Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Reverse (-)

6533171 .. 6534313

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG039800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTTGTTGAAAATGCAATACCAATTATCAATAGCTACCAAAGTTCTCCTCCTCTTTCTCGTTTCTGCGAACTTCAATTGTTCTAACACTCAGTCATGGATCAAAGCCGGTTACCATCACGCCGGTGATTTCCCTGTTTCTGACATAGATTCCACATTGTTCACTCACCTTATATGTGGTTTTGCCTATATAAACTCTTCCACTTACCAGCTGTCAATCAACTCCTCCACCCAACAAGAATTCTCCACTTTCACAAATGTTGTCAAGCGCAAAAACCCAAAAGTCTCAACCTTGCTATCCATCCGGGGTGGCAGAGAAGACTATTCAGTGTTGTTTTCTCTGCTGAACCAGTCTTCTCACCGGAGATCTTTCATTGAATCTTCAATAACGACAGCTAGACTTTATAAGTTTGATGGGCTAGACCTTTCTAGGGTTGTGCCAAGAACAAGCATGCACACCACATCTTTGGGAACATTTCTAAATGAGTGGCGTGCTGCGGTGGATTCTGAAGCAGGAAAGTCAGGAAAGTCAGGTTTGCTCTTGACAATGGCACTTTATCATCATATGCAGGTTATGGACACCGTGACTGATCCGATTGACTCAATTAGGAAGAACTTGAATTGGGTTCATCTTGTGGCATATGATTACTATCTTCCAAAAGAGGAAAACTTCACACACCCTCATGCTGCTTTATATGACCCACTATCGAATGGGACTAACACGAATAGTCGTGTTAAGGACTTGATAAGCAGAGGACTACCGGCTAGCAAGCTGGTTTTAGGCTTGCCTTACCATGGTTATGGTTGGACTCTTGTGAATCCCAACGACTATAATGTTGGTGCAGCGGCATCAGGTCCTGCGTTTACCAAAGACGGGTCCATGTCCTATAAGTTCATCAAATGGTCCATTAAGCAGAAATATGGATCTGGTGCAGTTCCTATGTACAATGACACTTCTGTGGTGAATTACTGCACAATGTGGTCAAGCTGGATTAATTTTGATGATGTAGAGGCTATCAGCGCGAAAGTTTCTTATGCTAAGAAGATGGGGCTTCTTGGCTACAATGTGTTTCAAGTTGGCAATGATGACAATTGGGTGCTCTCTAGGGCAGCAGGTAGGTTGATATTAGCTTCCTGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

380

Amino Acids

42.54

Weight (kDa)

9.07

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	44 - 362	3.1e-53	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
Acc36I	ACCTGC	2 cut(s)	559, 1103
AccII	CGCG	1 cut(s)	1022
AciI	CCGC	2 cut(s)	497, 845
AclWI	GGATC	3 cut(s)	107, 584, 931
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	528
AdeI	CACNNNGTG	1 cut(s)	978
AfaI	GTAC	1 cut(s)	944
AfiI	CCNNNNNNNGG	3 cut(s)	430, 794, 873
AgsI	TTSAA	6 cut(s)	10, 76, 377, 384, 619, 1073
AjnI	CCWGG	1 cut(s)	1133
AleI	CACNNNNGTG	2 cut(s)	123, 956
AluBI	AGCT	6 cut(s)	35, 211, 395, 772, 987, 1130
AluI	AGCT	6 cut(s)	35, 211, 395, 772, 987, 1130
Alw21I	GWGCWC	1 cut(s)	1101
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	3 cut(s)	107, 584, 931
AlwNI	CAGNNNCTG	1 cut(s)	857
ApeKI	GCWGC	4 cut(s)	494, 686, 842, 1109
ApoI	RAATTY	1 cut(s)	239
AseI	ATTAAT	1 cut(s)	993
AspLEI	GCGC	2 cut(s)	270, 1022
AspS9I	GGNCC	3 cut(s)	854, 876, 903
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	4 cut(s)	137, 158, 350, 973
AsuNHI	GCTAGC	1 cut(s)	764
AvaII	GGWCC	3 cut(s)	854, 876, 903
BbsI	GAAGAC	2 cut(s)	324, 345
Bbv12I	GWGCWC	1 cut(s)	1101
BbvI	GCAGC	4 cut(s)	481, 673, 854, 1121
BccI	CCATC	4 cut(s)	123, 308, 407, 1039
BciT130I	CCWGG	1 cut(s)	1135
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	5 cut(s)	396, 419, 429, 765, 1104
BfuAI	ACCTGC	2 cut(s)	559, 1103
BglII	AGATCT	1 cut(s)	365
BisI	GCNGC	5 cut(s)	495, 687, 843, 846, 1110
BlsI	GCNGC	5 cut(s)	496, 688, 844, 847, 1111
Bme1390I	CCNGG	2 cut(s)	305, 1135
Bme18I	GGWCC	3 cut(s)	854, 876, 903
BmgT120I	GGNCC	3 cut(s)	854, 876, 903
BmiI	GGNNCC	1 cut(s)	877
BmrFI	CCNGG	2 cut(s)	305, 1135
BmsI	GCATC	1 cut(s)	857
BmtI	GCTAGC	1 cut(s)	768
BpiI	GAAGAC	2 cut(s)	324, 345
BpuMI	CCSGG	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	304, 793
BsaWI	WCCGGW	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	3 cut(s)	430, 794, 873
Bse118I	RCCGGY	3 cut(s)	107, 122, 760
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	1087
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	1135
BseDI	CCNNGG	2 cut(s)	304, 793
BseGI	GGATG	1 cut(s)	300
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	3 cut(s)	430, 794, 873
BseMI	GCAATG	1 cut(s)	1087
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	3 cut(s)	38, 41, 214
BseXI	GCAGC	4 cut(s)	481, 673, 854, 1121
BsgI	GTGCAG	3 cut(s)	861, 951, 955
Bsh1236I	CGCG	1 cut(s)	1022
BsiHKAI	GWGCWC	1 cut(s)	1101
BsiSI	CCGG	5 cut(s)	108, 123, 304, 361, 761
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	3 cut(s)	430, 794, 873
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	727
Bsp1286I	GDGCHC	1 cut(s)	1101
Bsp1407I	TGTACA	1 cut(s)	942
Bsp143I	GATC	4 cut(s)	99, 365, 589, 923
Bsp19I	CCATGG	1 cut(s)	793
BspACI	CCGC	2 cut(s)	497, 845
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	1022
BspLI	GGNNCC	1 cut(s)	877
BspMI	ACCTGC	2 cut(s)	559, 1103
BspOI	GCTAGC	1 cut(s)	768
BspPI	GGATC	3 cut(s)	107, 584, 931
BsrDI	GCAATG	1 cut(s)	1087
BsrFI	RCCGGY	3 cut(s)	107, 122, 760
BsrGI	TGTACA	1 cut(s)	942
BsrI	ACTGG	1 cut(s)	349
BssAI	RCCGGY	3 cut(s)	107, 122, 760
BssECI	CCNNGG	2 cut(s)	304, 793
BssMI	GATC	4 cut(s)	99, 365, 589, 923
BssT1I	CCWWGG	1 cut(s)	793
Bst2UI	CCWGG	1 cut(s)	1135
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	1 cut(s)	202
BstAUI	TGTACA	1 cut(s)	942
BstC8I	GCNNGC	5 cut(s)	452, 492, 766, 770, 785
BstDEI	CTNAG	2 cut(s)	90, 1038
BstDSI	CCRYGG	1 cut(s)	793
BstEII	GGTNACC	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	1022
BstHHI	GCGC	2 cut(s)	270, 1022
BstKTI	GATC	4 cut(s)	102, 368, 592, 926
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	4 cut(s)	99, 365, 589, 923
BstMWI	GCNNNNNNNGC	1 cut(s)	1019
BstNI	CCWGG	1 cut(s)	1135
BstNSI	RCATGY	1 cut(s)	454
BstPI	GGTNACC	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	303, 1133
BstUI	CGCG	1 cut(s)	1022
BstV1I	GCAGC	4 cut(s)	481, 673, 854, 1121
BstV2I	GAAGAC	2 cut(s)	324, 345
BstX2I	RGATCY	2 cut(s)	365, 923
BstXI	CCANNNNNNTGG	2 cut(s)	466, 800
BstYI	RGATCY	2 cut(s)	365, 923
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	333
BveI	ACCTGC	2 cut(s)	559, 1103
Cac8I	GCNNGC	5 cut(s)	452, 492, 766, 770, 785
CaiI	CAGNNNCTG	1 cut(s)	857
CfoI	GCGC	2 cut(s)	270, 1022
Cfr10I	RCCGGY	3 cut(s)	107, 122, 760
Cfr13I	GGNCC	3 cut(s)	854, 876, 903
Csp6I	GTAC	1 cut(s)	943
CviAII	CATG	5 cut(s)	96, 451, 683, 794, 880
CviQI	GTAC	1 cut(s)	943
DdeI	CTNAG	2 cut(s)	90, 1038
DpnI	GATC	4 cut(s)	101, 367, 591, 925
DpnII	GATC	4 cut(s)	99, 365, 589, 923
DraIII	CACNNNGTG	1 cut(s)	978
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	793
Eco47I	GGWCC	3 cut(s)	854, 876, 903
Eco57I	CTGAAG	1 cut(s)	528
Eco91I	GGTNACC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	854
EcoO65I	GGTNACC	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	1133
EcoT14I	CCWWGG	1 cut(s)	793
ErhI	CCWWGG	1 cut(s)	793
FaeI	CATG	5 cut(s)	99, 454, 686, 797, 883
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	5 cut(s)	95, 450, 682, 793, 879
FauNDI	CATATG	2 cut(s)	564, 640
Fnu4HI	GCNGC	5 cut(s)	495, 687, 843, 846, 1110
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	5 cut(s)	495, 687, 843, 846, 1110
FspBI	CTAG	5 cut(s)	396, 419, 429, 765, 1104
GlaI	GCGC	2 cut(s)	269, 1021
GluI	GCNGC	5 cut(s)	495, 687, 843, 846, 1110
HapII	CCGG	5 cut(s)	108, 123, 304, 361, 761
HhaI	GCGC	2 cut(s)	270, 1022
Hin1II	CATG	5 cut(s)	99, 454, 686, 797, 883
Hin6I	GCGC	2 cut(s)	268, 1020
HinP1I	GCGC	2 cut(s)	268, 1020
HinfI	GANTC	6 cut(s)	149, 377, 503, 599, 808, 817
HpaII	CCGG	5 cut(s)	108, 123, 304, 361, 761
HphI	GGTGA	4 cut(s)	137, 158, 350, 973
Hpy166II	GTNNAC	2 cut(s)	162, 864
Hpy188I	TCNGA	3 cut(s)	142, 508, 594
Hpy188III	TCNNGA	2 cut(s)	522, 541
Hpy8I	GTNNAC	2 cut(s)	162, 864
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4V	TGCA	6 cut(s)	16, 454, 568, 842, 932, 972
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1019
HpyF3I	CTNAG	2 cut(s)	90, 1038
Hsp92II	CATG	5 cut(s)	99, 454, 686, 797, 883
HspAI	GCGC	2 cut(s)	268, 1020
Kzo9I	GATC	4 cut(s)	99, 365, 589, 923
Lsp1109I	GCAGC	4 cut(s)	481, 673, 854, 1121
LweI	GCATC	1 cut(s)	857
MaeI	CTAG	5 cut(s)	396, 419, 429, 765, 1104
MaeIII	GTNAC	2 cut(s)	110, 583
MalI	GATC	4 cut(s)	101, 367, 591, 925
MboI	GATC	4 cut(s)	99, 365, 589, 923
MboII	GAAGA	7 cut(s)	189, 329, 345, 372, 622, 644, 1054
MfeI	CAATTG	2 cut(s)	76, 1090
MflI	RGATCY	2 cut(s)	365, 923
MhlI	GDGCHC	1 cut(s)	1101
MluCI	AATT	8 cut(s)	23, 76, 239, 603, 619, 964, 994, 1090
MlyI	GAGTC	2 cut(s)	593, 802
MmeI	TCCRAC	1 cut(s)	785
MnlI	CCTC	7 cut(s)	59, 62, 235, 655, 690, 746, 1003
MseI	TTAA	3 cut(s)	735, 909, 993
MslI	CAYNNNNRTG	4 cut(s)	123, 681, 798, 956
MspA1I	CMGCKG	2 cut(s)	211, 845
MspI	CCGG	5 cut(s)	108, 123, 304, 361, 761
MspR9I	CCNGG	2 cut(s)	305, 1135
MunI	CAATTG	2 cut(s)	76, 1090
MvaI	CCWGG	1 cut(s)	1135
MvnI	CGCG	1 cut(s)	1022
MwoI	GCNNNNNNNGC	1 cut(s)	1019
NciI	CCSGG	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	793
NdeI	CATATG	2 cut(s)	564, 640
NdeII	GATC	4 cut(s)	99, 365, 589, 923
NheI	GCTAGC	1 cut(s)	764
NlaIII	CATG	5 cut(s)	99, 454, 686, 797, 883
NlaIV	GGNNCC	1 cut(s)	877
NmuCI	GTSAC	1 cut(s)	583
NspI	RCATGY	1 cut(s)	454
OliI	CACNNNNGTG	2 cut(s)	123, 956
PaeI	GCATGC	1 cut(s)	454
PfeI	GAWTC	4 cut(s)	149, 377, 503, 817
PkrI	GCNGC	5 cut(s)	496, 688, 844, 847, 1111
PleI	GAGTC	2 cut(s)	593, 802
PpsI	GAGTC	2 cut(s)	593, 802
PpuMI	RGGWCCY	1 cut(s)	854
PshBI	ATTAAT	1 cut(s)	993
PsiI	TTATAA	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	1 cut(s)	1133
PspEI	GGTNACC	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	1133
PspN4I	GGNNCC	1 cut(s)	877
PspPI	GGNCC	3 cut(s)	854, 876, 903
PspPPI	RGGWCCY	1 cut(s)	854
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	2 cut(s)	365, 923
PvuII	CAGCTG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	944
RsaNI	GTAC	1 cut(s)	943
RseI	CAYNNNNRTG	4 cut(s)	123, 681, 798, 956
SaqAI	TTAA	3 cut(s)	735, 909, 993
SatI	GCNGC	5 cut(s)	495, 687, 843, 846, 1110
Sau3AI	GATC	4 cut(s)	99, 365, 589, 923
Sau96I	GGNCC	3 cut(s)	854, 876, 903
SchI	GAGTC	2 cut(s)	593, 802
ScrFI	CCNGG	2 cut(s)	305, 1135
SduI	GDGCHC	1 cut(s)	1101
SfaNI	GCATC	1 cut(s)	857
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	3 cut(s)	854, 876, 903
SmiMI	CAYNNNNRTG	4 cut(s)	123, 681, 798, 956
SphI	GCATGC	1 cut(s)	454
Sse9I	AATT	8 cut(s)	23, 76, 239, 603, 619, 964, 994, 1090
SsiI	CCGC	2 cut(s)	497, 845
SspMI	CTAG	5 cut(s)	396, 419, 429, 765, 1104
StyD4I	CCNGG	2 cut(s)	303, 1133
StyI	CCWWGG	1 cut(s)	793
TaaI	ACNGT	1 cut(s)	583
TaqI	TCGA	1 cut(s)	707
TasI	AATT	8 cut(s)	23, 76, 239, 603, 619, 964, 994, 1090
TatI	WGTACW	1 cut(s)	942
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	4 cut(s)	149, 377, 503, 817
Tru1I	TTAA	3 cut(s)	735, 909, 993
Tru9I	TTAA	3 cut(s)	735, 909, 993
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	4 cut(s)	494, 686, 842, 1109
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	3 cut(s)	361, 617, 883
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	3 cut(s)	854, 876, 903
VspI	ATTAAT	1 cut(s)	993
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	454
XspI	CTAG	5 cut(s)	396, 419, 429, 765, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.