Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

1390156 .. 1390347

Gene Structure 192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46178

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCTGGTCAGTAAATATTGCTACAATGGAAGGACTTGGATTGGTTACGATGATACGCATAGTATTAGGTCCAAGGTTTCGTATGCTAATGGAAAGTCTCTTCTTGCTTACTTTGCTTGGCATATTGGTGCTGACACAAGTCACACAACTACTCGGACTCTTTCTCAAACAAATAATTACCCTATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0007586 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016192 GO:0016787 GO:0016798 GO:0017144 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032501 GO:0032940 GO:0034774 GO:0035580 GO:0036230 GO:0042119 GO:0042581 GO:0042737 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044237 GO:0044245 GO:0044248 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046348 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060205 GO:0070013 GO:0070820 GO:0071704 GO:0097367 GO:0097708 GO:0099503 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1904724

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

63

Amino Acids

7.19

Weight (kDa)

9.25

Isoelectric Point (pI)

17.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	4 - 45	1.7e-07	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw26I	GTCTC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	69
BoxI	GACNNNNGTC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstPAI	GACNNNNGTC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaiI	YATR	4 cut(s)	60, 84, 123, 185
HinfI	GANTC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	44, 140
MboII	GAAGA	1 cut(s)	92
MluCI	AATT	2 cut(s)	175, 187
MlyI	GAGTC	1 cut(s)	151
MslI	CAYNNNNRTG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PshAI	GACNNNNGTC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	151
SetI	ASST	2 cut(s)	71, 78
SgeI	CNNG	7 cut(s)	17, 48, 85, 116, 129, 150, 165
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	175, 187
SspI	AATATT	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	72
TasI	AATT	2 cut(s)	175, 187
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.