Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

1180355 .. 1180993

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG016300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCAATACCATTTATCAGTAGCTACCAAAGTTCTCCTCCTCTTTCTCTTTTCTACGCACTTCAATTGTTCTTACACTCAGTCATGGATCAAAGCCGGTTACCATTACACCGGTATTGAATTCCCTGTCTCTGACATAGAATCCACATTGTTCACTCACCTTATATGTGGTTTTGCCCATATAAACTCTTCCACTTACCAGCTCTCAATCAACTCCTCCACCCAACAAGAATTCTCCACTTTCACAAATGTTGTCAAGCGCAAAAACCCACAAGTCACAGCCTTGCTATCCATCTGGGGTGGAGGAGAAGACTATTCAGTGTTGTTTTCATTGCTGAACCAGTCTTCTCACCGGAGATCTTTCATTGAATCGTCATTAACGACAGCCAGAGATTATGAGTTTGATGGGCTAGACCTTTCTGGGGTTGTGCCAAGAACAGGCATGCACACCACATCTTTGGGAACATTTCTAAATGAGTGGCGTGCTGCGGTGGATTCTGAAGCCAAAAAGTCAGGAAAGTCAGGTTTGCTCTTGACAATGGCACTTTATCATCATATGCAGGTTATGGACACCGTGACTTATCTGATTGACTCAATTAAGAAGTACTTGAATTGGGTTCATCTTGTGGGTGGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.85

Weight (kDa)

6.79

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	41 - 208	3.7e-24	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	550
AciI	CCGC	1 cut(s)	488
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	119, 230
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	2 cut(s)	421, 437
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	4 cut(s)	64, 119, 368, 610
AluBI	AGCT	2 cut(s)	23, 202
AluI	AGCT	2 cut(s)	23, 202
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	2 cut(s)	119, 230
AsiGI	ACCGGT	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	149, 341
BbsI	GAAGAC	2 cut(s)	315, 336
BbvI	GCAGC	1 cut(s)	472
BccI	CCATC	2 cut(s)	299, 398
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	410
BfuAI	ACCTGC	1 cut(s)	550
BglII	AGATCT	1 cut(s)	356
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
BmcAI	AGTACT	1 cut(s)	605
BpiI	GAAGAC	2 cut(s)	315, 336
BsaWI	WCCGGW	2 cut(s)	110, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 437
Bse118I	RCCGGY	2 cut(s)	95, 110
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	2 cut(s)	421, 437
BseMI	GCAATG	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	4 cut(s)	26, 29, 205, 318
BseXI	GCAGC	1 cut(s)	472
BshTI	ACCGGT	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	96, 111, 352
BslI	CCNNNNNNNGG	2 cut(s)	421, 437
BsmAI	GTCTC	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	87, 356
BspACI	CCGC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	329
BsrFI	RCCGGY	2 cut(s)	95, 110
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	2 cut(s)	95, 110
BssMI	GATC	2 cut(s)	87, 356
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	443, 483
BstDEI	CTNAG	1 cut(s)	78
BstEII	GGTNACC	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	2 cut(s)	90, 359
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	87, 356
BstNSI	RCATGY	1 cut(s)	445
BstPI	GGTNACC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	2 cut(s)	315, 336
BstX2I	RGATCY	1 cut(s)	356
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	2 cut(s)	443, 483
CfoI	GCGC	1 cut(s)	261
Cfr10I	RCCGGY	2 cut(s)	95, 110
Csp6I	GTAC	1 cut(s)	604
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	2 cut(s)	84, 442
CviJI	RGCY	7 cut(s)	23, 95, 202, 281, 386, 409, 503
CviKI_1	RGCY	7 cut(s)	23, 95, 202, 281, 386, 409, 503
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	89, 358
DpnII	GATC	2 cut(s)	87, 356
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	519
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoRI	GAATTC	2 cut(s)	119, 230
FaeI	CATG	2 cut(s)	87, 445
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FatI	CATG	2 cut(s)	83, 441
FauNDI	CATATG	2 cut(s)	555, 635
Fnu4HI	GCNGC	1 cut(s)	486
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	1 cut(s)	486
HapII	CCGG	3 cut(s)	96, 111, 352
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	87, 445
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	4 cut(s)	140, 368, 494, 590
HpaII	CCGG	3 cut(s)	96, 111, 352
HphI	GGTGA	2 cut(s)	149, 341
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	3 cut(s)	133, 499, 585
Hpy188III	TCNNGA	2 cut(s)	513, 532
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4V	TGCA	3 cut(s)	4, 445, 559
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	87, 445
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	87, 356
Lsp1109I	GCAGC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	3 cut(s)	98, 274, 574
MalI	GATC	2 cut(s)	89, 358
MboI	GATC	2 cut(s)	87, 356
MboII	GAAGA	3 cut(s)	180, 320, 336
MfeI	CAATTG	1 cut(s)	64
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	5 cut(s)	64, 119, 230, 594, 610
MlyI	GAGTC	1 cut(s)	584
MnlI	CCTC	4 cut(s)	47, 50, 226, 296
MseI	TTAA	2 cut(s)	377, 597
MspI	CCGG	3 cut(s)	96, 111, 352
MunI	CAATTG	1 cut(s)	64
NdeI	CATATG	2 cut(s)	555, 635
NdeII	GATC	2 cut(s)	87, 356
NlaIII	CATG	2 cut(s)	87, 445
NmuCI	GTSAC	2 cut(s)	274, 574
NspI	RCATGY	1 cut(s)	445
PaeI	GCATGC	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	140, 368, 494
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PspEI	GGTNACC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
SaqAI	TTAA	2 cut(s)	377, 597
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	2 cut(s)	87, 356
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	1 cut(s)	584
SetI	ASST	6 cut(s)	25, 162, 204, 417, 526, 564
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	5 cut(s)	64, 119, 230, 594, 610
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	574
TasI	AATT	5 cut(s)	64, 119, 230, 594, 610
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	3 cut(s)	140, 368, 494
Tru1I	TTAA	2 cut(s)	377, 597
Tru9I	TTAA	2 cut(s)	377, 597
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	274, 574
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	2 cut(s)	274, 574
TspDTI	ATGAA	3 cut(s)	318, 352, 608
TspRI	CASTG	1 cut(s)	324
XapI	RAATTY	2 cut(s)	119, 230
XceI	RCATGY	1 cut(s)	445
XspI	CTAG	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.