Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

55896689 .. 55897281

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0466400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGGCCTGGCGGTGTTCTCTGTAACATGGCAGAGAGTATGTGGCTCCATACACATCTTATTGAAGATATGATCTCTGTTTGCCGTCTAACATTCAAGGGGTCAGTCAACTATGCATGGACGAGTGTTCCTACATATCCAAGTGGTGTTATAGGTTTTCTGCTATGCTCAACAGAAGGGCCTCCTGTTGATTTTAAAAATCCAGTCAACTCCATTGAGAAGTTGGAAGGAGCTGTCAAACACAGAAGAGAACTTCGGTTCTATAACTCTGAGATGCACTCAGCTGCCTTTGCCTTCCTGCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

102

Amino Acids

11.5

Weight (kDa)

6.89

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synth	PF01564	2 - 67	1.2e-12	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	65, 97
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	2 cut(s)	233, 284
AluI	AGCT	2 cut(s)	233, 284
AoxI	GGCC	2 cut(s)	5, 179
ApeKI	GCWGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	1 cut(s)	264
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	261, 294
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	2 cut(s)	7, 181
BsnI	GGCC	2 cut(s)	7, 181
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	7, 181
BspCNI	CTCAG	2 cut(s)	262, 293
BspLI	GGNNCC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	9
Bst6I	CTCTTC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	270, 280
BstKTI	GATC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	7, 181
Cfr13I	GGNCC	1 cut(s)	179
CviAII	CATG	2 cut(s)	28, 117
CviJI	RGCY	5 cut(s)	7, 46, 181, 233, 284
CviKI_1	RGCY	5 cut(s)	7, 46, 181, 233, 284
DdeI	CTNAG	2 cut(s)	270, 280
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DraI	TTTAAA	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	7
EcoT22I	ATGCAT	1 cut(s)	118
FaeI	CATG	2 cut(s)	31, 120
FatI	CATG	2 cut(s)	27, 116
Fnu4HI	GCNGC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	285
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	7, 181
Hin1II	CATG	2 cut(s)	31, 120
HincII	GTYRAC	2 cut(s)	109, 208
HindII	GTYRAC	2 cut(s)	109, 208
Hpy166II	GTNNAC	2 cut(s)	109, 208
Hpy188I	TCNGA	1 cut(s)	271
Hpy8I	GTNNAC	2 cut(s)	109, 208
HpyAV	CCTTC	3 cut(s)	170, 221, 304
HpyCH4V	TGCA	2 cut(s)	116, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	270, 280
Hsp92II	CATG	2 cut(s)	31, 120
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	51, 230
LpnPI	CCDG	3 cut(s)	21, 198, 216
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	2 cut(s)	77, 258
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	1 cut(s)	192
Mph1103I	ATGCAT	1 cut(s)	118
MseI	TTAA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	31, 120
NlaIV	GGNNCC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	3 cut(s)	157, 235, 286
SfaNI	GCATC	1 cut(s)	264
SgeI	CNNG	9 cut(s)	20, 21, 40, 109, 129, 135, 153, 197, 215
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	1 cut(s)	12
StuI	AGGCCT	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseI	GCWGC	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.