Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

21600759 .. 21601284

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G258900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGCAGTACCACCGGATGGATCAGCGGGTTACAACCTAATCAAGGCATATATAGCTGAGAATGGTGCACCAACTGTGTTTAATTCTACACTTGTTATGGACTATTCCTATACTGGGAAGACTTGGATTGGTTATGATGATAGGCAGAGTATCACTACCAAAGTTTTGTATGCTAAGCGAAAAGGACTACTGGGATCCATGTCCATGTCAATTGGACTCTTTCAGATGCAGCTTCATGCGCATGGGGAGCATAGGGCCACTACTTTTCCTACCAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0007586 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016192 GO:0016787 GO:0016798 GO:0017144 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032501 GO:0032940 GO:0034774 GO:0035580 GO:0036230 GO:0042119 GO:0042581 GO:0042737 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044237 GO:0044245 GO:0044248 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046348 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060205 GO:0070013 GO:0070820 GO:0071704 GO:0097367 GO:0097708 GO:0099503 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1904724

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

94

Amino Acids

10.3

Weight (kDa)

9.57

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	240
AccB7I	CCANNNNNTGG	1 cut(s)	17
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	3 cut(s)	28, 189, 202
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	3 cut(s)	17, 43, 114
AluBI	AGCT	2 cut(s)	56, 232
AluI	AGCT	2 cut(s)	56, 232
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	3 cut(s)	28, 189, 202
AoxI	GGCC	1 cut(s)	255
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	255
BaeGI	GKGCMC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	230
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	196
BmrI	ACTGGG	2 cut(s)	123, 200
BmsI	GCATC	1 cut(s)	216
BmuI	ACTGGG	2 cut(s)	123, 200
BpiI	GAAGAC	1 cut(s)	125
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 43, 114
Bse1I	ACTGG	2 cut(s)	118, 195
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	3 cut(s)	17, 43, 114
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	118, 195
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	3 cut(s)	17, 43, 114
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	20, 194
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	3 cut(s)	28, 189, 202
BsrI	ACTGG	2 cut(s)	118, 195
BssMI	GATC	2 cut(s)	20, 194
Bst4CI	ACNGT	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	57, 174
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	2 cut(s)	23, 197
BstMBI	GATC	2 cut(s)	20, 194
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 238, 247
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	4 cut(s)	199, 205, 236, 242
CviJI	RGCY	3 cut(s)	56, 232, 257
CviKI_1	RGCY	3 cut(s)	56, 232, 257
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	2 cut(s)	57, 174
DpnI	GATC	2 cut(s)	22, 196
DpnII	GATC	2 cut(s)	20, 194
EcoNI	CCTNNNNNAGG	1 cut(s)	41
FaeI	CATG	4 cut(s)	202, 208, 239, 245
FatI	CATG	4 cut(s)	198, 204, 235, 241
FauI	CCCGC	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	230
FspAI	RTGCGCAY	1 cut(s)	240
FspI	TGCGCA	1 cut(s)	240
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	14
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	4 cut(s)	202, 208, 239, 245
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	68, 229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 238, 247
HpyF3I	CTNAG	2 cut(s)	57, 174
Hsp92II	CATG	4 cut(s)	202, 208, 239, 245
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	20, 194
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	3 cut(s)	27, 99, 176
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	2 cut(s)	22, 196
MboI	GATC	2 cut(s)	20, 194
MboII	GAAGA	1 cut(s)	130
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	82, 210
MlyI	GAGTC	1 cut(s)	210
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	2 cut(s)	203, 240
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	14
MunI	CAATTG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	53, 238, 247
NdeII	GATC	2 cut(s)	20, 194
NlaIII	CATG	4 cut(s)	202, 208, 239, 245
NlaIV	GGNNCC	1 cut(s)	196
NsbI	TGCGCA	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	2 cut(s)	203, 240
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	20, 194
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	3 cut(s)	39, 58, 234
SfaNI	GCATC	1 cut(s)	216
SmiMI	CAYNNNNRTG	2 cut(s)	203, 240
Sse9I	AATT	2 cut(s)	82, 210
SsiI	CCGC	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	2 cut(s)	82, 210
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.