, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.