Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Reverse (-)

4009234 .. 4011144

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTTTACCTTGACAGCTCAAGAGGAAGGAGGTCAACAGAAGAAGAAACGGTTACTGGTGATTGTTCTGGTCACAATTGCTATGATTATTGTCCTACTGGGAACAATGATGTGTTACCAAAAAAGGAGAGTACTCGAGTCAATTGAGATTATAGACAACATTAAAAGATCAGTTTACAGGCTATTGAATATAGTTCCTAGTACAGATAATTTTGACAGCAATGCTCCTAATCTGCAAGTATTCAGTTATACAACAATCAAAGCGGCTACAAATAACTTTTCGAGTCAGAATAAGCTTGGAGAGGGTGGCTTTGGACCTGTATACAAGGGTACATTAAGGAAGGGTCAGCAAATAGCAGTTAAAAGACTTTCGAAAACTTCAAACCAAGGCCTTGAAGAGTTTCAAAATGAGGTTACGCTTACTGCAACACTACACCATGTGAATCTGGTTAGAGTTCTGGGATATTGCTCCAAGAGGGAAGAAAAGATGCTGATATATGAGTACATGCCAAACAAAAGCTTGGATCACTACCTCTTTGATCCAAGTAGTTGTAATCTTTTGGATTGGGAGCAACGTGTCCACATCATTGAAGGGATAATTCAAGGGCTTCTATATCTCCAAGAATACTCAAACTCTACAATAATTCACCGTGATCTGAAATCAAATAACATTCTGTTAGATGATGAGATGAACCCAAAAATATCAGATTTTGGTCTAGCCAGAGCTTTCAGAAAGAATGAACATGAGGCAAATACTGATCGCATTGTAGGAACATATGGCTATGTTCCCCCTGAATATGTAAGAAGAGGCATTTATTCAATGAAATACGATGTTTACAGCTTCGGTGTTCTGCTTCTGCAAATCATAAGTGGCAAGAGAAGTTCATGTTTGTATGGCTTTGATGGAAATTTAAACATTCTAGAACACGCATATGAATTGTGGAAAGAAGGCCGAGGCATGGATTTCATAGGTCCAACCCTTGATGATTCGACTTCGTCTTGCAAGCTCTTAAGATGCATGGCGGTAGCCTTATTATGTGTCCAAGAAAATCCAGTAGATAGACCATCCATGCTGGAGGTTTCTTCGATGCTCAAGAGCGAAAGTGCAGTCGTCATTAGTCCTAAAAAGCCTGCTTTCTCAGTTAAGAAGGATGAAGATGAGGATCATATGTACAAAGAAATCTATTCAGTCAATGATGCAACAATGTCCGAAATTGTGCCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

408

Amino Acids

46.42

Weight (kDa)

6.73

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	94 - 296	7.7e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	95 - 362	2.3e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	2 cut(s)	263, 1022
AclWI	GGATC	3 cut(s)	531, 533, 1170
AcsI	RAATTY	1 cut(s)	907
AdeI	CACNNNGTG	1 cut(s)	439
AfaI	GTAC	5 cut(s)	132, 202, 331, 503, 1172
AfiI	CCNNNNNNNGG	1 cut(s)	958
AflII	CTTAAG	1 cut(s)	1009
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	7 cut(s)	187, 381, 395, 404, 590, 602, 819
AluBI	AGCT	6 cut(s)	17, 295, 519, 725, 840, 1006
AluI	AGCT	6 cut(s)	17, 295, 519, 725, 840, 1006
AlwI	GGATC	3 cut(s)	531, 533, 1170
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	388, 949
ApoI	RAATTY	1 cut(s)	907
ArsI	GACNNNNNNTTYG	2 cut(s)	1092, 1124
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	314, 971
AsuHPI	GGTGA	2 cut(s)	70, 638
AsuII	TTCGAA	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	314, 971
BaeGI	GKGCMC	1 cut(s)	1221
BccI	CCATC	2 cut(s)	896, 1072
BfaI	CTAG	3 cut(s)	198, 716, 920
BfrI	CTTAAG	1 cut(s)	1009
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
BmcAI	AGTACT	1 cut(s)	132
Bme18I	GGWCC	2 cut(s)	314, 971
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	314, 971
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	4 cut(s)	477, 1004, 1077, 1186
BmuI	ACTGGG	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	1094
Bpu14I	TTCGAA	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	1076
BsaBI	GATNNNNATC	1 cut(s)	1161
BsaJI	CCNNGG	2 cut(s)	385, 952
Bsc4I	CCNNNNNNNGG	1 cut(s)	958
Bse1I	ACTGG	3 cut(s)	60, 102, 1052
Bse3DI	GCAATG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	1161
BseDI	CCNNGG	2 cut(s)	385, 952
BseGI	GGATG	2 cut(s)	1064, 1156
BseJI	GATNNNNATC	1 cut(s)	1161
BseLI	CCNNNNNNNGG	1 cut(s)	958
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	1152
BseNI	ACTGG	3 cut(s)	60, 102, 1052
BseSI	GKGCMC	1 cut(s)	1221
BsgI	GTGCAG	1 cut(s)	1125
BshFI	GGCC	2 cut(s)	390, 951
BsiHKCI	CYCGRG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	958
BsnI	GGCC	2 cut(s)	390, 951
BsoBI	CYCGRG	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	1221
Bsp1407I	TGTACA	1 cut(s)	1170
Bsp143I	GATC	6 cut(s)	167, 523, 538, 652, 757, 1162
BspACI	CCGC	2 cut(s)	263, 1022
BspANI	GGCC	2 cut(s)	390, 951
BspCNI	CTCAG	1 cut(s)	1151
BspPI	GGATC	3 cut(s)	531, 533, 1170
BspT104I	TTCGAA	1 cut(s)	371
BspTI	CTTAAG	1 cut(s)	1009
BsrDI	GCAATG	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	1170
BsrI	ACTGG	3 cut(s)	60, 102, 1052
BssECI	CCNNGG	2 cut(s)	385, 952
BssMI	GATC	6 cut(s)	167, 523, 538, 652, 757, 1162
BssNAI	GTATAC	1 cut(s)	322
BssT1I	CCWWGG	1 cut(s)	385
Bst1107I	GTATAC	1 cut(s)	322
Bst4CI	ACNGT	2 cut(s)	51, 650
Bst6I	CTCTTC	2 cut(s)	390, 799
BstAFI	CTTAAG	1 cut(s)	1009
BstAUI	TGTACA	1 cut(s)	1170
BstBI	TTCGAA	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	1004, 1131
BstDEI	CTNAG	1 cut(s)	1138
BstF5I	GGATG	2 cut(s)	1064, 1156
BstKTI	GATC	6 cut(s)	170, 526, 541, 655, 760, 1165
BstMBI	GATC	6 cut(s)	167, 523, 538, 652, 757, 1162
BstNSI	RCATGY	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	1221
BstZ17I	GTATAC	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	390, 951
BtsCI	GGATG	2 cut(s)	1064, 1156
Cac8I	GCNNGC	2 cut(s)	1004, 1131
Cfr13I	GGNCC	2 cut(s)	314, 971
Csp6I	GTAC	5 cut(s)	131, 201, 330, 502, 1171
CviAII	CATG	7 cut(s)	437, 505, 743, 885, 958, 1018, 1069
CviQI	GTAC	5 cut(s)	131, 201, 330, 502, 1171
DdeI	CTNAG	1 cut(s)	1138
DpnI	GATC	6 cut(s)	169, 525, 540, 654, 759, 1164
DpnII	GATC	6 cut(s)	167, 523, 538, 652, 757, 1162
DraI	TTTAAA	1 cut(s)	912
DraIII	CACNNNGTG	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	390, 799
EarI	CTCTTC	2 cut(s)	390, 799
Eco130I	CCWWGG	1 cut(s)	385
Eco147I	AGGCCT	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	314, 971
Eco88I	CYCGRG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	1019
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	7 cut(s)	440, 508, 746, 888, 961, 1021, 1072
FatI	CATG	7 cut(s)	436, 504, 742, 884, 957, 1017, 1068
FauNDI	CATATG	3 cut(s)	775, 931, 1167
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	2 cut(s)	1051, 1163
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	3 cut(s)	198, 716, 920
GluI	GCNGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	1094
HaeIII	GGCC	2 cut(s)	390, 951
Hin1II	CATG	7 cut(s)	440, 508, 746, 888, 961, 1021, 1072
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HindIII	AAGCTT	2 cut(s)	293, 517
HinfI	GANTC	4 cut(s)	137, 283, 442, 986
HphI	GGTGA	2 cut(s)	70, 638
Hpy166II	GTNNAC	6 cut(s)	6, 35, 175, 322, 580, 835
Hpy188I	TCNGA	5 cut(s)	288, 657, 706, 731, 1210
Hpy188III	TCNNGA	3 cut(s)	20, 920, 1093
Hpy8I	GTNNAC	6 cut(s)	6, 35, 175, 322, 580, 835
HpyAV	CCTTC	5 cut(s)	20, 334, 584, 941, 1141
HpyCH4III	ACNGT	2 cut(s)	51, 650
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	7 cut(s)	235, 425, 859, 1002, 1017, 1106, 1199
HpyF3I	CTNAG	1 cut(s)	1138
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	7 cut(s)	440, 508, 746, 888, 961, 1021, 1072
Kzo9I	GATC	6 cut(s)	167, 523, 538, 652, 757, 1162
LmnI	GCTCC	3 cut(s)	229, 473, 568
LweI	GCATC	4 cut(s)	477, 1004, 1077, 1186
MaeI	CTAG	3 cut(s)	198, 716, 920
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	4 cut(s)	51, 70, 113, 412
MalI	GATC	6 cut(s)	169, 525, 540, 654, 759, 1164
MboI	GATC	6 cut(s)	167, 523, 538, 652, 757, 1162
MboII	GAAGA	7 cut(s)	52, 55, 407, 491, 816, 1074, 1166
MfeI	CAATTG	2 cut(s)	75, 141
MhlI	GDGCHC	1 cut(s)	1221
MluCI	AATT	8 cut(s)	75, 141, 208, 597, 642, 907, 935, 1212
MlyI	GAGTC	2 cut(s)	146, 292
MmeI	TCCRAC	1 cut(s)	998
Mph1103I	ATGCAT	1 cut(s)	1019
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	6 cut(s)	162, 335, 360, 911, 1010, 1143
MslI	CAYNNNNRTG	1 cut(s)	930
MspCI	CTTAAG	1 cut(s)	1009
MunI	CAATTG	2 cut(s)	75, 141
NdeI	CATATG	3 cut(s)	775, 931, 1167
NdeII	GATC	6 cut(s)	167, 523, 538, 652, 757, 1162
NlaIII	CATG	7 cut(s)	440, 508, 746, 888, 961, 1021, 1072
NmeAIII	GCCGAG	1 cut(s)	977
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	1019
NspI	RCATGY	1 cut(s)	508
NspV	TTCGAA	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	442, 986
PflFI	GACNNNGTC	1 cut(s)	994
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	2 cut(s)	145, 291
PpsI	GAGTC	2 cut(s)	145, 291
PspPI	GGNCC	2 cut(s)	314, 971
PspXI	VCTCGAGB	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	994
RsaI	GTAC	5 cut(s)	132, 202, 331, 503, 1172
RsaNI	GTAC	5 cut(s)	131, 201, 330, 502, 1171
RseI	CAYNNNNRTG	1 cut(s)	930
SaqAI	TTAA	6 cut(s)	162, 335, 360, 911, 1010, 1143
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	6 cut(s)	167, 523, 538, 652, 757, 1162
Sau96I	GGNCC	2 cut(s)	314, 971
ScaI	AGTACT	1 cut(s)	132
SchI	GAGTC	2 cut(s)	146, 292
SduI	GDGCHC	1 cut(s)	1221
SfaNI	GCATC	4 cut(s)	477, 1004, 1077, 1186
Sfr274I	CTCGAG	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	371
SinI	GGWCC	2 cut(s)	314, 971
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	930
SmlI	CTYRAG	4 cut(s)	18, 134, 1009, 1091
SmoI	CTYRAG	4 cut(s)	18, 134, 1009, 1091
Sse9I	AATT	8 cut(s)	75, 141, 208, 597, 642, 907, 935, 1212
SseBI	AGGCCT	1 cut(s)	390
SsiI	CCGC	2 cut(s)	263, 1022
SspMI	CTAG	3 cut(s)	198, 716, 920
StuI	AGGCCT	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	385
TaaI	ACNGT	2 cut(s)	51, 650
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	5 cut(s)	135, 281, 371, 989, 1085
TasI	AATT	8 cut(s)	75, 141, 208, 597, 642, 907, 935, 1212
TatI	WGTACW	4 cut(s)	130, 200, 501, 1170
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	442, 986
Tru1I	TTAA	6 cut(s)	162, 335, 360, 911, 1010, 1143
Tru9I	TTAA	6 cut(s)	162, 335, 360, 911, 1010, 1143
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	7 cut(s)	704, 753, 836, 873, 948, 955, 1167
Tth111I	GACNNNGTC	1 cut(s)	994
Vha464I	CTTAAG	1 cut(s)	1009
VpaK11BI	GGWCC	2 cut(s)	314, 971
XapI	RAATTY	1 cut(s)	907
XbaI	TCTAGA	1 cut(s)	919
XceI	RCATGY	1 cut(s)	508
XhoI	CTCGAG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	3 cut(s)	198, 716, 920
ZrmI	AGTACT	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.