Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004948.1

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

12172 .. 13315

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004948.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgctggtatatgagtacatgccaaacaagagcttggatcactacctctttgatccaagtagttgtaatcttttggattgggagcaacgtgtccacatcattgaaggggtaattcaagggcttctatatctccaagaatactcaaactctacaataattcaccgtgatctgaaagcaagcaacattctgttagatgatgagatgaagccaaaaatatcagattttggtctagccagagctttcagaaagaatgaacatgaggcaaacactggtcgcattgtaggaacatatggctatgttcctcctgaatatgtaagaagaggcatttattccatgaaatacgatgtttacagctttggtgttctgcttctgcatatcataagcggcaagagaagttcatgtctttatggcttagatgaaaatttaaacattctagaacacgcatatgaattgtggaaagaaggccaaggcatggatttcatacatccaacccttgatgattcgacttcggcttgcaagctcttaagatgcatggcggtagccttattatgtgtccaagaaaatctagtagatagaccatccatgttggaggtttcttcgatactcaagagcgaaagtgcagccatcattagtcctaaaaagcctgctttctcagttacgaaggatgaagatgaggatcatatgtataaagatatctattcagtcaatgatgcaacaatgttcgaaattgtgccccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

246

Amino Acids

28.18

Weight (kDa)

5.18

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	472
AciI	CCGC	2 cut(s)	384, 536
AclWI	GGATC	3 cut(s)	45, 47, 684
AcsI	RAATTY	1 cut(s)	421
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	472
AflII	CTTAAG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	104, 116
AluBI	AGCT	4 cut(s)	33, 239, 354, 520
AluI	AGCT	4 cut(s)	33, 239, 354, 520
AlwI	GGATC	3 cut(s)	45, 47, 684
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	152
AsuII	TTCGAA	1 cut(s)	723
BaeGI	GKGCMC	1 cut(s)	735
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	2 cut(s)	586, 632
BfaI	CTAG	3 cut(s)	230, 434, 566
BfrI	CTTAAG	1 cut(s)	523
BisI	GCNGC	2 cut(s)	385, 621
BlsI	GCNGC	2 cut(s)	386, 622
BmsI	GCATC	2 cut(s)	518, 700
Bpu14I	TTCGAA	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	590
BsaBI	GATNNNNATC	1 cut(s)	675
BsaJI	CCNNGG	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	3 cut(s)	484, 578, 670
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	735
BseXI	GCAGC	1 cut(s)	632
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	472
BsnI	GGCC	1 cut(s)	465
Bsp119I	TTCGAA	1 cut(s)	723
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	4 cut(s)	37, 52, 166, 676
BspACI	CCGC	2 cut(s)	384, 536
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	1 cut(s)	665
BspPI	GGATC	3 cut(s)	45, 47, 684
BspT104I	TTCGAA	1 cut(s)	723
BspTI	CTTAAG	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	4 cut(s)	37, 52, 166, 676
BssT1I	CCWWGG	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	313
BstAFI	CTTAAG	1 cut(s)	523
BstBI	TTCGAA	1 cut(s)	723
BstC8I	GCNNGC	4 cut(s)	178, 514, 518, 645
BstDEI	CTNAG	2 cut(s)	412, 652
BstF5I	GGATG	3 cut(s)	484, 578, 670
BstKTI	GATC	4 cut(s)	40, 55, 169, 679
BstMBI	GATC	4 cut(s)	37, 52, 166, 676
BstNSI	RCATGY	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	735
BstV1I	GCAGC	1 cut(s)	632
BsuRI	GGCC	1 cut(s)	465
BtsCI	GGATG	3 cut(s)	484, 578, 670
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	4 cut(s)	178, 514, 518, 645
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	7 cut(s)	19, 257, 334, 399, 472, 532, 583
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	412, 652
DpnI	GATC	4 cut(s)	39, 54, 168, 678
DpnII	GATC	4 cut(s)	37, 52, 166, 676
DraI	TTTAAA	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	466
Eco32I	GATATC	1 cut(s)	694
EcoRV	GATATC	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	466
EcoT22I	ATGCAT	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	7 cut(s)	22, 260, 337, 402, 475, 535, 586
FatI	CATG	7 cut(s)	18, 256, 333, 398, 471, 531, 582
FauNDI	CATATG	3 cut(s)	289, 445, 681
Fnu4HI	GCNGC	2 cut(s)	385, 621
FokI	GGATG	3 cut(s)	471, 565, 677
Fsp4HI	GCNGC	2 cut(s)	385, 621
FspBI	CTAG	3 cut(s)	230, 434, 566
GluI	GCNGC	2 cut(s)	385, 621
HaeIII	GGCC	1 cut(s)	465
Hin1II	CATG	7 cut(s)	22, 260, 337, 402, 475, 535, 586
HinfI	GANTC	1 cut(s)	500
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	94, 349
Hpy188I	TCNGA	3 cut(s)	171, 220, 245
Hpy188III	TCNNGA	3 cut(s)	305, 434, 607
Hpy8I	GTNNAC	2 cut(s)	94, 349
HpyAV	CCTTC	3 cut(s)	98, 455, 655
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	5 cut(s)	373, 516, 531, 620, 713
HpyF3I	CTNAG	2 cut(s)	412, 652
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	7 cut(s)	22, 260, 337, 402, 475, 535, 586
Kzo9I	GATC	4 cut(s)	37, 52, 166, 676
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	247, 255, 318, 657
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	2 cut(s)	518, 700
MaeI	CTAG	3 cut(s)	230, 434, 566
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	4 cut(s)	39, 54, 168, 678
MboI	GATC	4 cut(s)	37, 52, 166, 676
MboII	GAAGA	3 cut(s)	330, 588, 680
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	5 cut(s)	111, 156, 421, 449, 726
MmeI	TCCRAC	2 cut(s)	512, 567
MnlI	CCTC	6 cut(s)	56, 253, 312, 314, 583, 667
Mph1103I	ATGCAT	1 cut(s)	533
MseI	TTAA	2 cut(s)	425, 524
MslI	CAYNNNNRTG	1 cut(s)	444
MspCI	CTTAAG	1 cut(s)	523
NdeI	CATATG	3 cut(s)	289, 445, 681
NdeII	GATC	4 cut(s)	37, 52, 166, 676
NlaIII	CATG	7 cut(s)	22, 260, 337, 402, 475, 535, 586
NsiI	ATGCAT	1 cut(s)	533
NspI	RCATGY	1 cut(s)	22
NspV	TTCGAA	1 cut(s)	723
PfeI	GAWTC	1 cut(s)	500
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	2 cut(s)	386, 622
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	425, 524
SatI	GCNGC	2 cut(s)	385, 621
Sau3AI	GATC	4 cut(s)	37, 52, 166, 676
SduI	GDGCHC	1 cut(s)	735
SetI	ASST	7 cut(s)	35, 48, 91, 241, 356, 522, 594
SfaNI	GCATC	2 cut(s)	518, 700
SfuI	TTCGAA	1 cut(s)	723
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	2 cut(s)	523, 605
SmoI	CTYRAG	2 cut(s)	523, 605
Sse9I	AATT	5 cut(s)	111, 156, 421, 449, 726
SsiI	CCGC	2 cut(s)	384, 536
SspMI	CTAG	3 cut(s)	230, 434, 566
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	503, 599, 723
TasI	AATT	5 cut(s)	111, 156, 421, 449, 726
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	425, 524
Tru9I	TTAA	2 cut(s)	425, 524
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	1 cut(s)	620
TspDTI	ATGAA	8 cut(s)	218, 267, 350, 387, 432, 462, 469, 681
TspRI	CASTG	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	472
Vha464I	CTTAAG	1 cut(s)	523
XapI	RAATTY	1 cut(s)	421
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	1 cut(s)	22
XspI	CTAG	3 cut(s)	230, 434, 566
Zsp2I	ATGCAT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.