Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

1301938 .. 1303092

Gene Structure 1155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG016500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTTGTTGAGAATGCAATACCATTTATCAATAGCTACCAAAGTTCTCCTCCTCTCTCTCTTTTCTATGAACTTCAATTGTTCAAACACTCAGTCATGGATCAAAGCCGGTTACCATTACACCGGTGATGAATTCCCTGTTTCTGACATAGATTCCACATTGTTCACTCACCTTATATGTGGTTTTGCCTTTATAAACTCTTCCACTTACCAGCTCTCAATCAACTCCTCCACCCAACAAGAATTCTCCACTTTCACAAATGTTGTCAAGCGCAAAAACTCAGAAGTCACGGCCTTGCTATCCATCTGGGGTGGAGGAGAAGATTATTCAGTGTTGTTTTCAGTGCTGAACCAGTCTTCTCACCGGAGATCTTTCATTGAATCTTCAATAACGACAGCTAGACTTTATGAGTTTGATGGGCTAGACCTCACGGGGGCTGTACCAAGAACAAGCATGCACACCACATCTTTGGGAACATTTCTAAATGAGTGGCGTGCTGCGGTGGATTCTGAAGCAAAAAAGTCAGGAAAGTCAGGTTTGCTCTTGACAATGGCACTTCATCATCATATGCAGGTTATGGATACGGTGACTTATCCCATTGACTCAATTAAGAAGAACTTGAATTGGGCTCATCTTGGGGCATATGATTACTATCTTCCTAAAGAGGAAAACTTCACACACCCTCATGCTGCTTTATATGACCCAATAACAAATGGGACTAATACGAATAGTCGTGTTAAGGACTTGATAAGCAGAGGACTACCTGCTAGCAAGCTTGTTTTAGGCTTGCCTTACCATGGTTATGGTTGGACTCTTGTGAATCCCAGCGACAATAATGTTGGTGCAGCGGCATCAGGTCCTGCGGTTACCATAGACGGGTCCATGGCCTATAAGTACATCAAATGGTTCATTAAGACAATTGGATATGGTGCAGTTCCTATGTACAATGACACTTATGTGGTGAATTACTGCACAATTGGGTCAAGTTGGATTAATTTTGATGATGTAGAGGCTATCAAGGCGAAAGTTTCTTACGCTAAGAAGATGGGACTTCTTGGCTACAATGTGTTTCAAGTTGGCAATGATGACAATTGGGTGCTCTCTAGGGCAGCAGGTAGGTTGATATTAGCTTCCAGGTATTTTCGACATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

384

Amino Acids

42.85

Weight (kDa)

8.23

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	45 - 362	5.9e-53	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
Acc36I	ACCTGC	3 cut(s)	562, 772, 1103
AciI	CCGC	3 cut(s)	500, 848, 863
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	2 cut(s)	131, 242
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	3 cut(s)	441, 896, 944
AfiI	CCNNNNNNNGG	3 cut(s)	433, 797, 876
AflIII	ACRYGT	1 cut(s)	1147
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	6 cut(s)	76, 84, 380, 387, 622, 1073
AjnI	CCWGG	1 cut(s)	1133
AleI	CACNNNNGTG	1 cut(s)	956
AluBI	AGCT	5 cut(s)	35, 214, 398, 775, 1130
AluI	AGCT	5 cut(s)	35, 214, 398, 775, 1130
Alw21I	GWGCWC	1 cut(s)	1101
AlwI	GGATC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	860
AoxI	GGCC	2 cut(s)	291, 885
ApeKI	GCWGC	4 cut(s)	497, 689, 845, 1109
ApoI	RAATTY	2 cut(s)	131, 242
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AseI	ATTAAT	1 cut(s)	993
AsiGI	ACCGGT	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	857, 879
AsuHPI	GGTGA	5 cut(s)	137, 161, 353, 598, 973
AsuNHI	GCTAGC	1 cut(s)	767
AvaII	GGWCC	2 cut(s)	857, 879
BanII	GRGCYC	1 cut(s)	631
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	1101
BbvI	GCAGC	4 cut(s)	484, 676, 857, 1121
BccI	CCATC	3 cut(s)	311, 410, 1039
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	1135
BciVI	GTATCC	1 cut(s)	574
BfaI	CTAG	4 cut(s)	399, 422, 768, 1104
BfuAI	ACCTGC	3 cut(s)	562, 772, 1103
BfuI	GTATCC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	5 cut(s)	498, 690, 846, 849, 1110
BlsI	GCNGC	5 cut(s)	499, 691, 847, 850, 1111
Bme1390I	CCNGG	1 cut(s)	1135
Bme18I	GGWCC	2 cut(s)	857, 879
BmgT120I	GGNCC	2 cut(s)	857, 879
BmiI	GGNNCC	1 cut(s)	880
BmrFI	CCNGG	1 cut(s)	1135
BmsI	GCATC	1 cut(s)	860
BmtI	GCTAGC	1 cut(s)	771
BpiI	GAAGAC	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	651
BsaJI	CCNNGG	2 cut(s)	796, 882
BsaWI	WCCGGW	2 cut(s)	122, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	433, 797, 876
Bse118I	RCCGGY	2 cut(s)	107, 122
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	1087
Bse8I	GATNNNNATC	1 cut(s)	651
BseBI	CCWGG	1 cut(s)	1135
BseDI	CCNNGG	2 cut(s)	796, 882
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	3 cut(s)	433, 797, 876
BseMI	GCAATG	1 cut(s)	1087
BseMII	CTCAG	2 cut(s)	104, 294
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	4 cut(s)	38, 41, 217, 330
BseXI	GCAGC	4 cut(s)	484, 676, 857, 1121
BseYI	CCCAGC	1 cut(s)	824
BsgI	GTGCAG	3 cut(s)	864, 951, 955
BshFI	GGCC	2 cut(s)	293, 887
BshTI	ACCGGT	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	1101
BsiSI	CCGG	3 cut(s)	108, 123, 364
BslFI	GGGAC	2 cut(s)	730, 1062
BslI	CCNNNNNNNGG	3 cut(s)	433, 797, 876
BsmFI	GGGAC	2 cut(s)	730, 1062
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	293, 887
Bsp1286I	GDGCHC	2 cut(s)	631, 1101
Bsp1407I	TGTACA	1 cut(s)	942
Bsp143I	GATC	2 cut(s)	99, 368
Bsp19I	CCATGG	2 cut(s)	796, 882
BspACI	CCGC	3 cut(s)	500, 848, 863
BspANI	GGCC	2 cut(s)	293, 887
BspCNI	CTCAG	2 cut(s)	103, 293
BspLI	GGNNCC	1 cut(s)	880
BspMI	ACCTGC	3 cut(s)	562, 772, 1103
BspOI	GCTAGC	1 cut(s)	771
BspPI	GGATC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	1087
BsrFI	RCCGGY	2 cut(s)	107, 122
BsrGI	TGTACA	1 cut(s)	942
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	2 cut(s)	107, 122
BssECI	CCNNGG	2 cut(s)	796, 882
BssMI	GATC	2 cut(s)	99, 368
BssT1I	CCWWGG	2 cut(s)	796, 882
Bst2UI	CCWGG	1 cut(s)	1135
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	942
BstC8I	GCNNGC	5 cut(s)	455, 495, 769, 773, 788
BstDEI	CTNAG	3 cut(s)	90, 280, 1038
BstDSI	CCRYGG	2 cut(s)	796, 882
BstEII	GGTNACC	2 cut(s)	110, 865
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	2 cut(s)	102, 371
BstMBI	GATC	2 cut(s)	99, 368
BstMWI	GCNNNNNNNGC	1 cut(s)	1019
BstNI	CCWGG	1 cut(s)	1135
BstNSI	RCATGY	2 cut(s)	457, 1151
BstPI	GGTNACC	2 cut(s)	110, 865
BstSCI	CCNGG	1 cut(s)	1133
BstV1I	GCAGC	4 cut(s)	484, 676, 857, 1121
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	368
BstXI	CCANNNNNNTGG	2 cut(s)	469, 803
BstYI	RGATCY	1 cut(s)	368
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	2 cut(s)	293, 887
BtgI	CCRYGG	2 cut(s)	796, 882
BtsIMutI	CAGTG	2 cut(s)	336, 348
BveI	ACCTGC	3 cut(s)	562, 772, 1103
Cac8I	GCNNGC	5 cut(s)	455, 495, 769, 773, 788
CaiI	CAGNNNCTG	1 cut(s)	860
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	2 cut(s)	107, 122
Cfr13I	GGNCC	2 cut(s)	857, 879
Csp6I	GTAC	3 cut(s)	440, 895, 943
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	6 cut(s)	96, 454, 686, 797, 883, 1148
CviQI	GTAC	3 cut(s)	440, 895, 943
DdeI	CTNAG	3 cut(s)	90, 280, 1038
DpnI	GATC	2 cut(s)	101, 370
DpnII	GATC	2 cut(s)	99, 368
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	796, 882
Eco24I	GRGCYC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	857, 879
Eco57I	CTGAAG	1 cut(s)	531
Eco91I	GGTNACC	2 cut(s)	110, 865
EcoO109I	RGGNCCY	1 cut(s)	857
EcoO65I	GGTNACC	2 cut(s)	110, 865
EcoRI	GAATTC	2 cut(s)	131, 242
EcoRII	CCWGG	1 cut(s)	1133
EcoT14I	CCWWGG	2 cut(s)	796, 882
EcoT38I	GRGCYC	1 cut(s)	631
ErhI	CCWWGG	2 cut(s)	796, 882
FaeI	CATG	6 cut(s)	99, 457, 689, 800, 886, 1151
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	2 cut(s)	730, 1062
FatI	CATG	6 cut(s)	95, 453, 685, 796, 882, 1147
FauNDI	CATATG	2 cut(s)	567, 643
Fnu4HI	GCNGC	5 cut(s)	498, 690, 846, 849, 1110
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	5 cut(s)	498, 690, 846, 849, 1110
FspBI	CTAG	4 cut(s)	399, 422, 768, 1104
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	5 cut(s)	498, 690, 846, 849, 1110
GsaI	CCCAGC	1 cut(s)	828
HaeIII	GGCC	2 cut(s)	293, 887
HapII	CCGG	3 cut(s)	108, 123, 364
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	6 cut(s)	99, 457, 689, 800, 886, 1151
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	6 cut(s)	152, 380, 506, 602, 811, 820
HpaII	CCGG	3 cut(s)	108, 123, 364
HphI	GGTGA	5 cut(s)	137, 161, 353, 598, 973
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	3 cut(s)	145, 283, 511
Hpy188III	TCNNGA	2 cut(s)	525, 544
Hpy8I	GTNNAC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	6 cut(s)	16, 457, 571, 845, 932, 972
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1019
HpyF3I	CTNAG	3 cut(s)	90, 280, 1038
Hsp92II	CATG	6 cut(s)	99, 457, 689, 800, 886, 1151
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	99, 368
Lsp1109I	GCAGC	4 cut(s)	484, 676, 857, 1121
LweI	GCATC	1 cut(s)	860
MaeI	CTAG	4 cut(s)	399, 422, 768, 1104
MaeIII	GTNAC	4 cut(s)	110, 286, 586, 865
MalI	GATC	2 cut(s)	101, 370
MboI	GATC	2 cut(s)	99, 368
MboII	GAAGA	7 cut(s)	192, 332, 348, 375, 625, 647, 1054
MfeI	CAATTG	4 cut(s)	76, 918, 975, 1090
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	2 cut(s)	631, 1101
MlyI	GAGTC	2 cut(s)	596, 805
MmeI	TCCRAC	2 cut(s)	788, 968
MnlI	CCTC	9 cut(s)	59, 62, 238, 308, 437, 658, 693, 749, 1003
MseI	TTAA	5 cut(s)	609, 738, 912, 993, 1153
MslI	CAYNNNNRTG	3 cut(s)	684, 801, 956
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	3 cut(s)	108, 123, 364
MspR9I	CCNGG	1 cut(s)	1135
MunI	CAATTG	4 cut(s)	76, 918, 975, 1090
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	1135
MwoI	GCNNNNNNNGC	1 cut(s)	1019
NcoI	CCATGG	2 cut(s)	796, 882
NdeI	CATATG	2 cut(s)	567, 643
NdeII	GATC	2 cut(s)	99, 368
NheI	GCTAGC	1 cut(s)	767
NlaIII	CATG	6 cut(s)	99, 457, 689, 800, 886, 1151
NlaIV	GGNNCC	1 cut(s)	880
NmuCI	GTSAC	2 cut(s)	286, 586
NspI	RCATGY	2 cut(s)	457, 1151
OliI	CACNNNNGTG	1 cut(s)	956
PaeI	GCATGC	1 cut(s)	457
PciI	ACATGT	1 cut(s)	1147
PctI	GAATGC	1 cut(s)	18
PfeI	GAWTC	4 cut(s)	152, 380, 506, 820
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	5 cut(s)	499, 691, 847, 850, 1111
PleI	GAGTC	2 cut(s)	596, 805
PpsI	GAGTC	2 cut(s)	596, 805
PpuMI	RGGWCCY	1 cut(s)	857
PscI	ACATGT	1 cut(s)	1147
PshBI	ATTAAT	1 cut(s)	993
PsiI	TTATAA	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	1133
PspEI	GGTNACC	2 cut(s)	110, 865
PspFI	CCCAGC	1 cut(s)	824
PspGI	CCWGG	1 cut(s)	1133
PspN4I	GGNNCC	1 cut(s)	880
PspPI	GGNCC	2 cut(s)	857, 879
PspPPI	RGGWCCY	1 cut(s)	857
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	1 cut(s)	368
RsaI	GTAC	3 cut(s)	441, 896, 944
RsaNI	GTAC	3 cut(s)	440, 895, 943
RseI	CAYNNNNRTG	3 cut(s)	684, 801, 956
SaqAI	TTAA	5 cut(s)	609, 738, 912, 993, 1153
SatI	GCNGC	5 cut(s)	498, 690, 846, 849, 1110
Sau3AI	GATC	2 cut(s)	99, 368
Sau96I	GGNCC	2 cut(s)	857, 879
SchI	GAGTC	2 cut(s)	596, 805
ScrFI	CCNGG	1 cut(s)	1135
SduI	GDGCHC	2 cut(s)	631, 1101
SfaNI	GCATC	1 cut(s)	860
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	2 cut(s)	857, 879
SmiMI	CAYNNNNRTG	3 cut(s)	684, 801, 956
SphI	GCATGC	1 cut(s)	457
SsiI	CCGC	3 cut(s)	500, 848, 863
SspMI	CTAG	4 cut(s)	399, 422, 768, 1104
StyD4I	CCNGG	1 cut(s)	1133
StyI	CCWWGG	2 cut(s)	796, 882
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	1144
TatI	WGTACW	2 cut(s)	894, 942
TauI	GCSGC	1 cut(s)	851
TfiI	GAWTC	4 cut(s)	152, 380, 506, 820
Tru1I	TTAA	5 cut(s)	609, 738, 912, 993, 1153
Tru9I	TTAA	5 cut(s)	609, 738, 912, 993, 1153
TscAI	CASTG	2 cut(s)	336, 348
TseFI	GTSAC	2 cut(s)	286, 586
TseI	GCWGC	4 cut(s)	497, 689, 845, 1109
Tsp45I	GTSAC	2 cut(s)	286, 586
TspDTI	ATGAA	5 cut(s)	83, 144, 364, 548, 898
TspRI	CASTG	2 cut(s)	336, 348
VpaK11BI	GGWCC	2 cut(s)	857, 879
VspI	ATTAAT	1 cut(s)	993
XapI	RAATTY	2 cut(s)	131, 242
XceI	RCATGY	2 cut(s)	457, 1151
XspI	CTAG	4 cut(s)	399, 422, 768, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.