Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

587963 .. 588814

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAGGTTATGTATGAGAACTGAATTAGCTATTTCCATGGAATTCAGAAATATCTCCTATCTGATCATCCCCTTCATCTTCCTTGTTTCTTGTTCCTCTGCACAAACTTGGATAAGAGCCGGTTACTGGTACGCCGGCAGCGAGTCTCCTATACCGGAGATAAATTCTGCCTTGTTCACTCATCTTATCTGTGGTTTTGCTGATGTGAATTCCTCCACCTACCAGCTCTCCATCCCTTCTGCTCATGTCCAATACTTTTCGAGCTTCACAGATATTGTCAAGCGAAAGAACCCGTCCACCATCACACTCCTATCCATCTGGAATGGACTGGCTGAAATAAGACGAGCGACTTTGGGCGGCGAGAACGCTAACTTTTCTGTCATGTCCTCAATGCTCGAAAAGCCTTCTAATAGAAAGTCTTTCATTGAGTCTTCCATCAAAATGGCAAGGCGTTATGGATTTCAGGGTATAGACTTAGACTGGATGTGGCCTAACGAAGCCTCCGATATGATCAACATGGGTAAGATGTTGGATGAGTGGCGAGCTGCTGTGACTTTTGAGTCGAGAAACTCAAGTCAGTCACGGTTAATGCTGACAATGGCCGTTCGCTACTTGCCTGCTTTTGAATCGTTGATTTATCCACTCGAATCTATGAAGAGGAATTTGGACTGGGCGCATGTTTTGTCGTATGACTATCATCTGTCTTCGAAGGAGAATGTTACCGGTGCTCATGCTGCTTTATACGACCCTTTCAGCCATGTTAACACAGATTATGGCATAAGGCAATGGTTTAACTACTCGTTTCCTGCTAGCAAACTTGTTTTAGGTTTGCCTTACCACGGCTATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

284

Amino Acids

32.34

Weight (kDa)

7.74

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	40 - 282	7.2e-44	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	559
AciI	CCGC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	4 cut(s)	41, 163, 208, 661
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	126, 839
AgeI	ACCGGT	1 cut(s)	722
AgsI	TTSAA	1 cut(s)	626
AjuI	GAANNNNNNNTTGG	2 cut(s)	647, 679
AluBI	AGCT	4 cut(s)	29, 226, 264, 545
AluI	AGCT	4 cut(s)	29, 226, 264, 545
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	1 cut(s)	150
AoxI	GGCC	2 cut(s)	488, 600
ApeKI	GCWGC	3 cut(s)	138, 545, 734
ApoI	RAATTY	4 cut(s)	41, 163, 208, 661
AsiGI	ACCGGT	1 cut(s)	722
AspLEI	GCGC	1 cut(s)	676
AsuII	TTCGAA	1 cut(s)	707
AsuNHI	GCTAGC	1 cut(s)	809
BbsI	GAAGAC	2 cut(s)	423, 696
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	3 cut(s)	150, 532, 721
BccI	CCATC	4 cut(s)	239, 308, 323, 443
BceAI	ACGGC	1 cut(s)	587
BclI	TGATCA	2 cut(s)	63, 510
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	810
BisI	GCNGC	4 cut(s)	139, 358, 546, 735
BlsI	GCNGC	4 cut(s)	140, 359, 547, 736
BmrI	ACTGGG	1 cut(s)	679
BmtI	GCTAGC	1 cut(s)	813
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	2 cut(s)	423, 696
Bpu14I	TTCGAA	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	36, 838
BsaWI	WCCGGW	2 cut(s)	154, 722
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 485, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 839
Bse118I	RCCGGY	3 cut(s)	119, 134, 722
Bse1I	ACTGG	4 cut(s)	131, 333, 485, 674
Bse3DI	GCAATG	1 cut(s)	791
BseDI	CCNNGG	2 cut(s)	36, 838
BseGI	GGATG	4 cut(s)	66, 231, 489, 538
BseLI	CCNNNNNNNGG	2 cut(s)	126, 839
BseMI	GCAATG	1 cut(s)	791
BseNI	ACTGG	4 cut(s)	131, 333, 485, 674
BseXI	GCAGC	3 cut(s)	150, 532, 721
BsgI	GTGCAG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	490, 602
BshTI	ACCGGT	1 cut(s)	722
BsiHKAI	GWGCWC	1 cut(s)	730
BsiSI	CCGG	4 cut(s)	120, 135, 155, 723
BslI	CCNNNNNNNGG	2 cut(s)	126, 839
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	490, 602
Bsp119I	TTCGAA	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	2 cut(s)	63, 510
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	1 cut(s)	357
BspANI	GGCC	2 cut(s)	490, 602
BspOI	GCTAGC	1 cut(s)	813
BspT104I	TTCGAA	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	791
BsrFI	RCCGGY	3 cut(s)	119, 134, 722
BsrI	ACTGG	4 cut(s)	131, 333, 485, 674
BssAI	RCCGGY	3 cut(s)	119, 134, 722
BssECI	CCNNGG	2 cut(s)	36, 838
BssMI	GATC	2 cut(s)	63, 510
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	585
Bst6I	CTCTTC	1 cut(s)	650
BstBI	TTCGAA	1 cut(s)	707
BstC8I	GCNNGC	4 cut(s)	136, 543, 618, 811
BstDEI	CTNAG	1 cut(s)	475
BstDSI	CCRYGG	2 cut(s)	36, 838
BstF5I	GGATG	4 cut(s)	66, 231, 489, 538
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	2 cut(s)	66, 513
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	63, 510
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 734
BstNSI	RCATGY	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	150, 532, 721
BstV2I	GAAGAC	2 cut(s)	423, 696
BstXI	CCANNNNNNTGG	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	490, 602
BtgI	CCRYGG	2 cut(s)	36, 838
BtsCI	GGATG	4 cut(s)	66, 231, 489, 538
Cac8I	GCNNGC	4 cut(s)	136, 543, 618, 811
CfoI	GCGC	1 cut(s)	676
Cfr10I	RCCGGY	3 cut(s)	119, 134, 722
Csp6I	GTAC	1 cut(s)	130
CspAI	ACCGGT	1 cut(s)	722
CviAII	CATG	7 cut(s)	37, 245, 382, 517, 677, 731, 758
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	475
DpnI	GATC	2 cut(s)	65, 512
DpnII	GATC	2 cut(s)	63, 510
DrdI	GACNNNNNNGTC	1 cut(s)	559
DseDI	GACNNNNNNGTC	1 cut(s)	559
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
Eco130I	CCWWGG	1 cut(s)	36
EcoRI	GAATTC	2 cut(s)	41, 208
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	850
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	7 cut(s)	40, 248, 385, 520, 680, 734, 761
FatI	CATG	7 cut(s)	36, 244, 381, 516, 676, 730, 757
FbaI	TGATCA	2 cut(s)	63, 510
Fnu4HI	GCNGC	4 cut(s)	139, 358, 546, 735
FokI	GGATG	4 cut(s)	53, 218, 496, 545
Fsp4HI	GCNGC	4 cut(s)	139, 358, 546, 735
FspBI	CTAG	1 cut(s)	810
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	4 cut(s)	139, 358, 546, 735
HaeIII	GGCC	2 cut(s)	490, 602
HapII	CCGG	4 cut(s)	120, 135, 155, 723
HhaI	GCGC	1 cut(s)	676
Hin1II	CATG	7 cut(s)	40, 248, 385, 520, 680, 734, 761
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	5 cut(s)	143, 428, 560, 626, 647
HpaI	GTTAAC	1 cut(s)	763
HpaII	CCGG	4 cut(s)	120, 135, 155, 723
Hpy166II	GTNNAC	3 cut(s)	177, 297, 763
Hpy188I	TCNGA	3 cut(s)	47, 63, 505
Hpy188III	TCNNGA	2 cut(s)	319, 564
Hpy8I	GTNNAC	3 cut(s)	177, 297, 763
HpyAV	CCTTC	4 cut(s)	82, 246, 414, 703
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4V	TGCA	2 cut(s)	101, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 734
HpyF3I	CTNAG	1 cut(s)	475
Hsp92II	CATG	7 cut(s)	40, 248, 385, 520, 680, 734, 761
HspAI	GCGC	1 cut(s)	674
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Ksp22I	TGATCA	2 cut(s)	63, 510
KspAI	GTTAAC	1 cut(s)	763
Kzo9I	GATC	2 cut(s)	63, 510
Lsp1109I	GCAGC	3 cut(s)	150, 532, 721
MaeI	CTAG	1 cut(s)	810
MaeIII	GTNAC	4 cut(s)	122, 550, 579, 718
MalI	GATC	2 cut(s)	65, 512
MboI	GATC	2 cut(s)	63, 510
MboII	GAAGA	4 cut(s)	70, 423, 667, 696
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	5 cut(s)	23, 41, 163, 208, 661
MlyI	GAGTC	3 cut(s)	152, 437, 569
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	5 cut(s)	106, 223, 397, 511, 651
Mph1103I	ATGCAT	1 cut(s)	850
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	3 cut(s)	587, 762, 792
MslI	CAYNNNNRTG	2 cut(s)	440, 843
MspI	CCGG	4 cut(s)	120, 135, 155, 723
MwoI	GCNNNNNNNGC	2 cut(s)	400, 734
NaeI	GCCGGC	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	2 cut(s)	63, 510
NgoMIV	GCCGGC	1 cut(s)	134
NheI	GCTAGC	1 cut(s)	809
NlaIII	CATG	7 cut(s)	40, 248, 385, 520, 680, 734, 761
NmuCI	GTSAC	2 cut(s)	550, 579
NsiI	ATGCAT	1 cut(s)	850
NspI	RCATGY	1 cut(s)	680
NspV	TTCGAA	1 cut(s)	707
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 501
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	626, 647
PinAI	ACCGGT	1 cut(s)	722
PkrI	GCNGC	4 cut(s)	140, 359, 547, 736
PleI	GAGTC	3 cut(s)	151, 436, 568
PpsI	GAGTC	3 cut(s)	151, 436, 568
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	2 cut(s)	440, 843
SaqAI	TTAA	3 cut(s)	587, 762, 792
SatI	GCNGC	4 cut(s)	139, 358, 546, 735
Sau3AI	GATC	2 cut(s)	63, 510
SchI	GAGTC	3 cut(s)	152, 437, 569
SduI	GDGCHC	1 cut(s)	730
SetI	ASST	7 cut(s)	8, 31, 221, 228, 266, 547, 829
SfuI	TTCGAA	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	440, 843
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
Sse9I	AATT	5 cut(s)	23, 41, 163, 208, 661
SsiI	CCGC	1 cut(s)	357
SspMI	CTAG	1 cut(s)	810
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	585
TaqI	TCGA	5 cut(s)	260, 396, 563, 645, 707
TasI	AATT	5 cut(s)	23, 41, 163, 208, 661
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	626, 647
Tru1I	TTAA	3 cut(s)	587, 762, 792
Tru9I	TTAA	3 cut(s)	587, 762, 792
TseFI	GTSAC	2 cut(s)	550, 579
TseI	GCWGC	3 cut(s)	138, 545, 734
Tsp45I	GTSAC	2 cut(s)	550, 579
TspDTI	ATGAA	3 cut(s)	64, 412, 668
XapI	RAATTY	4 cut(s)	41, 163, 208, 661
XceI	RCATGY	1 cut(s)	680
XspI	CTAG	1 cut(s)	810
Zsp2I	ATGCAT	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.