Protein kinase domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 969 |
| Acc36I | ACCTGC | 1 cut(s) | 706 |
| AccI | GTMKAC | 1 cut(s) | 585 |
| AccII | CGCG | 2 cut(s) | 767, 1822 |
| AciI | CCGC | 9 cut(s) | 151, 765, 908, 951, 1068, 1219, 1620, 1820, 1822 |
| AclI | AACGTT | 1 cut(s) | 867 |
| AclWI | GGATC | 6 cut(s) | 535, 641, 1178, 1305, 1610, 1623 |
| AcoI | YGGCCR | 2 cut(s) | 1362, 1823 |
| AcsI | RAATTY | 5 cut(s) | 691, 854, 1368, 1722, 1770 |
| AcuI | CTGAAG | 2 cut(s) | 189, 672 |
| AfaI | GTAC | 6 cut(s) | 221, 285, 611, 1148, 1271, 1431 |
| AfeI | AGCGCT | 1 cut(s) | 484 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 129, 446, 503, 1538, 1821 |
| AflIII | ACRYGT | 2 cut(s) | 286, 1081 |
| AgeI | ACCGGT | 1 cut(s) | 329 |
| AgsI | TTSAA | 9 cut(s) | 143, 257, 277, 932, 1026, 1048, 1226, 1688, 1731 |
| AjnI | CCWGG | 2 cut(s) | 473, 821 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 924, 956 |
| Alw21I | GWGCWC | 2 cut(s) | 337, 1173 |
| Alw26I | GTCTC | 2 cut(s) | 724, 781 |
| AlwI | GGATC | 6 cut(s) | 535, 641, 1178, 1305, 1610, 1623 |
| Aor51HI | AGCGCT | 1 cut(s) | 484 |
| AoxI | GGCC | 7 cut(s) | 76, 294, 958, 1337, 1362, 1706, 1823 |
| ApeKI | GCWGC | 5 cut(s) | 155, 209, 341, 752, 755 |
| ApoI | RAATTY | 5 cut(s) | 691, 854, 1368, 1722, 1770 |
| AsiGI | ACCGGT | 1 cut(s) | 329 |
| AspA2I | CCTAGG | 1 cut(s) | 73 |
| AspLEI | GCGC | 2 cut(s) | 485, 494 |
| AspS9I | GGNCC | 4 cut(s) | 311, 318, 506, 959 |
| AsuC2I | CCSGG | 2 cut(s) | 251, 266 |
| AsuHPI | GGTGA | 2 cut(s) | 319, 1057 |
| AsuNHI | GCTAGC | 1 cut(s) | 1307 |
| AvaII | GGWCC | 3 cut(s) | 311, 318, 506 |
| AvrII | CCTAGG | 1 cut(s) | 73 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 367, 400 |
| BalI | TGGCCA | 1 cut(s) | 1364 |
| BamHI | GGATCC | 1 cut(s) | 1615 |
| BanII | GRGCYC | 1 cut(s) | 1173 |
| BbsI | GAAGAC | 2 cut(s) | 1557, 1803 |
| Bbv12I | GWGCWC | 2 cut(s) | 337, 1173 |
| BbvI | GCAGC | 5 cut(s) | 167, 196, 353, 742, 764 |
| BccI | CCATC | 6 cut(s) | 518, 911, 980, 1299, 1597, 1847 |
| BceAI | ACGGC | 1 cut(s) | 197 |
| BciT130I | CCWGG | 2 cut(s) | 475, 823 |
| BciVI | GTATCC | 1 cut(s) | 695 |
| BcnI | CCSGG | 2 cut(s) | 251, 266 |
| BcoDI | GTCTC | 2 cut(s) | 724, 781 |
| BfaI | CTAG | 4 cut(s) | 74, 80, 1308, 1565 |
| BfmI | CTRYAG | 3 cut(s) | 538, 756, 1502 |
| BfoI | RGCGCY | 1 cut(s) | 486 |
| BfuAI | ACCTGC | 1 cut(s) | 706 |
| BfuI | GTATCC | 1 cut(s) | 695 |
| BglII | AGATCT | 1 cut(s) | 1344 |
| BisI | GCNGC | 7 cut(s) | 156, 210, 342, 753, 756, 909, 1823 |
| BlnI | CCTAGG | 1 cut(s) | 73 |
| BlpI | GCTNAGC | 1 cut(s) | 464 |
| BlsI | GCNGC | 7 cut(s) | 157, 211, 343, 754, 757, 910, 1824 |
| BmcAI | AGTACT | 2 cut(s) | 611, 1271 |
| Bme1390I | CCNGG | 4 cut(s) | 251, 266, 475, 823 |
| Bme18I | GGWCC | 3 cut(s) | 311, 318, 506 |
| BmgT120I | GGNCC | 4 cut(s) | 311, 318, 506, 959 |
| BmiI | GGNNCC | 3 cut(s) | 763, 961, 1617 |
| BmrFI | CCNGG | 4 cut(s) | 251, 266, 475, 823 |
| BmrI | ACTGGG | 1 cut(s) | 289 |
| BmsI | GCATC | 5 cut(s) | 637, 1122, 1315, 1649, 1837 |
| BmtI | GCTAGC | 1 cut(s) | 1311 |
| BmuI | ACTGGG | 1 cut(s) | 289 |
| BpiI | GAAGAC | 2 cut(s) | 1557, 1803 |
| BpmI | CTGGAG | 1 cut(s) | 1419 |
| Bpu10I | CCTNAGC | 2 cut(s) | 681, 807 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 464 |
| BpuEI | CTTGAG | 2 cut(s) | 1014, 1258 |
| BpuMI | CCSGG | 2 cut(s) | 251, 266 |
| Bsa29I | ATCGAT | 2 cut(s) | 530, 621 |
| BsaAI | YACGTR | 1 cut(s) | 1084 |
| BsaI | GGTCTC | 1 cut(s) | 724 |
| BsaJI | CCNNGG | 7 cut(s) | 73, 314, 473, 474, 519, 822, 1820 |
| BsaWI | WCCGGW | 1 cut(s) | 329 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 129, 446, 503, 1538, 1821 |
| Bse118I | RCCGGY | 2 cut(s) | 329, 496 |
| Bse1I | ACTGG | 3 cut(s) | 284, 371, 429 |
| Bse3DI | GCAATG | 1 cut(s) | 891 |
| BseBI | CCWGG | 2 cut(s) | 475, 823 |
| BseCI | ATCGAT | 2 cut(s) | 530, 621 |
| BseDI | CCNNGG | 7 cut(s) | 73, 314, 473, 474, 519, 822, 1820 |
| BseGI | GGATG | 5 cut(s) | 529, 922, 1287, 1387, 1608 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 129, 446, 503, 1538, 1821 |
| BseMI | GCAATG | 1 cut(s) | 891 |
| BseMII | CTCAG | 2 cut(s) | 1259, 1872 |
| BseNI | ACTGG | 3 cut(s) | 284, 371, 429 |
| BseRI | GAGGAG | 1 cut(s) | 1055 |
| BseXI | GCAGC | 5 cut(s) | 167, 196, 353, 742, 764 |
| BsgI | GTGCAG | 2 cut(s) | 236, 776 |
| Bsh1236I | CGCG | 2 cut(s) | 767, 1822 |
| BshFI | GGCC | 7 cut(s) | 78, 296, 960, 1339, 1364, 1708, 1825 |
| BshTI | ACCGGT | 1 cut(s) | 329 |
| BshVI | ATCGAT | 2 cut(s) | 530, 621 |
| BsiHKAI | GWGCWC | 2 cut(s) | 337, 1173 |
| BsiSI | CCGG | 4 cut(s) | 251, 265, 330, 497 |
| BslFI | GGGAC | 3 cut(s) | 281, 491, 1263 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 129, 446, 503, 1538, 1821 |
| BsmAI | GTCTC | 2 cut(s) | 724, 781 |
| BsmFI | GGGAC | 3 cut(s) | 281, 491, 1263 |
| BsmI | GAATGC | 1 cut(s) | 1531 |
| BsnI | GGCC | 7 cut(s) | 78, 296, 960, 1339, 1364, 1708, 1825 |
| Bso31I | GGTCTC | 1 cut(s) | 724 |
| Bsp1286I | GDGCHC | 2 cut(s) | 337, 1173 |
| Bsp143I | GATC | 8 cut(s) | 527, 618, 633, 1183, 1297, 1344, 1506, 1615 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 464 |
| BspACI | CCGC | 9 cut(s) | 151, 765, 908, 951, 1068, 1219, 1620, 1820, 1822 |
| BspANI | GGCC | 7 cut(s) | 78, 296, 960, 1339, 1364, 1708, 1825 |
| BspCNI | CTCAG | 2 cut(s) | 1258, 1871 |
| BspDI | ATCGAT | 2 cut(s) | 530, 621 |
| BspFNI | CGCG | 2 cut(s) | 767, 1822 |
| BspLI | GGNNCC | 3 cut(s) | 763, 961, 1617 |
| BspMAI | CTGCAG | 1 cut(s) | 760 |
| BspMI | ACCTGC | 1 cut(s) | 706 |
| BspOI | GCTAGC | 1 cut(s) | 1311 |
| BspPI | GGATC | 6 cut(s) | 535, 641, 1178, 1305, 1610, 1623 |
| BspQI | GCTCTTC | 1 cut(s) | 19 |
| BspTNI | GGTCTC | 1 cut(s) | 724 |
| BsrDI | GCAATG | 1 cut(s) | 891 |
| BsrFI | RCCGGY | 2 cut(s) | 329, 496 |
| BsrI | ACTGG | 3 cut(s) | 284, 371, 429 |
| BssAI | RCCGGY | 2 cut(s) | 329, 496 |
| BssECI | CCNNGG | 7 cut(s) | 73, 314, 473, 474, 519, 822, 1820 |
| BssMI | GATC | 8 cut(s) | 527, 618, 633, 1183, 1297, 1344, 1506, 1615 |
| BssT1I | CCWWGG | 2 cut(s) | 73, 519 |
| Bst2UI | CCWGG | 2 cut(s) | 475, 823 |
| Bst4CI | ACNGT | 2 cut(s) | 315, 614 |
| Bst6I | CTCTTC | 2 cut(s) | 19, 138 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 694 |
| BstBAI | YACGTR | 1 cut(s) | 1084 |
| BstC8I | GCNNGC | 4 cut(s) | 153, 760, 1309, 1664 |
| BstDEI | CTNAG | 6 cut(s) | 464, 681, 807, 1245, 1341, 1858 |
| BstDSI | CCRYGG | 2 cut(s) | 314, 1820 |
| BstF5I | GGATG | 5 cut(s) | 529, 922, 1287, 1387, 1608 |
| BstFNI | CGCG | 2 cut(s) | 767, 1822 |
| BstH2I | RGCGCY | 1 cut(s) | 486 |
| BstHHI | GCGC | 2 cut(s) | 485, 494 |
| BstKTI | GATC | 8 cut(s) | 530, 621, 636, 1186, 1300, 1347, 1509, 1618 |
| BstMAI | GTCTC | 2 cut(s) | 724, 781 |
| BstMBI | GATC | 8 cut(s) | 527, 618, 633, 1183, 1297, 1344, 1506, 1615 |
| BstNI | CCWGG | 2 cut(s) | 475, 823 |
| BstNSI | RCATGY | 2 cut(s) | 290, 1153 |
| BstSCI | CCNGG | 4 cut(s) | 249, 264, 473, 821 |
| BstSFI | CTRYAG | 3 cut(s) | 538, 756, 1502 |
| BstUI | CGCG | 2 cut(s) | 767, 1822 |
| BstV1I | GCAGC | 5 cut(s) | 167, 196, 353, 742, 764 |
| BstV2I | GAAGAC | 2 cut(s) | 1557, 1803 |
| BstX2I | RGATCY | 3 cut(s) | 1297, 1344, 1615 |
| BstYI | RGATCY | 3 cut(s) | 1297, 1344, 1615 |
| Bsu15I | ATCGAT | 2 cut(s) | 530, 621 |
| BsuI | GTATCC | 1 cut(s) | 695 |
| BsuRI | GGCC | 7 cut(s) | 78, 296, 960, 1339, 1364, 1708, 1825 |
| BsuTUI | ATCGAT | 2 cut(s) | 530, 621 |
| BtgI | CCRYGG | 2 cut(s) | 314, 1820 |
| BtsCI | GGATG | 5 cut(s) | 529, 922, 1287, 1387, 1608 |
| BtsIMutI | CAGTG | 2 cut(s) | 194, 558 |
| BveI | ACCTGC | 1 cut(s) | 706 |
| Cac8I | GCNNGC | 4 cut(s) | 153, 760, 1309, 1664 |
| CfoI | GCGC | 2 cut(s) | 485, 494 |
| Cfr10I | RCCGGY | 2 cut(s) | 329, 496 |
| Cfr13I | GGNCC | 4 cut(s) | 311, 318, 506, 959 |
| Cfr42I | CCGCGG | 1 cut(s) | 1823 |
| ClaI | ATCGAT | 2 cut(s) | 530, 621 |
| CpoI | CGGWCCG | 1 cut(s) | 311 |
| CseI | GACGC | 1 cut(s) | 469 |
| Csp6I | GTAC | 6 cut(s) | 220, 284, 610, 1147, 1270, 1430 |
| CspAI | ACCGGT | 1 cut(s) | 329 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 183, 218 |
| CspI | CGGWCCG | 1 cut(s) | 311 |
| CviAII | CATG | 9 cut(s) | 118, 287, 292, 338, 393, 725, 1060, 1124, 1150 |
| CviQI | GTAC | 6 cut(s) | 220, 284, 610, 1147, 1270, 1430 |
| DdeI | CTNAG | 6 cut(s) | 464, 681, 807, 1245, 1341, 1858 |
| DpnI | GATC | 8 cut(s) | 529, 620, 635, 1185, 1299, 1346, 1508, 1617 |
| DpnII | GATC | 8 cut(s) | 527, 618, 633, 1183, 1297, 1344, 1506, 1615 |
| EaeI | YGGCCR | 2 cut(s) | 1362, 1823 |
| Eam1104I | CTCTTC | 2 cut(s) | 19, 138 |
| EarI | CTCTTC | 2 cut(s) | 19, 138 |
| Ecl136II | GAGCTC | 1 cut(s) | 1171 |
| Eco130I | CCWWGG | 2 cut(s) | 73, 519 |
| Eco147I | AGGCCT | 3 cut(s) | 78, 1339, 1708 |
| Eco24I | GRGCYC | 1 cut(s) | 1173 |
| Eco31I | GGTCTC | 1 cut(s) | 724 |
| Eco32I | GATATC | 1 cut(s) | 547 |
| Eco47I | GGWCC | 3 cut(s) | 311, 318, 506 |
| Eco47III | AGCGCT | 1 cut(s) | 484 |
| Eco53kI | GAGCTC | 1 cut(s) | 1171 |
| Eco57I | CTGAAG | 2 cut(s) | 189, 672 |
| EcoICRI | GAGCTC | 1 cut(s) | 1171 |
| EcoO109I | RGGNCCY | 1 cut(s) | 506 |
| EcoRII | CCWGG | 2 cut(s) | 473, 821 |
| EcoRV | GATATC | 1 cut(s) | 547 |
| EcoT14I | CCWWGG | 2 cut(s) | 73, 519 |
| EcoT22I | ATGCAT | 1 cut(s) | 1576 |
| EcoT38I | GRGCYC | 1 cut(s) | 1173 |
| ErhI | CCWWGG | 2 cut(s) | 73, 519 |
| FaeI | CATG | 9 cut(s) | 121, 290, 295, 341, 396, 728, 1063, 1127, 1153 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1148, 1180 |
| FaqI | GGGAC | 3 cut(s) | 281, 491, 1263 |
| FatI | CATG | 9 cut(s) | 117, 286, 291, 337, 392, 724, 1059, 1123, 1149 |
| FauI | CCCGC | 3 cut(s) | 144, 1212, 1627 |
| FauNDI | CATATG | 1 cut(s) | 1420 |
| FblI | GTMKAC | 1 cut(s) | 585 |
| Fnu4HI | GCNGC | 7 cut(s) | 156, 210, 342, 753, 756, 909, 1823 |
| FokI | GGATG | 5 cut(s) | 536, 929, 1274, 1394, 1615 |
| FriOI | GRGCYC | 1 cut(s) | 1173 |
| Fsp4HI | GCNGC | 7 cut(s) | 156, 210, 342, 753, 756, 909, 1823 |
| FspBI | CTAG | 4 cut(s) | 74, 80, 1308, 1565 |
| GlaI | GCGC | 2 cut(s) | 484, 493 |
| GluI | GCNGC | 7 cut(s) | 156, 210, 342, 753, 756, 909, 1823 |
| GsuI | CTGGAG | 1 cut(s) | 1419 |
| HaeII | RGCGCY | 1 cut(s) | 486 |
| HaeIII | GGCC | 7 cut(s) | 78, 296, 960, 1339, 1364, 1708, 1825 |
| HapII | CCGG | 4 cut(s) | 251, 265, 330, 497 |
| HgaI | GACGC | 1 cut(s) | 469 |
| HhaI | GCGC | 2 cut(s) | 485, 494 |
| Hin1II | CATG | 9 cut(s) | 121, 290, 295, 341, 396, 728, 1063, 1127, 1153 |
| Hin6I | GCGC | 2 cut(s) | 483, 492 |
| HinP1I | GCGC | 2 cut(s) | 483, 492 |
| HindIII | AAGCTT | 4 cut(s) | 938, 1020, 1162, 1830 |
| HinfI | GANTC | 4 cut(s) | 38, 236, 257, 623 |
| HpaII | CCGG | 4 cut(s) | 251, 265, 330, 497 |
| HphI | GGTGA | 2 cut(s) | 319, 1057 |
| Hpy166II | GTNNAC | 3 cut(s) | 318, 586, 1480 |
| Hpy188I | TCNGA | 9 cut(s) | 115, 169, 879, 1302, 1351, 1474, 1490, 1546, 1861 |
| Hpy188III | TCNNGA | 5 cut(s) | 1048, 1275, 1295, 1436, 1688 |
| Hpy8I | GTNNAC | 3 cut(s) | 318, 586, 1480 |
| HpyAV | CCTTC | 4 cut(s) | 250, 1229, 1719, 1739 |
| HpyCH4III | ACNGT | 2 cut(s) | 315, 614 |
| HpyCH4IV | ACGT | 5 cut(s) | 708, 867, 900, 1083, 1443 |
| HpyF3I | CTNAG | 6 cut(s) | 464, 681, 807, 1245, 1341, 1858 |
| HpySE526I | ACGT | 5 cut(s) | 708, 867, 900, 1083, 1443 |
| Hsp92II | CATG | 9 cut(s) | 121, 290, 295, 341, 396, 728, 1063, 1127, 1153 |
| HspAI | GCGC | 2 cut(s) | 483, 492 |
| KspI | CCGCGG | 1 cut(s) | 1823 |
| Kzo9I | GATC | 8 cut(s) | 527, 618, 633, 1183, 1297, 1344, 1506, 1615 |
| LguI | GCTCTTC | 1 cut(s) | 19 |
| LmnI | GCTCC | 4 cut(s) | 685, 767, 1168, 1748 |
| Lsp1109I | GCAGC | 5 cut(s) | 167, 196, 353, 742, 764 |
| LweI | GCATC | 5 cut(s) | 637, 1122, 1315, 1649, 1837 |
| MaeI | CTAG | 4 cut(s) | 74, 80, 1308, 1565 |
| MaeII | ACGT | 5 cut(s) | 708, 867, 900, 1083, 1443 |
| MaeIII | GTNAC | 3 cut(s) | 362, 773, 1240 |
| MalI | GATC | 8 cut(s) | 529, 620, 635, 1185, 1299, 1346, 1508, 1617 |
| MboI | GATC | 8 cut(s) | 527, 618, 633, 1183, 1297, 1344, 1506, 1615 |
| MflI | RGATCY | 3 cut(s) | 1297, 1344, 1615 |
| MhlI | GDGCHC | 2 cut(s) | 337, 1173 |
| MlsI | TGGCCA | 1 cut(s) | 1364 |
| MluNI | TGGCCA | 1 cut(s) | 1364 |
| MlyI | GAGTC | 1 cut(s) | 245 |
| MmeI | TCCRAC | 2 cut(s) | 1393, 1698 |
| MnlI | CCTC | 8 cut(s) | 898, 940, 1033, 1048, 1187, 1271, 1329, 1443 |
| Mox20I | TGGCCA | 1 cut(s) | 1364 |
| Mph1103I | ATGCAT | 1 cut(s) | 1576 |
| MscI | TGGCCA | 1 cut(s) | 1364 |
| MseI | TTAA | 2 cut(s) | 1446, 1556 |
| Msp20I | TGGCCA | 1 cut(s) | 1364 |
| MspA1I | CMGCKG | 3 cut(s) | 755, 848, 1822 |
| MspI | CCGG | 4 cut(s) | 251, 265, 330, 497 |
| MspR9I | CCNGG | 4 cut(s) | 251, 266, 475, 823 |
| Mva1269I | GAATGC | 1 cut(s) | 1531 |
| MvaI | CCWGG | 2 cut(s) | 475, 823 |
| MvnI | CGCG | 2 cut(s) | 767, 1822 |
| NciI | CCSGG | 2 cut(s) | 251, 266 |
| NdeI | CATATG | 1 cut(s) | 1420 |
| NdeII | GATC | 8 cut(s) | 527, 618, 633, 1183, 1297, 1344, 1506, 1615 |
| NheI | GCTAGC | 1 cut(s) | 1307 |
| NlaIII | CATG | 9 cut(s) | 121, 290, 295, 341, 396, 728, 1063, 1127, 1153 |
| NlaIV | GGNNCC | 3 cut(s) | 763, 961, 1617 |
| NmuCI | GTSAC | 1 cut(s) | 362 |
| NsiI | ATGCAT | 1 cut(s) | 1576 |
| NspI | RCATGY | 2 cut(s) | 290, 1153 |
| PasI | CCCWGGG | 1 cut(s) | 474 |
| PceI | AGGCCT | 3 cut(s) | 78, 1339, 1708 |
| PciI | ACATGT | 1 cut(s) | 286 |
| PciSI | GCTCTTC | 1 cut(s) | 19 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 864 |
| PctI | GAATGC | 1 cut(s) | 1531 |
| PfeI | GAWTC | 3 cut(s) | 38, 257, 623 |
| PflFI | GACNNNGTC | 1 cut(s) | 581 |
| PfoI | TCCNGGA | 1 cut(s) | 264 |
| PinAI | ACCGGT | 1 cut(s) | 329 |
| PkrI | GCNGC | 7 cut(s) | 157, 211, 343, 754, 757, 910, 1824 |
| PleI | GAGTC | 1 cut(s) | 244 |
| PpsI | GAGTC | 1 cut(s) | 244 |
| Ppu21I | YACGTR | 1 cut(s) | 1084 |
| PpuMI | RGGWCCY | 1 cut(s) | 506 |
| PscI | ACATGT | 1 cut(s) | 286 |
| PsiI | TTATAA | 1 cut(s) | 969 |
| Psp124BI | GAGCTC | 1 cut(s) | 1173 |
| Psp1406I | AACGTT | 1 cut(s) | 867 |
| Psp5II | RGGWCCY | 1 cut(s) | 506 |
| Psp6I | CCWGG | 2 cut(s) | 473, 821 |
| PspGI | CCWGG | 2 cut(s) | 473, 821 |
| PspN4I | GGNNCC | 3 cut(s) | 763, 961, 1617 |
| PspPI | GGNCC | 4 cut(s) | 311, 318, 506, 959 |
| PspPPI | RGGWCCY | 1 cut(s) | 506 |
| PstI | CTGCAG | 1 cut(s) | 760 |
| PsuI | RGATCY | 3 cut(s) | 1297, 1344, 1615 |
| PsyI | GACNNNGTC | 1 cut(s) | 581 |
| PvuII | CAGCTG | 2 cut(s) | 755, 848 |
| RsaI | GTAC | 6 cut(s) | 221, 285, 611, 1148, 1271, 1431 |
| RsaNI | GTAC | 6 cut(s) | 220, 284, 610, 1147, 1270, 1430 |
| Rsr2I | CGGWCCG | 1 cut(s) | 311 |
| RsrII | CGGWCCG | 1 cut(s) | 311 |
| SacI | GAGCTC | 1 cut(s) | 1173 |
| SacII | CCGCGG | 1 cut(s) | 1823 |
| SapI | GCTCTTC | 1 cut(s) | 19 |
| SaqAI | TTAA | 2 cut(s) | 1446, 1556 |
| SatI | GCNGC | 7 cut(s) | 156, 210, 342, 753, 756, 909, 1823 |
| Sau3AI | GATC | 8 cut(s) | 527, 618, 633, 1183, 1297, 1344, 1506, 1615 |
| Sau96I | GGNCC | 4 cut(s) | 311, 318, 506, 959 |
| ScaI | AGTACT | 2 cut(s) | 611, 1271 |
| SchI | GAGTC | 1 cut(s) | 245 |
| ScrFI | CCNGG | 4 cut(s) | 251, 266, 475, 823 |
| SduI | GDGCHC | 2 cut(s) | 337, 1173 |
| SfaNI | GCATC | 5 cut(s) | 637, 1122, 1315, 1649, 1837 |
| SfcI | CTRYAG | 3 cut(s) | 538, 756, 1502 |
| Sfr303I | CCGCGG | 1 cut(s) | 1823 |
| SgrAI | CRCCGGYG | 1 cut(s) | 329 |
| SgrBI | CCGCGG | 1 cut(s) | 1823 |
| SinI | GGWCC | 3 cut(s) | 311, 318, 506 |
| SmlI | CTYRAG | 2 cut(s) | 1029, 1273 |
| SmoI | CTYRAG | 2 cut(s) | 1029, 1273 |
| SseBI | AGGCCT | 3 cut(s) | 78, 1339, 1708 |
| SsiI | CCGC | 9 cut(s) | 151, 765, 908, 951, 1068, 1219, 1620, 1820, 1822 |
| SspI | AATATT | 1 cut(s) | 885 |
| SspMI | CTAG | 4 cut(s) | 74, 80, 1308, 1565 |
| SstI | GAGCTC | 1 cut(s) | 1173 |
| StuI | AGGCCT | 3 cut(s) | 78, 1339, 1708 |
| StyD4I | CCNGG | 4 cut(s) | 249, 264, 473, 821 |
| StyI | CCWWGG | 2 cut(s) | 73, 519 |
| TaaI | ACNGT | 2 cut(s) | 315, 614 |
| TaiI | ACGT | 5 cut(s) | 711, 870, 903, 1086, 1446 |
| TatI | WGTACW | 4 cut(s) | 219, 609, 1146, 1269 |
| TauI | GCSGC | 2 cut(s) | 911, 1825 |
| TfiI | GAWTC | 3 cut(s) | 38, 257, 623 |
| Tru1I | TTAA | 2 cut(s) | 1446, 1556 |
| Tru9I | TTAA | 2 cut(s) | 1446, 1556 |
| TscAI | CASTG | 2 cut(s) | 201, 565 |
| TseFI | GTSAC | 1 cut(s) | 362 |
| TseI | GCWGC | 5 cut(s) | 155, 209, 341, 752, 755 |
| Tsp45I | GTSAC | 1 cut(s) | 362 |
| TspDTI | ATGAA | 5 cut(s) | 22, 1215, 1398, 1563, 1758 |
| TspGWI | ACGGA | 4 cut(s) | 324, 389, 770, 929 |
| TspRI | CASTG | 2 cut(s) | 201, 565 |
| Tth111I | GACNNNGTC | 1 cut(s) | 581 |
| VpaK11BI | GGWCC | 3 cut(s) | 311, 318, 506 |
| XapI | RAATTY | 5 cut(s) | 691, 854, 1368, 1722, 1770 |
| XceI | RCATGY | 2 cut(s) | 290, 1153 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 427 |
| XmaJI | CCTAGG | 1 cut(s) | 73 |
| XmiI | GTMKAC | 1 cut(s) | 585 |
| XspI | CTAG | 4 cut(s) | 74, 80, 1308, 1565 |
| ZrmI | AGTACT | 2 cut(s) | 611, 1271 |
| Zsp2I | ATGCAT | 1 cut(s) | 1576 |