Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004948.1

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

51324 .. 52814

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004948.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggagtcaaaacaatccacccgatcctcctcttcatcttcttcattctcctcttcatcttcttcatttcttctcagtttcattcttcatatgcacaatcatggattagagctggttattgtcctagtctctccgagccgactatcagtgctactgccaccgatactagcgaagcaagggcaaaagtcctttcccgaaaggctagagaagaatcttgtggcgaggttggtgctctcctcgtccacaacgcttgaagaagaagtcaggtcaagggactaccccgacgactgcaccctacgctaccagctcatcattccctcagctgatcagctgtactactccagcttcaccgacatcgttaagcgaaaaaacccgtcaatcatcacactcctgtccatctggaatggacaagcttcaacagctcaaggaatattgggtgacaaggccaactcatcagtcttgtcctccatgctcaatcagtcttctagcagaaggtccttcattgagtattcaatccaaaccgcaaggcgctacgacttttggggtatagacttgttttggctatggcctaacacagaagcagacatgatcaatttgagaaagctgttggatgaatggagagctactgtggattctgagctaagaaactcaagtcattcgaaattaatgctgacaatggctgttaaatatgtgccatctttcggatcaatgacttatccgattgagtctatgaagaggaacttggattttgcacatgcggtggtgtatgactatcatctgcctttgaaggaaaatgttactggccggtgctcatgctgctctatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

275

Amino Acids

31.13

Weight (kDa)

8.61

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	522, 758
AclWI	GGATC	2 cut(s)	18, 712
AcoI	YGGCCR	1 cut(s)	802
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	4 cut(s)	254, 417, 513, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
Alw21I	GWGCWC	2 cut(s)	234, 812
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	2 cut(s)	18, 712
AoxI	GGCC	3 cut(s)	444, 566, 802
ApeKI	GCWGC	1 cut(s)	816
AseI	ATTAAT	1 cut(s)	665
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	340, 449
AsuII	TTCGAA	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	2 cut(s)	234, 812
BbvCI	CCTCAGC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	803
BccI	CCATC	2 cut(s)	404, 703
BcgI	CGANNNNNNTGC	4 cut(s)	211, 245, 649, 683
BclI	TGATCA	2 cut(s)	325, 588
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	4 cut(s)	125, 167, 203, 486
BfoI	RGCGCY	1 cut(s)	532
BisI	GCNGC	1 cut(s)	817
BlsI	GCNGC	1 cut(s)	818
Bme18I	GGWCC	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	325
Bpu10I	CCTNAGC	1 cut(s)	319
Bpu14I	TTCGAA	1 cut(s)	659
BpuEI	CTTGAG	2 cut(s)	408, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse118I	RCCGGY	1 cut(s)	804
Bse1I	ACTGG	1 cut(s)	805
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMII	CTCAG	3 cut(s)	88, 333, 627
BseNI	ACTGG	1 cut(s)	805
BseRI	GAGGAG	3 cut(s)	19, 40, 226
BseXI	GCAGC	1 cut(s)	803
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	446, 568, 804
BsiHKAI	GWGCWC	2 cut(s)	234, 812
BsiSI	CCGG	1 cut(s)	805
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	446, 568, 804
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1286I	GDGCHC	2 cut(s)	234, 812
Bsp143I	GATC	4 cut(s)	23, 325, 588, 704
BspACI	CCGC	2 cut(s)	522, 758
BspANI	GGCC	3 cut(s)	446, 568, 804
BspCNI	CTCAG	3 cut(s)	87, 332, 628
BspPI	GGATC	2 cut(s)	18, 712
BspT104I	TTCGAA	1 cut(s)	659
BsrFI	RCCGGY	1 cut(s)	804
BsrI	ACTGG	1 cut(s)	805
BssAI	RCCGGY	1 cut(s)	804
BssMI	GATC	4 cut(s)	23, 325, 588, 704
Bst4CI	ACNGT	1 cut(s)	628
Bst6I	CTCTTC	3 cut(s)	37, 58, 728
BstBI	TTCGAA	1 cut(s)	659
BstDEI	CTNAG	4 cut(s)	74, 319, 636, 641
BstF5I	GGATG	1 cut(s)	616
BstH2I	RGCGCY	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	4 cut(s)	26, 328, 591, 707
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	4 cut(s)	23, 325, 588, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 419, 816
BstNSI	RCATGY	1 cut(s)	758
BstV1I	GCAGC	1 cut(s)	803
BstV2I	GAAGAC	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	446, 568, 804
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	1 cut(s)	153
CfoI	GCGC	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	804
Cfr13I	GGNCC	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	334
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	5 cut(s)	101, 469, 586, 755, 813
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	4 cut(s)	74, 319, 636, 641
DpnI	GATC	4 cut(s)	25, 327, 590, 706
DpnII	GATC	4 cut(s)	23, 325, 588, 704
EaeI	YGGCCR	1 cut(s)	802
Eam1104I	CTCTTC	3 cut(s)	37, 58, 728
EarI	CTCTTC	3 cut(s)	37, 58, 728
Eco47I	GGWCC	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	495
FaeI	CATG	5 cut(s)	104, 472, 589, 758, 816
FalI	AAGNNNNNCTT	2 cut(s)	725, 757
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	5 cut(s)	100, 468, 585, 754, 812
FauNDI	CATATG	1 cut(s)	90
FbaI	TGATCA	2 cut(s)	325, 588
Fnu4HI	GCNGC	1 cut(s)	817
FokI	GGATG	1 cut(s)	623
Fsp4HI	GCNGC	1 cut(s)	817
FspBI	CTAG	4 cut(s)	125, 167, 203, 486
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	1 cut(s)	817
GsuI	CTGGAG	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	532
HaeIII	GGCC	3 cut(s)	446, 568, 804
HapII	CCGG	1 cut(s)	805
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	5 cut(s)	104, 472, 589, 758, 816
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	4 cut(s)	5, 211, 632, 725
HpaII	CCGG	1 cut(s)	805
HphI	GGTGA	2 cut(s)	340, 449
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	4 cut(s)	135, 637, 704, 720
Hpy188III	TCNNGA	2 cut(s)	194, 400
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	486, 508, 781
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4V	TGCA	3 cut(s)	94, 291, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 419, 816
HpyF3I	CTNAG	4 cut(s)	74, 319, 636, 641
Hsp92II	CATG	5 cut(s)	104, 472, 589, 758, 816
HspAI	GCGC	1 cut(s)	529
Ksp22I	TGATCA	2 cut(s)	325, 588
Kzo9I	GATC	4 cut(s)	23, 325, 588, 704
LpnPI	CCDG	8 cut(s)	98, 250, 317, 355, 385, 404, 786, 818
Lsp1109I	GCAGC	1 cut(s)	803
MaeI	CTAG	4 cut(s)	125, 167, 203, 486
MaeIII	GTNAC	2 cut(s)	437, 796
MalI	GATC	4 cut(s)	25, 327, 590, 706
MboI	GATC	4 cut(s)	23, 325, 588, 704
MhlI	GDGCHC	2 cut(s)	234, 812
MluCI	AATT	2 cut(s)	592, 662
MlyI	GAGTC	2 cut(s)	14, 734
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	8 cut(s)	37, 40, 61, 216, 247, 328, 475, 729
MseI	TTAA	3 cut(s)	360, 665, 684
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	323, 331
MspI	CCGG	1 cut(s)	805
MwoI	GCNNNNNNNGC	3 cut(s)	297, 419, 816
NdeI	CATATG	1 cut(s)	90
NdeII	GATC	4 cut(s)	23, 325, 588, 704
NlaIII	CATG	5 cut(s)	104, 472, 589, 758, 816
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	758
NspV	TTCGAA	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	211, 632
PkrI	GCNGC	1 cut(s)	818
PleI	GAGTC	2 cut(s)	13, 733
PpsI	GAGTC	2 cut(s)	13, 733
PpuMI	RGGWCCY	1 cut(s)	495
PshBI	ATTAAT	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	495
PspPPI	RGGWCCY	1 cut(s)	495
PvuII	CAGCTG	2 cut(s)	323, 331
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	360, 665, 684
SatI	GCNGC	1 cut(s)	817
Sau3AI	GATC	4 cut(s)	23, 325, 588, 704
Sau96I	GGNCC	1 cut(s)	495
SchI	GAGTC	2 cut(s)	14, 734
SduI	GDGCHC	2 cut(s)	234, 812
SfuI	TTCGAA	1 cut(s)	659
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	423, 649
SmoI	CTYRAG	2 cut(s)	423, 649
Sse9I	AATT	2 cut(s)	592, 662
SsiI	CCGC	2 cut(s)	522, 758
SspI	AATATT	1 cut(s)	432
SspMI	CTAG	4 cut(s)	125, 167, 203, 486
TaaI	ACNGT	1 cut(s)	628
TaqI	TCGA	1 cut(s)	659
TasI	AATT	2 cut(s)	592, 662
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	211, 632
Tru1I	TTAA	3 cut(s)	360, 665, 684
Tru9I	TTAA	3 cut(s)	360, 665, 684
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	816
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	9 cut(s)	24, 33, 45, 54, 70, 77, 490, 627, 746
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	495
VspI	ATTAAT	1 cut(s)	665
XceI	RCATGY	1 cut(s)	758
XspI	CTAG	4 cut(s)	125, 167, 203, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.