Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Reverse (-)

76668336 .. 76670962

Gene Structure 2627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52922

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGATCATCATCCTCATAGCCTCTGTGGTGTGTTACCTGCAAAGAAAATTGTTGAAGACAAAAGGGAAGATAATTATGTGCAAGTTATGTCGATCAGAATCAGCTTTTACTAGTGGTTCTCCAAGTCTGCAGGAATTCAGCTTCTCCACTATCAAAGCGGCTACAAATACCTTCTCAAGTGAAAACTTGCTTGGAGAGGGTGGGTTTGGTCCTGTTTACAAGGGAAAATTGCTAAATGGACAGGAAATAGCTGTGAAACGTCTTTCAAAAACATCAACTCAAGGACTTGAGGAATTCAGAAATGAAGTTACACTCACTGCAAGACTAGAACATGTAAATCTAGTTCGCGTTCTTAGGTTTTGCAGTAAGAAGGAAGAGAAAATGCTGGTCTACGAATACATGCCTAACAAAAGCTTGGACTTCTACCTTTTTGATCCTTCCACAAAGCATTTCCTAGACTGGACAAAGCGTGTGCATGTTATTGAAGGGGTTACTCAAGGACTCCTATATCTCCAAGAATACTCTAATTTGACAATTATTCACAGAGACCTAAAAGCTAGCAACATTTTACTTGACCATGAGATGAATGCTAAGATTTCCGACTTTGGAATGGCTAAACTTTTCAAGAAAGATGAAGTTGAAGGAAACACAGGCCGGATTGTTGGAACATACGGCTATGTTCCTCCTGAATATGTAAATAAAGGTATATACTCCATGAAGTACGATGTCTACAGCTTCGGAGTTCTACTTTTGCAAATGACCAGTGGAAGGAGGAGTACAAGCTTCTACGGTCCGAACAGAAGTTTGCACCTTTTGGAATATAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

276

Amino Acids

31.48

Weight (kDa)

9.23

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	59 - 258	2.3e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	61 - 258	3.4e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccI	GTMKAC	2 cut(s)	390, 729
AccII	CGCG	1 cut(s)	348
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	2 cut(s)	134, 293
AfaI	GTAC	2 cut(s)	722, 778
AfiI	CCNNNNNNNGG	1 cut(s)	768
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	55, 267, 485, 625, 641
AhlI	ACTAGT	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	7 cut(s)	104, 141, 251, 414, 557, 735, 783
AluI	AGCT	7 cut(s)	104, 141, 251, 414, 557, 735, 783
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	428
AoxI	GGCC	1 cut(s)	652
ApoI	RAATTY	2 cut(s)	134, 293
AspS9I	GGNCC	2 cut(s)	209, 791
AsuNHI	GCTAGC	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	209, 791
BarI	GAAGNNNNNNTAC	2 cut(s)	760, 792
BbsI	GAAGAC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	688
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	540
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	5 cut(s)	111, 326, 341, 455, 558
BfmI	CTRYAG	2 cut(s)	128, 730
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme18I	GGWCC	2 cut(s)	209, 791
BmgT120I	GGNCC	2 cut(s)	209, 791
BmtI	GCTAGC	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	62
BpuEI	CTTGAG	4 cut(s)	160, 264, 308, 480
BsaBI	GATNNNNATC	2 cut(s)	8, 97
BsaI	GGTCTC	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	1 cut(s)	768
Bse1I	ACTGG	2 cut(s)	464, 762
Bse8I	GATNNNNATC	2 cut(s)	8, 97
BseGI	GGATG	1 cut(s)	9
BseJI	GATNNNNATC	2 cut(s)	8, 97
BseLI	CCNNNNNNNGG	1 cut(s)	768
BseNI	ACTGG	2 cut(s)	464, 762
BseRI	GAGGAG	1 cut(s)	787
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	768
BsmAI	GTCTC	1 cut(s)	540
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	1 cut(s)	654
Bso31I	GGTCTC	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	3, 92, 433
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	654
BspFNI	CGCG	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	45
BspOI	GCTAGC	1 cut(s)	561
BspPI	GGATC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	540
BsrI	ACTGG	2 cut(s)	464, 762
BssMI	GATC	3 cut(s)	3, 92, 433
Bst4CI	ACNGT	1 cut(s)	791
Bst6I	CTCTTC	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	2 cut(s)	353, 591
BstF5I	GGATG	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	348
BstKTI	GATC	3 cut(s)	6, 95, 436
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	3 cut(s)	3, 92, 433
BstNSI	RCATGY	3 cut(s)	335, 403, 479
BstSFI	CTRYAG	2 cut(s)	128, 730
BstUI	CGCG	1 cut(s)	348
BstV2I	GAAGAC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	654
BtsCI	GGATG	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	2 cut(s)	315, 769
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	209, 791
CpoI	CGGWCCG	1 cut(s)	791
Csp6I	GTAC	2 cut(s)	721, 777
CspI	CGGWCCG	1 cut(s)	791
CviAII	CATG	5 cut(s)	332, 400, 476, 578, 715
CviQI	GTAC	2 cut(s)	721, 777
DdeI	CTNAG	2 cut(s)	353, 591
DpnI	GATC	3 cut(s)	5, 94, 435
DpnII	GATC	3 cut(s)	3, 92, 433
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	540
Eco47I	GGWCC	2 cut(s)	209, 791
EcoRI	GAATTC	2 cut(s)	134, 293
FaeI	CATG	5 cut(s)	335, 403, 479, 581, 718
FatI	CATG	5 cut(s)	331, 399, 475, 577, 714
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	390, 729
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	5 cut(s)	111, 326, 341, 455, 558
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	654
HapII	CCGG	1 cut(s)	655
Hin1II	CATG	5 cut(s)	335, 403, 479, 581, 718
HindIII	AAGCTT	2 cut(s)	412, 781
HinfI	GANTC	2 cut(s)	98, 501
HpaII	CCGG	1 cut(s)	655
Hpy166II	GTNNAC	3 cut(s)	217, 391, 730
Hpy188I	TCNGA	5 cut(s)	97, 299, 601, 740, 795
Hpy188III	TCNNGA	2 cut(s)	625, 686
Hpy8I	GTNNAC	3 cut(s)	217, 391, 730
HpyAV	CCTTC	6 cut(s)	181, 364, 447, 479, 635, 762
HpyCH4III	ACNGT	1 cut(s)	791
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	8 cut(s)	40, 81, 130, 320, 363, 475, 754, 808
HpyF3I	CTNAG	2 cut(s)	353, 591
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	5 cut(s)	335, 403, 479, 581, 718
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 92, 433
MaeI	CTAG	5 cut(s)	111, 326, 341, 455, 558
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	3 cut(s)	32, 307, 490
MalI	GATC	3 cut(s)	5, 94, 435
MboI	GATC	3 cut(s)	3, 92, 433
MboII	GAAGA	3 cut(s)	67, 79, 386
MluCI	AATT	8 cut(s)	47, 72, 134, 227, 293, 526, 534, 823
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	2 cut(s)	624, 643
MnlI	CCTC	6 cut(s)	23, 31, 190, 283, 693, 765
MspI	CCGG	1 cut(s)	655
Mva1269I	GAATGC	1 cut(s)	592
MvnI	CGCG	1 cut(s)	348
NdeII	GATC	3 cut(s)	3, 92, 433
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	5 cut(s)	335, 403, 479, 581, 718
NspI	RCATGY	3 cut(s)	335, 403, 479
PciI	ACATGT	1 cut(s)	331
PctI	GAATGC	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
PscI	ACATGT	1 cut(s)	331
PspPI	GGNCC	2 cut(s)	209, 791
PsrI	GAACNNNNNNTAC	2 cut(s)	327, 359
PstI	CTGCAG	1 cut(s)	132
RsaI	GTAC	2 cut(s)	722, 778
RsaNI	GTAC	2 cut(s)	721, 777
Rsr2I	CGGWCCG	1 cut(s)	791
RsrII	CGGWCCG	1 cut(s)	791
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	3 cut(s)	3, 92, 433
Sau96I	GGNCC	2 cut(s)	209, 791
SchI	GAGTC	1 cut(s)	495
SfcI	CTRYAG	2 cut(s)	128, 730
SinI	GGWCC	2 cut(s)	209, 791
SmlI	CTYRAG	4 cut(s)	175, 279, 287, 495
SmoI	CTYRAG	4 cut(s)	175, 279, 287, 495
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	8 cut(s)	47, 72, 134, 227, 293, 526, 534, 823
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	5 cut(s)	111, 326, 341, 455, 558
TaaI	ACNGT	1 cut(s)	791
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	91
TasI	AATT	8 cut(s)	47, 72, 134, 227, 293, 526, 534, 823
TatI	WGTACW	1 cut(s)	776
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	2 cut(s)	322, 769
TspDTI	ATGAA	4 cut(s)	318, 599, 648, 731
TspRI	CASTG	2 cut(s)	322, 769
VpaK11BI	GGWCC	2 cut(s)	209, 791
XapI	RAATTY	2 cut(s)	134, 293
XceI	RCATGY	3 cut(s)	335, 403, 479
XmiI	GTMKAC	2 cut(s)	390, 729
XspI	CTAG	5 cut(s)	111, 326, 341, 455, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.