Rh2DG018300

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
1060307 .. 1064050
3744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG018300.1

Sequence Viewer

Length: 2019 bp
ATGGAGTCAAAAACGGTTCAGGTCCTCCTCTTCATCTTGTTCATTTCTCCTCAGTTTCATTCTACATATGCACAAACATGGATTAAAGCTGGTTACTGGTATGCCAGTGGTGAGTCTCCTATTCCTGACATAAACTCTGCCTTGTTTACTCATCTTATTTGTGGTTTTGCCAATGTAAGTTCCTCCAGCTACCAGCTCATCATTCCCTCAGCTGATCAGCAGTACTACTCCAGCTTCACCGAAATCGTTAAGCGAAAAAACCCATCAATCATCACACTCCTGTCCATCTGGAATGGACAAGCTTCAACAGCTCAAGGAATATTGGGTGAAAAGGTCAACTCATCAGTCTTGTCCTCCATGCTCAATCAATCTTCTAGCAGAAGTTCTTTCATTGAATCTTCAATCCAAACCGCAAGGCGCTATGGCTTTTGGGGTATAGACTTGTTTTGGCTGTGGCCTAACACAGAAGCAGATATGATCAACTTGGGAAAGCTGTTGGATGAATGGAGAGCTGCTGTGGATTCTGAGCCAAGAAACTCAAGTCTGTCGAAATTAATGCTGACAATGGCTGTTAAATATGTGCCTTCTTTCGGATCAATGACTTATCCGATTGAGTCTATGAAGAAGAACTTGGATTTTGCACATGTGGTGGCATATGACTATCATCTGCCTTCGAAGGAAAATGTTACTGGTGCTCATGCTGCTCTGTATAACCCAGCAAGTCATGTTAATACAGACTATGGTATAAGGCAGTGGCTAAACAATTCATTTCCTGCTAGCAAACTGGTTATGGGATTGCCTTACCATGGCTATGCGTGGACTCTTGCGAACCCGAATGACAATGGAATTGGAGCGCCTGCAGCTGGTGTAGCTGTGACACAAGATGGTTCCATGAGCTATAAGTACATCAAGTGGTATACTCGAAGCTACGAAGCTAAAATAATGTATAATGCTAGTTATGTTGTGAATTACTGCATCATTGGATTGAACTGGATTGGATTTGATGATGTTGAAGCTATCAGAGCTAAGATTGCATATGCCAAGGAAAAGAAGCTACTTGGTTACAATGTGTTTGTAGTCACCAATGATGACAACTGGGCTCTTTCTTGGGCAGCTCAGGATGAAGAAAATGCTCACGGAAAGAAGAGGCGGTTATTGCTTATAATTTTCCTTCCAATTACTATGATCATCATCCTCATAGCCTCTGTGGTGTGTTACCTGCAAAGAAAATTGTTGAAGACAAAAGGGAAGATAATTCTGCGCAAGTTATATAGATCAGAATCAGCTTTTACTAGTGGTTCTCCAAGTCTGCAAGAATTCAGCTTCTCCACTATCAAAGCCGCTACAAATACCTTCTCAAGTGAAAACTTGCTTGGAGAGGGTGGGTTTGGTCCTGTTTACAAGGGAAAATTGCGAAATGGACAGGAAATAGCTGTGAAACGTCTTTCAAAAACATCAACTCAAGGACTTGAGGAATTCAGAAATGAAGTTACACTCACTGCAAGACTAGAACATGTAAATCTAGTTCGCGTTCTTGGGTTTTGCAGTAAGAAGGAAGAGAAAATGCTGATCTACGAATACATGCCTAACAAAAGCTTGGACTTCTACCTTTTTGATCCTTCCACAAAGCATTTCCTAGACTGGACAAAGCGTGTGCATGTTATTGAAGGGGTTACTCAAGGACTCCTATATCTCCAAGAATACTCTAATTTGACAATTATTCACAGAGACCTAAAAGCTAGCAACATTTTACTTGACCATGAGATGAATGCTAAGATTTCCGACTTTGGAATGGCTAAACTTTTCAAGAAAGATGAAGTTGAAGGAAACACAGGCCGGATTGTTGGAACATACGGCTATGTTCCTCCTGAATATGTAAATAAAGGTATATACTCCATGAAGTACGATGTCTACAGCTTCGGAGTTCTACTTTTGCAAATGATCAGTGGAAGGAGGAGTACAAGCTTCTACGGTCCGAACAGAAGTTTGCACCTTTTGGAATATGTAAGTTATATATAG

Protein Analysis

672

Amino Acids

75.96

Weight (kDa)

9.01

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 30 - 363 9.1e-59 Glycosyl hydrolases family 18
Pkinase PF00069 453 - 652 6.1e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 455 - 652 6.6e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1163
Acc16I TGCGCA 1 cut(s) 1262
Acc36I ACCTGC 1 cut(s) 1227
AccI GTMKAC 2 cut(s) 917, 1911
AccII CGCG 1 cut(s) 1530
AciI CCGC 3 cut(s) 411, 1150, 1341
AclWI GGATC 2 cut(s) 601, 1610
AcsI RAATTY 2 cut(s) 1316, 1475
AfaI GTAC 4 cut(s) 224, 905, 1904, 1960
AfiI CCNNNNNNNGG 3 cut(s) 590, 806, 863
AflIII ACRYGT 2 cut(s) 643, 1513
AhlI ACTAGT 1 cut(s) 1292
AjuI GAANNNNNNNTTGG 4 cut(s) 614, 646, 1356, 1388
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 2 cut(s) 120, 1722
AlwI GGATC 2 cut(s) 601, 1610
AoxI GGCC 2 cut(s) 455, 1834
ApeKI GCWGC 4 cut(s) 512, 701, 860, 1112
ApoI RAATTY 2 cut(s) 1316, 1475
AseI ATTAAT 1 cut(s) 554
AspLEI GCGC 3 cut(s) 420, 856, 1263
AspS9I GGNCC 3 cut(s) 22, 1391, 1973
AsuHPI GGTGA 4 cut(s) 122, 229, 338, 1072
AsuII TTCGAA 1 cut(s) 674
AsuNHI GCTAGC 2 cut(s) 776, 1739
AvaII GGWCC 3 cut(s) 22, 1391, 1973
BanII GRGCYC 1 cut(s) 1102
BarI GAAGNNNNNNTAC 2 cut(s) 1942, 1974
BbsI GAAGAC 1 cut(s) 1244
Bbv12I GWGCWC 1 cut(s) 697
BbvCI CCTCAGC 1 cut(s) 208
BbvI GCAGC 4 cut(s) 499, 688, 872, 1124
BccI CCATC 3 cut(s) 271, 293, 878
BceAI ACGGC 1 cut(s) 1870
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BclI TGATCA 4 cut(s) 214, 477, 1185, 1941
BcoDI GTCTC 2 cut(s) 120, 1722
BcuI ACTAGT 1 cut(s) 1292
BfaI CTAG 8 cut(s) 375, 777, 954, 1293, 1508, 1523, 1637, 1740
BfmI CTRYAG 2 cut(s) 858, 1912
BfoI RGCGCY 2 cut(s) 421, 857
BfuAI ACCTGC 1 cut(s) 1227
BisI GCNGC 5 cut(s) 513, 702, 861, 1113, 1341
BlsI GCNGC 5 cut(s) 514, 703, 862, 1114, 1342
BmcAI AGTACT 1 cut(s) 224
Bme18I GGWCC 3 cut(s) 22, 1391, 1973
BmgT120I GGNCC 3 cut(s) 22, 1391, 1973
BmiI GGNNCC 1 cut(s) 889
BmrI ACTGGG 1 cut(s) 1105
BmsI GCATC 1 cut(s) 984
BmtI GCTAGC 2 cut(s) 780, 1743
BmuI ACTGGG 1 cut(s) 1105
BpiI GAAGAC 1 cut(s) 1244
BpmI CTGGAG 2 cut(s) 169, 214
Bpu10I CCTNAGC 2 cut(s) 208, 1116
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 6 cut(s) 297, 523, 1342, 1446, 1490, 1662
BsaBI GATNNNNATC 2 cut(s) 1190, 1279
BsaI GGTCTC 1 cut(s) 1722
BsaJI CCNNGG 2 cut(s) 805, 1041
Bsc4I CCNNNNNNNGG 3 cut(s) 590, 806, 863
Bse1I ACTGG 7 cut(s) 101, 105, 694, 789, 995, 1100, 1646
Bse8I GATNNNNATC 2 cut(s) 1190, 1279
BseDI CCNNGG 2 cut(s) 805, 1041
BseGI GGATG 3 cut(s) 505, 1126, 1191
BseJI GATNNNNATC 2 cut(s) 1190, 1279
BseLI CCNNNNNNNGG 3 cut(s) 590, 806, 863
BseMII CTCAG 4 cut(s) 65, 222, 516, 1130
BseNI ACTGG 7 cut(s) 101, 105, 694, 789, 995, 1100, 1646
BseRI GAGGAG 3 cut(s) 17, 39, 1969
BseXI GCAGC 4 cut(s) 499, 688, 872, 1124
BseYI CCCAGC 1 cut(s) 715
Bsh1236I CGCG 1 cut(s) 1530
BshFI GGCC 2 cut(s) 457, 1836
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 1 cut(s) 1837
BslI CCNNNNNNNGG 3 cut(s) 590, 806, 863
BsmAI GTCTC 2 cut(s) 120, 1722
BsmI GAATGC 1 cut(s) 1774
BsnI GGCC 2 cut(s) 457, 1836
Bso31I GGTCTC 1 cut(s) 1722
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 2 cut(s) 697, 1102
Bsp143I GATC 8 cut(s) 214, 477, 593, 1185, 1274, 1569, 1615, 1941
Bsp19I CCATGG 1 cut(s) 805
BspACI CCGC 3 cut(s) 411, 1150, 1341
BspANI GGCC 2 cut(s) 457, 1836
BspCNI CTCAG 4 cut(s) 64, 221, 517, 1129
BspFNI CGCG 1 cut(s) 1530
BspLI GGNNCC 1 cut(s) 889
BspMAI CTGCAG 1 cut(s) 862
BspMI ACCTGC 1 cut(s) 1227
BspOI GCTAGC 2 cut(s) 780, 1743
BspPI GGATC 2 cut(s) 601, 1610
BspT104I TTCGAA 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 1722
BsrI ACTGG 7 cut(s) 101, 105, 694, 789, 995, 1100, 1646
BssECI CCNNGG 2 cut(s) 805, 1041
BssMI GATC 8 cut(s) 214, 477, 593, 1185, 1274, 1569, 1615, 1941
BssNAI GTATAC 1 cut(s) 918
BssT1I CCWWGG 2 cut(s) 805, 1041
Bst1107I GTATAC 1 cut(s) 918
Bst4CI ACNGT 2 cut(s) 16, 1973
Bst6I CTCTTC 3 cut(s) 35, 1139, 1551
BstBI TTCGAA 1 cut(s) 674
BstC8I GCNNGC 3 cut(s) 778, 858, 1741
BstDEI CTNAG 6 cut(s) 51, 208, 525, 1026, 1116, 1773
BstDSI CCRYGG 1 cut(s) 805
BstF5I GGATG 3 cut(s) 505, 1126, 1191
BstFNI CGCG 1 cut(s) 1530
BstH2I RGCGCY 2 cut(s) 421, 857
BstHHI GCGC 3 cut(s) 420, 856, 1263
BstKTI GATC 8 cut(s) 217, 480, 596, 1188, 1277, 1572, 1618, 1944
BstMAI GTCTC 2 cut(s) 120, 1722
BstMBI GATC 8 cut(s) 214, 477, 593, 1185, 1274, 1569, 1615, 1941
BstMWI GCNNNNNNNGC 7 cut(s) 308, 701, 860, 869, 1022, 1031, 1156
BstNSI RCATGY 4 cut(s) 647, 1517, 1585, 1661
BstSFI CTRYAG 2 cut(s) 858, 1912
BstUI CGCG 1 cut(s) 1530
BstV1I GCAGC 4 cut(s) 499, 688, 872, 1124
BstV2I GAAGAC 1 cut(s) 1244
BstZ17I GTATAC 1 cut(s) 918
BsuRI GGCC 2 cut(s) 457, 1836
BtgI CCRYGG 1 cut(s) 805
BtsCI GGATG 3 cut(s) 505, 1126, 1191
BtsI GCAGTG 2 cut(s) 758, 1497
BtsIMutI CAGTG 4 cut(s) 112, 758, 1497, 1951
BveI ACCTGC 1 cut(s) 1227
Cac8I GCNNGC 3 cut(s) 778, 858, 1741
CfoI GCGC 3 cut(s) 420, 856, 1263
Cfr13I GGNCC 3 cut(s) 22, 1391, 1973
CpoI CGGWCCG 1 cut(s) 1973
Csp6I GTAC 4 cut(s) 223, 904, 1903, 1959
CspI CGGWCCG 1 cut(s) 1973
CviQI GTAC 4 cut(s) 223, 904, 1903, 1959
DdeI CTNAG 6 cut(s) 51, 208, 525, 1026, 1116, 1773
DpnI GATC 8 cut(s) 216, 479, 595, 1187, 1276, 1571, 1617, 1943
DpnII GATC 8 cut(s) 214, 477, 593, 1185, 1274, 1569, 1615, 1941
Eam1104I CTCTTC 3 cut(s) 35, 1139, 1551
EarI CTCTTC 3 cut(s) 35, 1139, 1551
Eco130I CCWWGG 2 cut(s) 805, 1041
Eco24I GRGCYC 1 cut(s) 1102
Eco31I GGTCTC 1 cut(s) 1722
Eco47I GGWCC 3 cut(s) 22, 1391, 1973
EcoO109I RGGNCCY 1 cut(s) 22
EcoRI GAATTC 2 cut(s) 1316, 1475
EcoT14I CCWWGG 2 cut(s) 805, 1041
EcoT38I GRGCYC 1 cut(s) 1102
ErhI CCWWGG 2 cut(s) 805, 1041
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FauNDI CATATG 3 cut(s) 67, 655, 1036
FbaI TGATCA 4 cut(s) 214, 477, 1185, 1941
FblI GTMKAC 2 cut(s) 917, 1911
Fnu4HI GCNGC 5 cut(s) 513, 702, 861, 1113, 1341
FokI GGATG 3 cut(s) 512, 1133, 1178
FriOI GRGCYC 1 cut(s) 1102
Fsp4HI GCNGC 5 cut(s) 513, 702, 861, 1113, 1341
FspBI CTAG 8 cut(s) 375, 777, 954, 1293, 1508, 1523, 1637, 1740
FspI TGCGCA 1 cut(s) 1262
GlaI GCGC 3 cut(s) 419, 855, 1262
GluI GCNGC 5 cut(s) 513, 702, 861, 1113, 1341
GsaI CCCAGC 1 cut(s) 719
GsuI CTGGAG 2 cut(s) 169, 214
HaeII RGCGCY 2 cut(s) 421, 857
HaeIII GGCC 2 cut(s) 457, 1836
HapII CCGG 1 cut(s) 1837
HhaI GCGC 3 cut(s) 420, 856, 1263
Hin6I GCGC 3 cut(s) 418, 854, 1261
HinP1I GCGC 3 cut(s) 418, 854, 1261
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 3 cut(s) 300, 1594, 1963
HinfI GANTC 8 cut(s) 5, 113, 395, 521, 614, 820, 1280, 1683
HpaII CCGG 1 cut(s) 1837
HphI GGTGA 4 cut(s) 122, 229, 338, 1072
Hpy166II GTNNAC 6 cut(s) 147, 337, 819, 918, 1399, 1912
Hpy188I TCNGA 9 cut(s) 526, 593, 609, 1022, 1279, 1481, 1783, 1922, 1977
Hpy188III TCNNGA 5 cut(s) 125, 289, 1118, 1807, 1868
Hpy8I GTNNAC 6 cut(s) 147, 337, 819, 918, 1399, 1912
HpyCH4III ACNGT 2 cut(s) 16, 1973
HpyCH4IV ACGT 1 cut(s) 1441
HpyF10VI GCNNNNNNNGC 7 cut(s) 308, 701, 860, 869, 1022, 1031, 1156
HpyF3I CTNAG 6 cut(s) 51, 208, 525, 1026, 1116, 1773
HpySE526I ACGT 1 cut(s) 1441
HspAI GCGC 3 cut(s) 418, 854, 1261
Ksp22I TGATCA 4 cut(s) 214, 477, 1185, 1941
Kzo9I GATC 8 cut(s) 214, 477, 593, 1185, 1274, 1569, 1615, 1941
LmnI GCTCC 1 cut(s) 851
Lsp1109I GCAGC 4 cut(s) 499, 688, 872, 1124
LweI GCATC 1 cut(s) 984
MaeI CTAG 8 cut(s) 375, 777, 954, 1293, 1508, 1523, 1637, 1740
MaeII ACGT 1 cut(s) 1441
MaeIII GTNAC 8 cut(s) 92, 685, 874, 1061, 1078, 1214, 1489, 1672
MalI GATC 8 cut(s) 216, 479, 595, 1187, 1276, 1571, 1617, 1943
MboI GATC 8 cut(s) 214, 477, 593, 1185, 1274, 1569, 1615, 1941
MhlI GDGCHC 2 cut(s) 697, 1102
MlyI GAGTC 5 cut(s) 14, 122, 623, 814, 1677
MmeI TCCRAC 3 cut(s) 477, 1806, 1825
MseI TTAA 5 cut(s) 84, 249, 554, 573, 729
MslI CAYNNNNRTG 2 cut(s) 76, 810
MspA1I CMGCKG 2 cut(s) 212, 863
MspI CCGG 1 cut(s) 1837
Mva1269I GAATGC 1 cut(s) 1774
MvnI CGCG 1 cut(s) 1530
MwoI GCNNNNNNNGC 7 cut(s) 308, 701, 860, 869, 1022, 1031, 1156
NcoI CCATGG 1 cut(s) 805
NdeI CATATG 3 cut(s) 67, 655, 1036
NdeII GATC 8 cut(s) 214, 477, 593, 1185, 1274, 1569, 1615, 1941
NheI GCTAGC 2 cut(s) 776, 1739
NlaIV GGNNCC 1 cut(s) 889
NmuCI GTSAC 2 cut(s) 874, 1078
NsbI TGCGCA 1 cut(s) 1262
NspI RCATGY 4 cut(s) 647, 1517, 1585, 1661
NspV TTCGAA 1 cut(s) 674
PciI ACATGT 2 cut(s) 643, 1513
PctI GAATGC 1 cut(s) 1774
PfeI GAWTC 3 cut(s) 395, 521, 1280
PkrI GCNGC 5 cut(s) 514, 703, 862, 1114, 1342
PleI GAGTC 5 cut(s) 13, 121, 622, 814, 1677
PpsI GAGTC 5 cut(s) 13, 121, 622, 814, 1677
PpuMI RGGWCCY 1 cut(s) 22
PscI ACATGT 2 cut(s) 643, 1513
PshBI ATTAAT 1 cut(s) 554
PsiI TTATAA 1 cut(s) 1163
Psp5II RGGWCCY 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 715
PspN4I GGNNCC 1 cut(s) 889
PspPI GGNCC 3 cut(s) 22, 1391, 1973
PspPPI RGGWCCY 1 cut(s) 22
PsrI GAACNNNNNNTAC 2 cut(s) 1509, 1541
PstI CTGCAG 1 cut(s) 862
PvuII CAGCTG 2 cut(s) 212, 863
RsaI GTAC 4 cut(s) 224, 905, 1904, 1960
RsaNI GTAC 4 cut(s) 223, 904, 1903, 1959
RseI CAYNNNNRTG 2 cut(s) 76, 810
Rsr2I CGGWCCG 1 cut(s) 1973
RsrII CGGWCCG 1 cut(s) 1973
SaqAI TTAA 5 cut(s) 84, 249, 554, 573, 729
SatI GCNGC 5 cut(s) 513, 702, 861, 1113, 1341
Sau3AI GATC 8 cut(s) 214, 477, 593, 1185, 1274, 1569, 1615, 1941
Sau96I GGNCC 3 cut(s) 22, 1391, 1973
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 5 cut(s) 14, 122, 623, 814, 1677
SduI GDGCHC 2 cut(s) 697, 1102
SfaNI GCATC 1 cut(s) 984
SfcI CTRYAG 2 cut(s) 858, 1912
SfuI TTCGAA 1 cut(s) 674
SinI GGWCC 3 cut(s) 22, 1391, 1973
SmiMI CAYNNNNRTG 2 cut(s) 76, 810
SmlI CTYRAG 6 cut(s) 312, 538, 1357, 1461, 1469, 1677
SmoI CTYRAG 6 cut(s) 312, 538, 1357, 1461, 1469, 1677
SpeI ACTAGT 1 cut(s) 1292
SsiI CCGC 3 cut(s) 411, 1150, 1341
SspI AATATT 1 cut(s) 321
SspMI CTAG 8 cut(s) 375, 777, 954, 1293, 1508, 1523, 1637, 1740
StyI CCWWGG 2 cut(s) 805, 1041
TaaI ACNGT 2 cut(s) 16, 1973
TaiI ACGT 1 cut(s) 1444
TaqI TCGA 3 cut(s) 548, 674, 922
TatI WGTACW 3 cut(s) 222, 903, 1958
TauI GCSGC 1 cut(s) 1343
TfiI GAWTC 3 cut(s) 395, 521, 1280
Tru1I TTAA 5 cut(s) 84, 249, 554, 573, 729
Tru9I TTAA 5 cut(s) 84, 249, 554, 573, 729
TscAI CASTG 4 cut(s) 112, 758, 1504, 1951
TseFI GTSAC 2 cut(s) 874, 1078
TseI GCWGC 4 cut(s) 512, 701, 860, 1112
Tsp45I GTSAC 2 cut(s) 874, 1078
TspGWI ACGGA 1 cut(s) 1152
TspRI CASTG 4 cut(s) 112, 758, 1504, 1951
VpaK11BI GGWCC 3 cut(s) 22, 1391, 1973
VspI ATTAAT 1 cut(s) 554
XapI RAATTY 2 cut(s) 1316, 1475
XceI RCATGY 4 cut(s) 647, 1517, 1585, 1661
XmiI GTMKAC 2 cut(s) 917, 1911
XspI CTAG 8 cut(s) 375, 777, 954, 1293, 1508, 1523, 1637, 1740
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.