Rh2CG017400

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000775
Physical Location & Seq
Forward (+)
1375170 .. 1375466
297 bp
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UTR
Exon/CDS
Intron
Rh2CG017400.1

Sequence Viewer

Length: 297 bp
ATGGGATTGCCTTACCATGGCTATGCGTGGACTCTTGCGAACCCGAATGACAATGGAATTGGAGCGCCTGCAGCTGGTCCAGCTGTACCACAAGAGGTCTACTCAAAAGCGAAAGTACAGCCATCAATGCTAGAGGTTTGTTCAATGCTCAAGAGCGAAAGTGTGACCATCAATATTAGTCCTAAAAAGCCTACTTTCTCAGTTAAGAAGGATGAAGATGAAGATCATATGTACAAATTCAGGAAAGAAATTTATTCAGTCAATGATGCAACAATGTACGAAATTGTGCCCCGATGA

Protein Analysis

98

Amino Acids

10.92

Weight (kDa)

6.07

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AcsI RAATTY 2 cut(s) 236, 249
AfaI GTAC 4 cut(s) 87, 117, 233, 278
AfiI CCNNNNNNNGG 2 cut(s) 17, 74
AgsI TTSAA 1 cut(s) 144
AluBI AGCT 2 cut(s) 74, 83
AluI AGCT 2 cut(s) 74, 83
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 236, 249
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 130, 176
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmsI GCATC 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpuEI CTTGAG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 74
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 217
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 17, 74
BseMII CTCAG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 17, 74
Bsp1286I GDGCHC 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 1 cut(s) 223
Bsp19I CCATGG 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 212
BspMAI CTGCAG 1 cut(s) 73
BsrGI TGTACA 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 199
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 3 cut(s) 71, 80, 127
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 4 cut(s) 86, 116, 232, 277
CviAII CATG 1 cut(s) 17
CviJI RGCY 5 cut(s) 21, 74, 83, 121, 190
CviKI_1 RGCY 5 cut(s) 21, 74, 83, 121, 190
CviQI GTAC 4 cut(s) 86, 116, 232, 277
DdeI CTNAG 1 cut(s) 199
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 1 cut(s) 20
FaiI YATR 4 cut(s) 18, 24, 228, 230
FatI CATG 1 cut(s) 16
FauNDI CATATG 1 cut(s) 228
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 131
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 68
HhaI GCGC 1 cut(s) 67
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 30, 100
Hpy188III TCNNGA 2 cut(s) 151, 241
Hpy8I GTNNAC 2 cut(s) 30, 100
HpyAV CCTTC 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 71, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 80, 127
HpyF3I CTNAG 1 cut(s) 199
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 4 cut(s) 60, 81, 93, 226
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 2 cut(s) 227, 233
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 4 cut(s) 57, 236, 249, 282
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 88, 127
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 2 cut(s) 74, 83
MwoI GCNNNNNNNGC 3 cut(s) 71, 80, 127
NcoI CCATGG 1 cut(s) 16
NdeI CATATG 1 cut(s) 228
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 77
PstI CTGCAG 1 cut(s) 73
PvuII CAGCTG 2 cut(s) 74, 83
RsaI GTAC 4 cut(s) 87, 117, 233, 278
RsaNI GTAC 4 cut(s) 86, 116, 232, 277
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 291
SetI ASST 4 cut(s) 76, 85, 99, 138
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 4 cut(s) 57, 236, 249, 282
SspI AATATT 1 cut(s) 175
SspMI CTAG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 16
TasI AATT 4 cut(s) 57, 236, 249, 282
TatI WGTACW 2 cut(s) 115, 231
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 228, 234
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 2 cut(s) 236, 249
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.