Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

690273 .. 692012

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01363.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTGTTACATGCAAAGGAGAGTACTTAAGTCAATTGGGATTGTAGGCAACATCAAAAGATCAGTTTATAGGCTATTAAATATAGTTCCAAGTACAGACAGTTTTGACAGCAATGCTCCTAATCTGCAAGTTTTTAGTTATGCAACCATCAAAGCAGCTACAAATAACTTTTCGAGTAAGAATAAGCTTGGAGAGGGTGGCTTTGGACCTGTATACAAGGGTACGTTAAGGAAGGGCCAGCAAATAGCAGTGAAAAGACTATCGAAAACTTCAAACCAAGGCCTTGAAGAGTTTCAAAATGAGGTCACACTTACTGCAACACTGCACCATGTGAATCTAGTTAGAGTTCTGGGATATTGCACCAAGAGGGAAGAAAAGATGCTGATATATGAGTACATGCCAAACAAAAGCTTGGATCTCTACCTCTTTGATCCAAGTAGATGCGATCTTTTGCATTGGGAGCAACGTGTCCACATCATTGAAGGGGTAATTCAAGGGCTTCTATATCTCCAAGAATACTCAAACTCTACAATAATTCACCGTGATCTGAAAGCTAGCAACATTTTGTTGGATGATAAGATGAACCCTAAAATATCAGATTTTGGTCTAGCCAGAGCTTTCAGAAAGAATGAACTTGAGGCAAACACTGGTCGCATTGTAGGAACATATGGCTGTGTTCCCCCTGAATATGTAAGAAGAGGCATTTATTCCATGAAATTCGATGTTTACAGCTTCGGTGTTCTGCTTCTGCAAATCATAAGTGGCAAGAGAAGTTCATGCTTTTATGGCATAGATGGAAATCTAAACCTTCTAGAATACGCATATGAGTTGTGGAAAGAAGGCCAAGGCATGGATTTTGTAGATCCTACTCTAGATGATTCGACATCGTCTTGCAAGCTCTTAAGATGCATGGAGGTAGCCTTGTTATGTGTCCAAGAAAATCCAGTAGATAGACCATCCATGCTGGAGGTTTCTTCGATGCTCAAGAACGAAAGTGCTGCCATCATTAGTCCTAAAAAGCCTGCTTTCTCAGTTAAGGATGAAGATGAGGATCATATACACACATTCAGGGAAGAAATCTATTCTGTCAATGATGCAACAATGTCTGAAATTGTGGCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

375

Amino Acids

42.44

Weight (kDa)

7.04

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	58 - 324	8.7e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	59 - 327	9.6e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	850
AccI	GTMKAC	1 cut(s)	213
AclWI	GGATC	4 cut(s)	423, 425, 857, 1059
AcsI	RAATTY	1 cut(s)	716
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	4 cut(s)	24, 94, 223, 395
AfiI	CCNNNNNNNGG	1 cut(s)	850
AflII	CTTAAG	2 cut(s)	26, 901
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	5 cut(s)	273, 287, 296, 482, 494
AluBI	AGCT	7 cut(s)	158, 187, 411, 554, 617, 732, 898
AluI	AGCT	7 cut(s)	158, 187, 411, 554, 617, 732, 898
AlwI	GGATC	4 cut(s)	423, 425, 857, 1059
AoxI	GGCC	4 cut(s)	235, 280, 841, 1116
ApeKI	GCWGC	2 cut(s)	155, 998
ApoI	RAATTY	1 cut(s)	716
Asp700I	GAANNNNTTC	1 cut(s)	291
AspS9I	GGNCC	3 cut(s)	206, 235, 1117
AsuHPI	GGTGA	1 cut(s)	530
AsuNHI	GCTAGC	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	167, 985
BccI	CCATC	4 cut(s)	155, 788, 964, 1010
BcgI	CGANNNNNNTGC	2 cut(s)	980, 1014
BfaI	CTAG	5 cut(s)	338, 555, 608, 812, 872
BfrI	CTTAAG	2 cut(s)	26, 901
BisI	GCNGC	2 cut(s)	156, 999
BlsI	GCNGC	2 cut(s)	157, 1000
BmcAI	AGTACT	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	3 cut(s)	206, 235, 1117
BmsI	GCATC	5 cut(s)	369, 431, 896, 969, 1084
BmtI	GCTAGC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	986
BpuEI	CTTGAG	2 cut(s)	656, 968
BsaBI	GATNNNNATC	2 cut(s)	798, 1050
BsaJI	CCNNGG	2 cut(s)	277, 844
Bsc4I	CCNNNNNNNGG	1 cut(s)	850
Bse1I	ACTGG	2 cut(s)	652, 944
Bse3DI	GCAATG	1 cut(s)	118
Bse8I	GATNNNNATC	2 cut(s)	798, 1050
BseDI	CCNNGG	2 cut(s)	277, 844
BseGI	GGATG	3 cut(s)	577, 956, 1045
BseJI	GATNNNNATC	2 cut(s)	798, 1050
BseLI	CCNNNNNNNGG	1 cut(s)	850
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	1044
BseNI	ACTGG	2 cut(s)	652, 944
BseXI	GCAGC	2 cut(s)	167, 985
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	4 cut(s)	237, 282, 843, 1118
BslI	CCNNNNNNNGG	1 cut(s)	850
BsnI	GGCC	4 cut(s)	237, 282, 843, 1118
Bsp143I	GATC	7 cut(s)	59, 415, 430, 445, 544, 862, 1051
BspANI	GGCC	4 cut(s)	237, 282, 843, 1118
BspCNI	CTCAG	1 cut(s)	1043
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	4 cut(s)	423, 425, 857, 1059
BspTI	CTTAAG	2 cut(s)	26, 901
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	652, 944
BssECI	CCNNGG	2 cut(s)	277, 844
BssMI	GATC	7 cut(s)	59, 415, 430, 445, 544, 862, 1051
BssNAI	GTATAC	1 cut(s)	214
BssT1I	CCWWGG	2 cut(s)	277, 844
Bst1107I	GTATAC	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	101, 542
Bst6I	CTCTTC	2 cut(s)	282, 691
BstAFI	CTTAAG	2 cut(s)	26, 901
BstC8I	GCNNGC	4 cut(s)	239, 556, 896, 1023
BstDEI	CTNAG	1 cut(s)	1030
BstF5I	GGATG	3 cut(s)	577, 956, 1045
BstKTI	GATC	7 cut(s)	62, 418, 433, 448, 547, 865, 1054
BstMBI	GATC	7 cut(s)	59, 415, 430, 445, 544, 862, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 786
BstNSI	RCATGY	2 cut(s)	13, 400
BstV1I	GCAGC	2 cut(s)	167, 985
BstX2I	RGATCY	2 cut(s)	415, 862
BstYI	RGATCY	2 cut(s)	415, 862
BstZ17I	GTATAC	1 cut(s)	214
BsuRI	GGCC	4 cut(s)	237, 282, 843, 1118
BtsCI	GGATG	3 cut(s)	577, 956, 1045
BtsI	GCAGTG	2 cut(s)	255, 320
BtsIMutI	CAGTG	3 cut(s)	255, 320, 645
Cac8I	GCNNGC	4 cut(s)	239, 556, 896, 1023
Cfr13I	GGNCC	3 cut(s)	206, 235, 1117
Csp6I	GTAC	4 cut(s)	23, 93, 222, 394
CviAII	CATG	8 cut(s)	10, 329, 397, 712, 777, 850, 910, 961
CviQI	GTAC	4 cut(s)	23, 93, 222, 394
DdeI	CTNAG	1 cut(s)	1030
DpnI	GATC	7 cut(s)	61, 417, 432, 447, 546, 864, 1053
DpnII	GATC	7 cut(s)	59, 415, 430, 445, 544, 862, 1051
DraIII	CACNNNGTG	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	282, 691
EarI	CTCTTC	2 cut(s)	282, 691
Eco130I	CCWWGG	2 cut(s)	277, 844
Eco147I	AGGCCT	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	206
EcoT14I	CCWWGG	2 cut(s)	277, 844
EcoT22I	ATGCAT	1 cut(s)	911
ErhI	CCWWGG	2 cut(s)	277, 844
FaeI	CATG	8 cut(s)	13, 332, 400, 715, 780, 853, 913, 964
FatI	CATG	8 cut(s)	9, 328, 396, 711, 776, 849, 909, 960
FauNDI	CATATG	2 cut(s)	667, 823
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	156, 999
FokI	GGATG	3 cut(s)	584, 943, 1052
Fsp4HI	GCNGC	2 cut(s)	156, 999
FspBI	CTAG	5 cut(s)	338, 555, 608, 812, 872
GluI	GCNGC	2 cut(s)	156, 999
GsuI	CTGGAG	1 cut(s)	986
HaeIII	GGCC	4 cut(s)	237, 282, 843, 1118
Hin1II	CATG	8 cut(s)	13, 332, 400, 715, 780, 853, 913, 964
HindIII	AAGCTT	2 cut(s)	185, 409
HinfI	GANTC	2 cut(s)	334, 878
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	3 cut(s)	214, 472, 727
Hpy188I	TCNGA	4 cut(s)	549, 598, 623, 1108
Hpy188III	TCNNGA	3 cut(s)	812, 872, 985
Hpy8I	GTNNAC	3 cut(s)	214, 472, 727
HpyAV	CCTTC	4 cut(s)	226, 476, 818, 833
HpyCH4III	ACNGT	2 cut(s)	101, 542
HpyCH4IV	ACGT	2 cut(s)	224, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 786
HpyF3I	CTNAG	1 cut(s)	1030
HpySE526I	ACGT	2 cut(s)	224, 466
Hsp92II	CATG	8 cut(s)	13, 332, 400, 715, 780, 853, 913, 964
Kzo9I	GATC	7 cut(s)	59, 415, 430, 445, 544, 862, 1051
LmnI	GCTCC	2 cut(s)	121, 460
Lsp1109I	GCAGC	2 cut(s)	167, 985
LweI	GCATC	5 cut(s)	369, 431, 896, 969, 1084
MaeI	CTAG	5 cut(s)	338, 555, 608, 812, 872
MaeII	ACGT	2 cut(s)	224, 466
MaeIII	GTNAC	2 cut(s)	5, 304
MalI	GATC	7 cut(s)	61, 417, 432, 447, 546, 864, 1053
MboI	GATC	7 cut(s)	59, 415, 430, 445, 544, 862, 1051
MboII	GAAGA	6 cut(s)	299, 383, 708, 966, 1055, 1085
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	2 cut(s)	415, 862
MluCI	AATT	5 cut(s)	33, 489, 534, 716, 1110
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	9 cut(s)	187, 295, 360, 434, 631, 692, 907, 961, 1042
Mph1103I	ATGCAT	1 cut(s)	911
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	5 cut(s)	27, 77, 227, 902, 1035
MspCI	CTTAAG	2 cut(s)	26, 901
MunI	CAATTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	460, 786
NdeI	CATATG	2 cut(s)	667, 823
NdeII	GATC	7 cut(s)	59, 415, 430, 445, 544, 862, 1051
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	8 cut(s)	13, 332, 400, 715, 780, 853, 913, 964
NmuCI	GTSAC	1 cut(s)	304
NsiI	ATGCAT	1 cut(s)	911
NspI	RCATGY	2 cut(s)	13, 400
PceI	AGGCCT	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	334, 878
PflFI	GACNNNGTC	1 cut(s)	886
PflMI	CCANNNNNTGG	1 cut(s)	850
PkrI	GCNGC	2 cut(s)	157, 1000
PspPI	GGNCC	3 cut(s)	206, 235, 1117
PsuI	RGATCY	2 cut(s)	415, 862
PsyI	GACNNNGTC	1 cut(s)	886
RsaI	GTAC	4 cut(s)	24, 94, 223, 395
RsaNI	GTAC	4 cut(s)	23, 93, 222, 394
SaqAI	TTAA	5 cut(s)	27, 77, 227, 902, 1035
SatI	GCNGC	2 cut(s)	156, 999
Sau3AI	GATC	7 cut(s)	59, 415, 430, 445, 544, 862, 1051
Sau96I	GGNCC	3 cut(s)	206, 235, 1117
ScaI	AGTACT	1 cut(s)	24
SfaNI	GCATC	5 cut(s)	369, 431, 896, 969, 1084
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	4 cut(s)	26, 635, 901, 983
SmoI	CTYRAG	4 cut(s)	26, 635, 901, 983
Sse9I	AATT	5 cut(s)	33, 489, 534, 716, 1110
SseBI	AGGCCT	1 cut(s)	282
SspMI	CTAG	5 cut(s)	338, 555, 608, 812, 872
StuI	AGGCCT	1 cut(s)	282
StyI	CCWWGG	2 cut(s)	277, 844
TaaI	ACNGT	2 cut(s)	101, 542
TaiI	ACGT	2 cut(s)	227, 469
TaqI	TCGA	5 cut(s)	173, 263, 720, 881, 977
TasI	AATT	5 cut(s)	33, 489, 534, 716, 1110
TatI	WGTACW	3 cut(s)	22, 92, 393
TfiI	GAWTC	2 cut(s)	334, 878
Tru1I	TTAA	5 cut(s)	27, 77, 227, 902, 1035
Tru9I	TTAA	5 cut(s)	27, 77, 227, 902, 1035
TscAI	CASTG	3 cut(s)	255, 327, 652
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	155, 998
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	596, 645, 728, 765, 1056
TspRI	CASTG	3 cut(s)	255, 327, 652
Tth111I	GACNNNGTC	1 cut(s)	886
Van91I	CCANNNNNTGG	1 cut(s)	850
Vha464I	CTTAAG	2 cut(s)	26, 901
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	716
XbaI	TCTAGA	2 cut(s)	811, 871
XceI	RCATGY	2 cut(s)	13, 400
XmiI	GTMKAC	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	5 cut(s)	338, 555, 608, 812, 872
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.