Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00700

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Reverse (-)

13920 .. 22140

Gene Structure 8221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G015400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCTCAATCAGTCTTCTAGCAGAAGGTCCTTCATTGAGTATTCAATCCAAACCGCAAGGCGCTACGACCTTTGGGGTATAGACTTGTTTTGGCTATGGCCTAACACAGAAGCAGATATGATCAATTTGAGAAAGCTGTTGGATGAATGGAGAGCTGCTGTGGATTCTGAGTCAAGAAACTCAAGTCAGTCGAAATTAAAGCTGACAATGGCTGTTAAATATGTGCCATCTTTCGGATCAATGACTTATCTGATTGAGTCTATGAAGAAGAACTTGGATTTTGCACATGCGGTGGCGTATGACTATCATCTGCCTTTGAAGGAAAATGCACACAAAATTCAATTTCCTTCAATAGACTATGGTATAAGGCAGTGGCTAAACAATTCATTTTCGGGTAGCAAACTGGTTATGGGATTGCCTTACCATGGCTATACGTGGACTCTTGCAAACCCGAATGACAATGGAATTGGAGCACCTGCAGCTGGTCCAGCTGTACCACAAGAGGTATACTCAAGAGCGAAAGTGCAACCATCAATGCTAGAGGTTTGTTCAATGCTCAAGAGCGAAAGTGTAGCCATCAATATTAGTCCCAAAAAGCCTGCTTTCTCAGTTAAGAAGGATGAAGATGAGGATCATATGTACAAATTCAGGGAAGAAATCTATTCAGTCAATGATGCAACAATGTACGAAATTTCACAAAATCTAGGGTGCCCAATTATTATGATGAATGCAAATAACCCCAAAATTGTAATACTGGTTTTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

255

Amino Acids

29.09

Weight (kDa)

6.53

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	1 - 216	2e-28	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	507
AciI	CCGC	2 cut(s)	54, 290
AclWI	GGATC	2 cut(s)	244, 639
AcsI	RAATTY	3 cut(s)	336, 644, 690
AfaI	GTAC	3 cut(s)	495, 641, 686
AfiI	CCNNNNNNNGG	3 cut(s)	233, 425, 482
AgsI	TTSAA	5 cut(s)	45, 319, 341, 351, 552
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	5 cut(s)	136, 155, 202, 482, 491
AluI	AGCT	5 cut(s)	136, 155, 202, 482, 491
Alw21I	GWGCWC	1 cut(s)	475
AlwI	GGATC	2 cut(s)	244, 639
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	155, 479
ApoI	RAATTY	3 cut(s)	336, 644, 690
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	27, 485
AvaII	GGWCC	2 cut(s)	27, 485
BaeGI	GKGCMC	1 cut(s)	713
BanI	GGYRCC	1 cut(s)	708
BbsI	GAAGAC	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	142, 491
BccI	CCATC	3 cut(s)	235, 538, 584
BclI	TGATCA	1 cut(s)	120
BfaI	CTAG	3 cut(s)	18, 539, 704
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	2 cut(s)	156, 480
BlsI	GCNGC	2 cut(s)	157, 481
Bme18I	GGWCC	2 cut(s)	27, 485
BmgT120I	GGNCC	2 cut(s)	27, 485
BmiI	GGNNCC	1 cut(s)	710
BmsI	GCATC	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	6
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpuEI	CTTGAG	3 cut(s)	166, 496, 542
BsaAI	YACGTR	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 425, 482
Bse1I	ACTGG	2 cut(s)	408, 759
Bse8I	GATNNNNATC	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	2 cut(s)	148, 625
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	3 cut(s)	233, 425, 482
BseMII	CTCAG	2 cut(s)	159, 621
BseNI	ACTGG	2 cut(s)	408, 759
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	2 cut(s)	142, 491
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	475
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	3 cut(s)	233, 425, 482
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	475, 713
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	3 cut(s)	120, 236, 631
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	2 cut(s)	54, 290
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	2 cut(s)	160, 620
BspLI	GGNNCC	1 cut(s)	710
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	244, 639
BspT107I	GGYRCC	1 cut(s)	708
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	408, 759
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	3 cut(s)	120, 236, 631
BssNAI	GTATAC	1 cut(s)	508
BssT1I	CCWWGG	1 cut(s)	424
Bst1107I	GTATAC	1 cut(s)	508
BstAUI	TGTACA	1 cut(s)	639
BstBAI	YACGTR	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	2 cut(s)	168, 607
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	2 cut(s)	148, 625
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	123, 239, 634
BstMBI	GATC	3 cut(s)	120, 236, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 488
BstNSI	RCATGY	1 cut(s)	290
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	713
BstV1I	GCAGC	2 cut(s)	142, 491
BstV2I	GAAGAC	1 cut(s)	6
BstZ17I	GTATAC	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	100
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	148, 625
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	600
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	27, 485
Csp6I	GTAC	3 cut(s)	494, 640, 685
CviAII	CATG	2 cut(s)	287, 425
CviQI	GTAC	3 cut(s)	494, 640, 685
DdeI	CTNAG	2 cut(s)	168, 607
DpnI	GATC	3 cut(s)	122, 238, 633
DpnII	GATC	3 cut(s)	120, 236, 631
Eco130I	CCWWGG	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	27, 485
EcoO109I	RGGNCCY	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	2 cut(s)	290, 428
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	2 cut(s)	286, 424
FauNDI	CATATG	1 cut(s)	636
FbaI	TGATCA	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	2 cut(s)	156, 480
FokI	GGATG	2 cut(s)	155, 632
Fsp4HI	GCNGC	2 cut(s)	156, 480
FspBI	CTAG	3 cut(s)	18, 539, 704
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	156, 480
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	290, 428
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	4 cut(s)	164, 170, 257, 439
Hpy166II	GTNNAC	2 cut(s)	438, 508
Hpy188I	TCNGA	3 cut(s)	169, 236, 252
Hpy188III	TCNNGA	3 cut(s)	174, 513, 559
Hpy8I	GTNNAC	2 cut(s)	438, 508
HpyAV	CCTTC	5 cut(s)	18, 40, 313, 357, 610
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	7 cut(s)	284, 329, 446, 479, 526, 677, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 488
HpyF3I	CTNAG	2 cut(s)	168, 607
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	290, 428
HspAI	GCGC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	120, 236, 631
LmnI	GCTCC	1 cut(s)	470
LpnPI	CCDG	7 cut(s)	389, 468, 489, 501, 612, 634, 740
Lsp1109I	GCAGC	2 cut(s)	142, 491
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	3 cut(s)	18, 539, 704
MaeII	ACGT	1 cut(s)	434
MalI	GATC	3 cut(s)	122, 238, 633
MboI	GATC	3 cut(s)	120, 236, 631
MboII	GAAGA	5 cut(s)	6, 277, 280, 635, 665
MhlI	GDGCHC	2 cut(s)	475, 713
MlyI	GAGTC	3 cut(s)	179, 266, 433
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	3 cut(s)	496, 535, 622
MseI	TTAA	3 cut(s)	197, 216, 612
MspA1I	CMGCKG	2 cut(s)	482, 491
Mva1269I	GAATGC	1 cut(s)	733
MwoI	GCNNNNNNNGC	2 cut(s)	479, 488
NcoI	CCATGG	1 cut(s)	424
NdeI	CATATG	1 cut(s)	636
NdeII	GATC	3 cut(s)	120, 236, 631
NlaIII	CATG	2 cut(s)	290, 428
NlaIV	GGNNCC	1 cut(s)	710
NspI	RCATGY	1 cut(s)	290
PaqCI	CACCTGC	1 cut(s)	484
PctI	GAATGC	1 cut(s)	733
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	157, 481
PleI	GAGTC	3 cut(s)	178, 265, 433
PpsI	GAGTC	3 cut(s)	178, 265, 433
Ppu21I	YACGTR	1 cut(s)	435
PpuMI	RGGWCCY	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	710
PspPI	GGNCC	2 cut(s)	27, 485
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	481
PvuII	CAGCTG	2 cut(s)	482, 491
RsaI	GTAC	3 cut(s)	495, 641, 686
RsaNI	GTAC	3 cut(s)	494, 640, 685
SaqAI	TTAA	3 cut(s)	197, 216, 612
SatI	GCNGC	2 cut(s)	156, 480
Sau3AI	GATC	3 cut(s)	120, 236, 631
Sau96I	GGNCC	2 cut(s)	27, 485
SchI	GAGTC	3 cut(s)	179, 266, 433
SduI	GDGCHC	2 cut(s)	475, 713
SfaNI	GCATC	1 cut(s)	664
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	2 cut(s)	27, 485
SmlI	CTYRAG	3 cut(s)	181, 511, 557
SmoI	CTYRAG	3 cut(s)	181, 511, 557
SsiI	CCGC	2 cut(s)	54, 290
SspI	AATATT	1 cut(s)	583
SspMI	CTAG	3 cut(s)	18, 539, 704
StyI	CCWWGG	1 cut(s)	424
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	1 cut(s)	191
TatI	WGTACW	1 cut(s)	639
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	3 cut(s)	197, 216, 612
Tru9I	TTAA	3 cut(s)	197, 216, 612
TscAI	CASTG	1 cut(s)	377
TseI	GCWGC	2 cut(s)	155, 479
TspDTI	ATGAA	6 cut(s)	22, 159, 278, 375, 636, 740
TspRI	CASTG	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	27, 485
XapI	RAATTY	3 cut(s)	336, 644, 690
XceI	RCATGY	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	3 cut(s)	18, 539, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.