Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

706695 .. 707069

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01383.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCTGAACCAATCTTCTCACCGGAAATCTTTCATTGATTCCTCAATTAGAACTGCTAGACTTTATGAGTTTGATGGCTTAGACATTACAGGGGCTGTACCAAGAACAGTCATGCACACTACATCTTTGGGAACATTTCTAGATGAGTGGCGCGCTGCGGTGGATTCTGAAGCAAGCAAGTCAGGAAAACCAGGTTTGCTCTTGACAATGGCACTTCATCATATGCAGGTTGTGGATACTGTAACTTATCCCATTGACTCTATTAAAAAGAACTTGAATTGGGTTCATCTTGTGGCATATGATTACTATCTTCCTAAAAAGGAAAACTACATCATTAGGTCCTGCGTTTACCACAGACGGGTCCATGTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

125

Amino Acids

14.25

Weight (kDa)

9.07

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	1 - 108	5.4e-15	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	217
AccII	CGCG	1 cut(s)	153
AciI	CCGC	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	2 cut(s)	153, 155
AspS9I	GGNCC	2 cut(s)	339, 361
AsuHPI	GGTGA	1 cut(s)	11
AvaII	GGWCC	2 cut(s)	339, 361
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	192
BciVI	GTATCC	1 cut(s)	229
BfaI	CTAG	2 cut(s)	57, 140
BfuAI	ACCTGC	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	2 cut(s)	339, 361
BmgT120I	GGNCC	2 cut(s)	339, 361
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	358
BsePI	GCGCGC	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	358
BspACI	CCGC	1 cut(s)	158
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	362
BspMI	ACCTGC	1 cut(s)	217
BssHII	GCGCGC	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	109, 241
BstC8I	GCNNGC	2 cut(s)	153, 175
BstDEI	CTNAG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	2 cut(s)	153, 155
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	153, 175
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	2 cut(s)	153, 155
Cfr13I	GGNCC	2 cut(s)	339, 361
CsiI	ACCWGGT	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	2 cut(s)	112, 365
CviJI	RGCY	2 cut(s)	78, 95
CviKI_1	RGCY	2 cut(s)	78, 95
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	79
Eco47I	GGWCC	2 cut(s)	339, 361
Eco57I	CTGAAG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	2 cut(s)	115, 368
FaiI	YATR	8 cut(s)	66, 113, 222, 224, 298, 300, 366, 373
FatI	CATG	2 cut(s)	111, 364
FauNDI	CATATG	2 cut(s)	222, 298
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	2 cut(s)	57, 140
GlaI	GCGC	2 cut(s)	152, 154
GluI	GCNGC	1 cut(s)	156
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	2 cut(s)	153, 155
Hin1II	CATG	2 cut(s)	115, 368
Hin6I	GCGC	2 cut(s)	151, 153
HinP1I	GCGC	2 cut(s)	151, 153
HinfI	GANTC	3 cut(s)	38, 164, 257
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	140, 183, 202
Hpy8I	GTNNAC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	109, 241
HpyCH4V	TGCA	2 cut(s)	115, 226
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	115, 368
HspAI	GCGC	2 cut(s)	151, 153
LpnPI	CCDG	7 cut(s)	35, 75, 168, 177, 204, 212, 355
Lsp1109I	GCAGC	1 cut(s)	142
MabI	ACCWGGT	1 cut(s)	190
MaeI	CTAG	2 cut(s)	57, 140
MaeIII	GTNAC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	6, 302
MluCI	AATT	2 cut(s)	45, 277
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	264
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	153
NdeI	CATATG	2 cut(s)	222, 298
NlaIII	CATG	2 cut(s)	115, 368
NlaIV	GGNNCC	1 cut(s)	362
PauI	GCGCGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	38, 164
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	2 cut(s)	339, 361
PspPPI	RGGWCCY	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	95
PteI	GCGCGC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	156
Sau96I	GGNCC	2 cut(s)	339, 361
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	3 cut(s)	196, 231, 341
SexAI	ACCWGGT	1 cut(s)	190
SinI	GGWCC	2 cut(s)	339, 361
Sse9I	AATT	2 cut(s)	45, 277
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	2 cut(s)	57, 140
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	109, 241
TasI	AATT	2 cut(s)	45, 277
TfiI	GAWTC	2 cut(s)	38, 164
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	22, 206, 275
VpaK11BI	GGWCC	2 cut(s)	339, 361
XbaI	TCTAGA	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	2 cut(s)	57, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.