Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

11625197 .. 11625658

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1156600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCATCCAAAAATATCTCCCACGCGATCTTCTTCATCTTCCTTGTTTCTTGTAATTTTTTGTGTTCTTCCGCACAAACTTGGATTCGAGCTGGTTACTGGTACACTGGCAGCGACTTTCCTTTACCGGAGGTAAACTCTGCCTTGTTCACACATCTTATTTATGCTTTTGCCAATGTGAATTCCTCCACCTACCAGCTCTCTATCCCTTCTGCTCATGAACAAAACTTCTCAAGCTTCACCGATATTGTCAAGCGCAAAAACCCATCAATCACAACGCTCCTATCCATATGGAACGGAGAAGCAGCAACAACTCAGCTAATTTTGGGTCAGAGAGCTAACTTTTCAGTCTTGTCTAAAATGCTCGAAAATCCTTCAAATAGAAAGTCTTTCATTGAGTCTTCCATCGATGTGGCAAGACGTTATGGCTTTCAAGGTATAGACAACTCTGGCCTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

17.02

Weight (kDa)

8.64

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	33 - 148	6.8e-16	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	181
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	378, 434
AluBI	AGCT	5 cut(s)	92, 199, 237, 319, 338
AluI	AGCT	5 cut(s)	92, 199, 237, 319, 338
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	111, 305
ApoI	RAATTY	1 cut(s)	181
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AspLEI	GCGC	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	123, 317
BccI	CCATC	2 cut(s)	274, 413
BisI	GCNGC	2 cut(s)	112, 306
BlsI	GCNGC	2 cut(s)	113, 307
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpuEI	CTTGAG	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	454
BsaWI	WCCGGW	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	104, 112
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	2 cut(s)	104, 112
BseXI	GCAGC	2 cut(s)	123, 317
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	453
BshVI	ATCGAT	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	128
BsnI	GGCC	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	453
BspCNI	CTCAG	1 cut(s)	328
BspDI	ATCGAT	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	104, 112
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	123, 317
BstV2I	GAAGAC	1 cut(s)	393
BstXI	CCANNNNNNTGG	1 cut(s)	412
Bsu15I	ATCGAT	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	453
BsuTUI	ATCGAT	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	105
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	258
ClaI	ATCGAT	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	8 cut(s)	92, 199, 237, 319, 338, 429, 453, 459
CviKI_1	RGCY	8 cut(s)	92, 199, 237, 319, 338, 429, 453, 459
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	1 cut(s)	221
FaiI	YATR	6 cut(s)	165, 219, 290, 292, 426, 440
FatI	CATG	1 cut(s)	217
FauNDI	CATATG	1 cut(s)	290
Fnu4HI	GCNGC	2 cut(s)	112, 306
Fsp4HI	GCNGC	2 cut(s)	112, 306
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	2 cut(s)	112, 306
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	2 cut(s)	85, 398
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	3 cut(s)	105, 136, 150
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	3 cut(s)	105, 136, 150
HpyAV	CCTTC	2 cut(s)	219, 384
HpyCH4IV	ACGT	1 cut(s)	421
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	285
LpnPI	CCDG	6 cut(s)	78, 85, 93, 141, 209, 435
Lsp1109I	GCAGC	2 cut(s)	123, 317
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	5 cut(s)	22, 25, 31, 60, 393
MluCI	AATT	3 cut(s)	55, 181, 321
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	2 cut(s)	124, 196
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	290
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	113, 307
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	410
SatI	GCNGC	2 cut(s)	112, 306
Sau3AI	GATC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	407
SetI	ASST	9 cut(s)	94, 135, 194, 201, 239, 321, 340, 424, 439
SfaNI	GCATC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	3 cut(s)	55, 181, 321
SsiI	CCGC	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	454
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	3 cut(s)	88, 366, 408
TasI	AATT	3 cut(s)	55, 181, 321
TfiI	GAWTC	1 cut(s)	85
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	2 cut(s)	111, 305
TspDTI	ATGAA	3 cut(s)	25, 234, 382
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.