Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012864

Physical Location & Seq

Genomic Coordinates Reverse (-)

6099544 .. 6105694

Gene Structure 6151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07401.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGGTGGTGGAACGTACCTCATTCCACAGACCAAAATTCGGAGCCCTATTGCAATCCGACCCGAACATACCTACCCCAAATATGAACGACAACAACAACAACAGCGTACGTAGCTCAACCACGAGCCCTGGTTACTACGACAACAGCAGCAACAACAACGTGTGCAGCTCAGCCACGAGCCCCGGTTGTTACGACAACAACCCCTTCAGCTCCGCTGCCAGTCCCGCCTACGCACGTGCCATGTCCGCCAGCCCCGCCAGTTTCTACGACAACAACAACAACAACAACAACGTGAGGGGCAGCAGTGGCAATTCAACTCCATACGCCATGTCGCCGTGGACGCAAGCGTCGCCCTACACCAAGTCTCCGTGGATAACGCCGTCGCCGTTAAATCCATTGTTGGACGAGAGGAACTTGCCTGAGAGCGGACTTGTTGGTTCGTTGGTACGAGAAGAAGGGCATATATATTCGCTAGCGGTGTGCGGGGACTTGTTGTATACCGGTTCGGATAGTAAGAACATCCGGGTCTGGAGGAACTTGAAGGAGTTCACCGGGTTCAAATCCAACAGCGGGTTGGTGAAGACCATTGTGATTTGTGGAGAGAGGATATTCACGGGCCACCAAGATGGAAAAATCCGGGTTTGGAAAGTTTCGCAGAAAAAGGCGAGCCTTCATAAACGGGTCGGGTCATTGCCGACGTTGAAAGACTTTCTCCGGAAATCCATGAACCCGAAGAATTACGTAGAGGTCAGACGCCACCGCAACGTGGTGAGGATCAGACACTTTGACGCCGTCTCGTGTATGAGCTTGAACGAAGAATTAGGCCTCTTATACTCTGGTTCATGGGACAAGACAGTAAAGGTTTGGAGAATTGCCGATTCCAAGTGTTTGGAGTCCATATCGGCTCATGATGACGCCGTGAACTCGGTGGTCGTCGGTTTTGATTCGTTAGTGTTCACCGGCTCGGCGGACGGGACTGTAAAAGTGTGGAGGAGAGAGTTACAAGGCAAAGGGTCGACGCATTTCTTGGTGCAGACATTGTTGAAGCAAGAGAACGCGGTTACGGCATTGGCGGTGAACCAATCGTCAGCGATCGTATACTGCGGGTCGTCGGATGGGAACGTCAACTACTGGGAACGCAAGAAGCATCTTACGCACGGTGGGGTCCTCCGCGGCCACAGGCTCGCCGTGCTCTGCCTCGCCACGGCCGGGAACTTGGTCTTCAGCGGCTCGGCCGACAAGAACATTTGCGTGTGGAGGAGGGAAATTGGCCAGGGAGGAGCGCATACGTGCCTTTCGGTCCTGACCGGCCACTTAGGGCCGGTGAAGTGCCTGACCGTGGAGGAAGACCACTGCAGCTCCGAGGACAAAACCGACCAGAAATGGATCGTGTACAGTGGGAGCTTGGATAGGTCGGTGAAGGTGTGGCGGGTTTCGGAGCAAGCACCGGACTTGAGGCAGCTGTTGTTGTCGGAGAAGGATGATTCTTCTAGGCCGGACCTGAGTAACTATTATTTATCTAGCACTACAAGACGATGTCTGTCTGTCTTTCCGGTGGACGGTGGTCCCTTCAATAACGAGCCAAAAAGCTTCAGACGAAGCTGCAGGGCACCGACCGATGAAGAGTTAAGTGGTGGTGGTGGTCCTGGGAGGAGCCTTCGTATAAAGGCTATAAGTAAAGAAGAAGCAGAATTGTTCGTATGCTTGGAAGGGCATTCTGGATGCCAGACCTCTAATTATGAAATGTATGCGATGGATTGTTGGCAATGGGACAATGAAATAGCTAACCATGTCTTTGGCTATTGTGACTTAACAAAAGAAGTTTGGAATCTAATAGGTGTTCACCATTCTGTTGATTGGGAAAATGGGTTCCCCAACGACGGCAGTGATGGCTCTAAATTTGTTGCTAGAATTAGAGGGTCTTCCTCTCTCTCAGGTGATCTTGATGATGGAGGTGGTGGGGTTTTCCTCCGTGGTTTCTCTGCCTCTGTGATGTGCGGCAACACATCTGGTGTTGTGTATGAAAGAGAGGTTTCTAGTTCGATGGTTACCGGAGGGACGTTGCTATTTTGGGATGCGGAGGCGGATCCGTTCCTATCTAGTGCCTTTGCGGAAGTGCCAATGATGAAGATTGAGGACGACGATGCTGCGGGGATGCATGGCGGCGCTGCAAGGATGCTTGACTGCGCTGGGGGTTGCTTGATGGCACTGCGGGGTTTCTTGACGGTGATGTACGACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

748

Amino Acids

81.76

Weight (kDa)

6.56

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_SCAP	PF24017	150 - 381	2e-12	SCAP Beta-propeller
WD40_Gbeta	PF25391	256 - 419	9.9e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	257 - 331	3.3e-10	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	258 - 333	8.5e-08	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	260 - 332	8.7e-14	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	260 - 446	1.9e-16	THOC3 beta-propeller domain
WDR55	PF24796	261 - 415	8.2e-11	WDR55
WD40_CDC20-Fz	PF24807	261 - 419	8.2e-11	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	261 - 340	2.4e-06	TEP-1 second beta-propeller
WD40_Prp19	PF24814	264 - 381	4e-14	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	265 - 381	7.7e-13	WDR3 second beta-propeller domain
NBCH_WD40	PF20426	266 - 331	1.2e-07	Neurobeachin beta propeller domain
Beta-prop_EML_2	PF23414	274 - 424	1.1e-09	Echinoderm microtubule-associated protein second beta-propeller
WD40	PF00400	295 - 330	4.6e-06	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	343 - 481	1.5e-13	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	343 - 481	4.2e-16	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	347 - 483	5.3e-08	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	351 - 448	4.4e-08	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	355 - 491	7.7e-10	TEP-1 second beta-propeller
WD40_Prp19	PF24814	398 - 482	4.5e-06	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49450 AT3G18950
fragaria_vesca	FvH4_2g07401
malus_domestica	MD00G1129400.v1.1 MD10G1086000.v1.1
prunus_persica	Prupe.8G110400_v2.0.a1
pyrus_communis	pycom10g06780
rosa_chinensis	RchiOBHm_Chr6g0260861
rosa_laevigata	RLG00000014479
rosa_multiflora	Rmu_sc0000588.1_g000049 Rmu_sc0005980.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207480
rosa_samantha	Rh6AG112700 Rh6BG106500 Rh6CG103800 Rh6DG094700
rosa_wichuraiana	Rw6G009560 Rw6G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	1609
AccBSI	CCGCTC	1 cut(s)	426
AccI	GTMKAC	3 cut(s)	497, 1016, 1098
AccII	CGCG	2 cut(s)	1058, 1173
AccIII	TCCGGA	1 cut(s)	714
AclWI	GGATC	4 cut(s)	782, 1394, 2081, 2094
AcoI	YGGCCR	5 cut(s)	1174, 1206, 1233, 1270, 1309
AcsI	RAATTY	2 cut(s)	35, 1898
AcuI	CTGAAG	3 cut(s)	190, 1207, 1576
AcvI	CACGTG	1 cut(s)	236
AcyI	GRCGYC	3 cut(s)	754, 789, 915
AfaI	GTAC	5 cut(s)	16, 108, 447, 1394, 2234
AfiI	CCNNNNNNNGG	9 cut(s)	38, 425, 570, 766, 1204, 1209, 1339, 1559, 1880
AflIII	ACRYGT	1 cut(s)	159
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	7 cut(s)	315, 541, 559, 703, 811, 1045, 1573
AjnI	CCWGG	3 cut(s)	127, 1272, 1645
AloI	GAACNNNNNNTCC	2 cut(s)	1853, 1885
Alw21I	GWGCWC	1 cut(s)	1194
Alw26I	GTCTC	2 cut(s)	369, 799
AlwI	GGATC	4 cut(s)	782, 1394, 2081, 2094
Aor13HI	TCCGGA	1 cut(s)	714
AoxI	GGCC	9 cut(s)	616, 823, 1174, 1206, 1233, 1270, 1309, 1319, 1493
ApeKI	GCWGC	9 cut(s)	147, 165, 215, 300, 1356, 1459, 1602, 2147, 2168
ApoI	RAATTY	2 cut(s)	35, 1898
AsiGI	ACCGGT	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	545
AspLEI	GCGC	3 cut(s)	1285, 2168, 2189
AspS9I	GGNCC	7 cut(s)	616, 1165, 1300, 1319, 1498, 1565, 1643
AsuC2I	CCSGG	5 cut(s)	183, 524, 553, 638, 1210
AsuNHI	GCTAGC	1 cut(s)	472
AvaII	GGWCC	5 cut(s)	1165, 1300, 1498, 1565, 1643
BaeGI	GKGCMC	1 cut(s)	1612
BalI	TGGCCA	1 cut(s)	1272
BamHI	GGATCC	1 cut(s)	2086
BanI	GGYRCC	1 cut(s)	1609
BanII	GRGCYC	3 cut(s)	46, 128, 182
BauI	CACGAG	3 cut(s)	121, 175, 796
BbrPI	CACGTG	1 cut(s)	236
BbsI	GAAGAC	4 cut(s)	587, 1213, 1353, 1914
Bbv12I	GWGCWC	1 cut(s)	1194
BbvI	GCAGC	9 cut(s)	159, 177, 202, 312, 1368, 1471, 1589, 2134, 2155
BccI	CCATC	7 cut(s)	620, 1109, 1747, 1883, 1943, 2038, 2197
BceAI	ACGGC	9 cut(s)	319, 364, 370, 776, 902, 1080, 1172, 1221, 1897
BcgI	CGANNNNNNTGC	2 cut(s)	2129, 2163
BciT130I	CCWGG	3 cut(s)	129, 1274, 1647
BcnI	CCSGG	5 cut(s)	183, 524, 553, 638, 1210
BcoDI	GTCTC	2 cut(s)	369, 799
BfaI	CTAG	7 cut(s)	473, 1491, 1521, 1908, 2037, 2100, 2242
BfmI	CTRYAG	2 cut(s)	1354, 1603
BfoI	RGCGCY	1 cut(s)	2169
BlpI	GCTNAGC	1 cut(s)	169
Bme1390I	CCNGG	8 cut(s)	129, 183, 524, 553, 638, 1210, 1274, 1647
Bme18I	GGWCC	5 cut(s)	1165, 1300, 1498, 1565, 1643
BmgT120I	GGNCC	7 cut(s)	616, 1165, 1300, 1319, 1498, 1565, 1643
BmiI	GGNNCC	7 cut(s)	43, 1166, 1567, 1611, 1655, 1871, 2088
BmrFI	CCNGG	8 cut(s)	129, 183, 524, 553, 638, 1210, 1274, 1647
BmrI	ACTGGG	1 cut(s)	1141
BmsI	GCATC	6 cut(s)	1156, 1712, 2065, 2134, 2145, 2166
BmtI	GCTAGC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	1141
BoxI	GACNNNNGTC	1 cut(s)	1563
BpiI	GAAGAC	4 cut(s)	587, 1213, 1353, 1914
BpmI	CTGGAG	1 cut(s)	550
Bpu1102I	GCTNAGC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	1474
BpuMI	CCSGG	5 cut(s)	183, 524, 553, 638, 1210
BsaAI	YACGTR	4 cut(s)	110, 236, 742, 1290
BsaHI	GRCGYC	3 cut(s)	754, 789, 915
BsaWI	WCCGGW	5 cut(s)	500, 714, 1447, 1552, 2051
BsaXI	ACNNNNNCTCC	6 cut(s)	349, 379, 1343, 1373, 1645, 1675
Bsc4I	CCNNNNNNNGG	9 cut(s)	38, 425, 570, 766, 1204, 1209, 1339, 1559, 1880
Bse118I	RCCGGY	4 cut(s)	500, 959, 1307, 1321
Bse1I	ACTGG	3 cut(s)	219, 258, 1136
Bse3DI	GCAATG	2 cut(s)	689, 1772
BseAI	TCCGGA	1 cut(s)	714
BseBI	CCWGG	3 cut(s)	129, 1274, 1647
BseGI	GGATG	7 cut(s)	519, 1120, 1486, 1727, 2080, 2160, 2181
BseLI	CCNNNNNNNGG	9 cut(s)	38, 425, 570, 766, 1204, 1209, 1339, 1559, 1880
BseMI	GCAATG	2 cut(s)	689, 1772
BseMII	CTCAG	4 cut(s)	183, 411, 1493, 1947
BseNI	ACTGG	3 cut(s)	219, 258, 1136
BseRI	GAGGAG	4 cut(s)	1006, 1273, 1293, 1666
BseSI	GKGCMC	1 cut(s)	1612
BseX3I	CGGCCG	2 cut(s)	1206, 1233
BseXI	GCAGC	9 cut(s)	159, 177, 202, 312, 1368, 1471, 1589, 2134, 2155
BseYI	CCCAGC	1 cut(s)	2189
BsgI	GTGCAG	2 cut(s)	184, 1052
Bsh1236I	CGCG	2 cut(s)	1058, 1173
Bsh1285I	CGRYCG	4 cut(s)	1095, 1209, 1236, 1617
BshFI	GGCC	9 cut(s)	618, 825, 1176, 1208, 1235, 1272, 1311, 1321, 1495
BshNI	GGYRCC	1 cut(s)	1609
BshTI	ACCGGT	1 cut(s)	500
BsiEI	CGRYCG	4 cut(s)	1095, 1209, 1236, 1617
BsiHKAI	GWGCWC	1 cut(s)	1194
BsiWI	CGTACG	1 cut(s)	106
BslFI	GGGAC	7 cut(s)	207, 500, 860, 988, 1551, 1784, 2071
BslI	CCNNNNNNNGG	9 cut(s)	38, 425, 570, 766, 1204, 1209, 1339, 1559, 1880
BsmAI	GTCTC	2 cut(s)	369, 799
BsmBI	CGTCTC	1 cut(s)	799
BsmFI	GGGAC	7 cut(s)	207, 500, 860, 988, 1551, 1784, 2071
BsmI	GAATGC	1 cut(s)	1714
BsnI	GGCC	9 cut(s)	618, 825, 1176, 1208, 1235, 1272, 1311, 1321, 1495
Bsp1286I	GDGCHC	5 cut(s)	46, 128, 182, 1194, 1612
Bsp13I	TCCGGA	1 cut(s)	714
Bsp1407I	TGTACA	1 cut(s)	1392
Bsp143I	GATC	5 cut(s)	774, 1092, 1386, 1939, 2086
Bsp1720I	GCTNAGC	1 cut(s)	169
BspANI	GGCC	9 cut(s)	618, 825, 1176, 1208, 1235, 1272, 1311, 1321, 1495
BspCNI	CTCAG	4 cut(s)	182, 412, 1494, 1946
BspEI	TCCGGA	1 cut(s)	714
BspFNI	CGCG	2 cut(s)	1058, 1173
BspHI	TCATGA	1 cut(s)	907
BspLI	GGNNCC	7 cut(s)	43, 1166, 1567, 1611, 1655, 1871, 2088
BspMAI	CTGCAG	2 cut(s)	1358, 1607
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	4 cut(s)	782, 1394, 2081, 2094
BspT107I	GGYRCC	1 cut(s)	1609
BsrBI	CCGCTC	1 cut(s)	426
BsrDI	GCAATG	2 cut(s)	689, 1772
BsrFI	RCCGGY	4 cut(s)	500, 959, 1307, 1321
BsrGI	TGTACA	1 cut(s)	1392
BsrI	ACTGG	3 cut(s)	219, 258, 1136
BssAI	RCCGGY	4 cut(s)	500, 959, 1307, 1321
BssMI	GATC	5 cut(s)	774, 1092, 1386, 1939, 2086
BssNAI	GTATAC	2 cut(s)	498, 1099
BssNI	GRCGYC	3 cut(s)	754, 789, 915
BssSI	CACGAG	3 cut(s)	121, 175, 796
Bst1107I	GTATAC	2 cut(s)	498, 1099
Bst2BI	CACGAG	3 cut(s)	121, 175, 796
Bst2UI	CCWGG	3 cut(s)	129, 1274, 1647
Bst4CI	ACNGT	7 cut(s)	856, 979, 1160, 1339, 1397, 1562, 2227
Bst6I	CTCTTC	1 cut(s)	1617
BstACI	GRCGYC	3 cut(s)	754, 789, 915
BstAUI	TGTACA	1 cut(s)	1392
BstBAI	YACGTR	4 cut(s)	110, 236, 742, 1290
BstC8I	GCNNGC	6 cut(s)	250, 345, 474, 667, 1185, 1443
BstDEI	CTNAG	5 cut(s)	169, 420, 1315, 1502, 1933
BstDSI	CCRYGG	6 cut(s)	335, 368, 1171, 1203, 1338, 1972
BstEII	GGTNACC	1 cut(s)	2047
BstF5I	GGATG	7 cut(s)	519, 1120, 1486, 1727, 2080, 2160, 2181
BstFNI	CGCG	2 cut(s)	1058, 1173
BstH2I	RGCGCY	1 cut(s)	2169
BstHHI	GCGC	3 cut(s)	1285, 2168, 2189
BstKTI	GATC	5 cut(s)	777, 1095, 1389, 1942, 2089
BstMAI	GTCTC	2 cut(s)	369, 799
BstMBI	GATC	5 cut(s)	774, 1092, 1386, 1939, 2086
BstMCI	CGRYCG	4 cut(s)	1095, 1209, 1236, 1617
BstNI	CCWGG	3 cut(s)	129, 1274, 1647
BstPAI	GACNNNNGTC	1 cut(s)	1563
BstPI	GGTNACC	1 cut(s)	2047
BstSCI	CCNGG	8 cut(s)	127, 181, 522, 551, 636, 1208, 1272, 1645
BstSFI	CTRYAG	2 cut(s)	1354, 1603
BstSLI	GKGCMC	1 cut(s)	1612
BstSNI	TACGTA	2 cut(s)	110, 742
BstUI	CGCG	2 cut(s)	1058, 1173
BstV1I	GCAGC	9 cut(s)	159, 177, 202, 312, 1368, 1471, 1589, 2134, 2155
BstV2I	GAAGAC	4 cut(s)	587, 1213, 1353, 1914
BstX2I	RGATCY	1 cut(s)	2086
BstXI	CCANNNNNNTGG	3 cut(s)	626, 889, 1796
BstYI	RGATCY	1 cut(s)	2086
BstZ17I	GTATAC	2 cut(s)	498, 1099
BstZI	CGGCCG	2 cut(s)	1206, 1233
BsuRI	GGCC	9 cut(s)	618, 825, 1176, 1208, 1235, 1272, 1311, 1321, 1495
BtgI	CCRYGG	6 cut(s)	335, 368, 1171, 1203, 1338, 1972
BtgZI	GCGATG	1 cut(s)	1766
BtsCI	GGATG	7 cut(s)	519, 1120, 1486, 1727, 2080, 2160, 2181
BtsI	GCAGTG	4 cut(s)	310, 1351, 1891, 2207
BtsIMutI	CAGTG	5 cut(s)	310, 1351, 1402, 1891, 2207
Cac8I	GCNNGC	6 cut(s)	250, 345, 474, 667, 1185, 1443
CciI	TCATGA	1 cut(s)	907
CfoI	GCGC	3 cut(s)	1285, 2168, 2189
Cfr10I	RCCGGY	4 cut(s)	500, 959, 1307, 1321
Cfr13I	GGNCC	7 cut(s)	616, 1165, 1300, 1319, 1498, 1565, 1643
Cfr42I	CCGCGG	1 cut(s)	1174
CseI	GACGC	6 cut(s)	336, 349, 762, 797, 923, 1027
Csp6I	GTAC	5 cut(s)	15, 107, 446, 1393, 2233
CspAI	ACCGGT	1 cut(s)	500
CviAII	CATG	7 cut(s)	241, 328, 724, 843, 908, 1790, 2159
CviQI	GTAC	5 cut(s)	15, 107, 446, 1393, 2233
DdeI	CTNAG	5 cut(s)	169, 420, 1315, 1502, 1933
DpnI	GATC	5 cut(s)	776, 1094, 1388, 1941, 2088
DpnII	GATC	5 cut(s)	774, 1092, 1386, 1939, 2086
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	5 cut(s)	1174, 1206, 1233, 1270, 1309
EagI	CGGCCG	2 cut(s)	1206, 1233
Eam1104I	CTCTTC	1 cut(s)	1617
EarI	CTCTTC	1 cut(s)	1617
EciI	GGCGGA	3 cut(s)	235, 983, 2099
EclXI	CGGCCG	2 cut(s)	1206, 1233
Eco105I	TACGTA	2 cut(s)	110, 742
Eco147I	AGGCCT	1 cut(s)	825
Eco24I	GRGCYC	3 cut(s)	46, 128, 182
Eco47I	GGWCC	5 cut(s)	1165, 1300, 1498, 1565, 1643
Eco52I	CGGCCG	2 cut(s)	1206, 1233
Eco57I	CTGAAG	3 cut(s)	190, 1207, 1576
Eco72I	CACGTG	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	2047
EcoO109I	RGGNCCY	1 cut(s)	1165
EcoO65I	GGTNACC	1 cut(s)	2047
EcoRII	CCWGG	3 cut(s)	127, 1272, 1645
EcoT22I	ATGCAT	1 cut(s)	2160
EcoT38I	GRGCYC	3 cut(s)	46, 128, 182
Esp3I	CGTCTC	1 cut(s)	799
FaeI	CATG	7 cut(s)	244, 331, 727, 846, 911, 1793, 2162
FaqI	GGGAC	7 cut(s)	207, 500, 860, 988, 1551, 1784, 2071
FatI	CATG	7 cut(s)	240, 327, 723, 842, 907, 1789, 2158
FauI	CCCGC	8 cut(s)	232, 262, 476, 563, 1097, 1422, 2143, 2205
FblI	GTMKAC	3 cut(s)	497, 1016, 1098
FokI	GGATG	7 cut(s)	506, 1127, 1493, 1734, 2087, 2167, 2188
FriOI	GRGCYC	3 cut(s)	46, 128, 182
FspBI	CTAG	7 cut(s)	473, 1491, 1521, 1908, 2037, 2100, 2242
GlaI	GCGC	3 cut(s)	1284, 2167, 2188
GsaI	CCCAGC	1 cut(s)	2193
GsuI	CTGGAG	1 cut(s)	550
HaeII	RGCGCY	1 cut(s)	2169
HaeIII	GGCC	9 cut(s)	618, 825, 1176, 1208, 1235, 1272, 1311, 1321, 1495
HgaI	GACGC	6 cut(s)	336, 349, 762, 797, 923, 1027
HhaI	GCGC	3 cut(s)	1285, 2168, 2189
Hin1I	GRCGYC	3 cut(s)	754, 789, 915
Hin1II	CATG	7 cut(s)	244, 331, 727, 846, 911, 1793, 2162
Hin6I	GCGC	3 cut(s)	1283, 2166, 2187
HinP1I	GCGC	3 cut(s)	1283, 2166, 2187
HincII	GTYRAC	2 cut(s)	1017, 1126
HindII	GTYRAC	2 cut(s)	1017, 1126
HindIII	AAGCTT	1 cut(s)	1588
HinfI	GANTC	5 cut(s)	878, 893, 944, 1484, 1828
Hpy188III	TCNNGA	7 cut(s)	529, 715, 908, 1303, 1719, 1943, 2221
Hpy99I	CGWCG	8 cut(s)	352, 385, 700, 938, 1021, 1114, 1883, 2144
HpyAV	CCTTC	9 cut(s)	214, 449, 535, 680, 1414, 1471, 1579, 1667, 1703
HpyCH4III	ACNGT	7 cut(s)	856, 979, 1160, 1339, 1397, 1562, 2227
HpyCH4V	TGCA	7 cut(s)	52, 165, 1033, 1356, 1605, 2158, 2171
HpyF3I	CTNAG	5 cut(s)	169, 420, 1315, 1502, 1933
Hsp92I	GRCGYC	3 cut(s)	754, 789, 915
Hsp92II	CATG	7 cut(s)	244, 331, 727, 846, 911, 1793, 2162
HspAI	GCGC	3 cut(s)	1283, 2166, 2187
Kpn2I	TCCGGA	1 cut(s)	714
KspI	CCGCGG	1 cut(s)	1174
Kzo9I	GATC	5 cut(s)	774, 1092, 1386, 1939, 2086
LmnI	GCTCC	7 cut(s)	41, 215, 1280, 1364, 1401, 1438, 1653
Lsp1109I	GCAGC	9 cut(s)	159, 177, 202, 312, 1368, 1471, 1589, 2134, 2155
LweI	GCATC	6 cut(s)	1156, 1712, 2065, 2134, 2145, 2166
MaeI	CTAG	7 cut(s)	473, 1491, 1521, 1908, 2037, 2100, 2242
MaeIII	GTNAC	7 cut(s)	131, 188, 999, 1060, 1505, 1805, 2047
MalI	GATC	5 cut(s)	776, 1094, 1388, 1941, 2088
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	5 cut(s)	774, 1092, 1386, 1939, 2086
MflI	RGATCY	1 cut(s)	2086
MhlI	GDGCHC	5 cut(s)	46, 128, 182, 1194, 1612
MlsI	TGGCCA	1 cut(s)	1272
MluNI	TGGCCA	1 cut(s)	1272
MlyI	GAGTC	1 cut(s)	902
MmeI	TCCRAC	5 cut(s)	81, 381, 588, 1092, 1452
Mox20I	TGGCCA	1 cut(s)	1272
Mph1103I	ATGCAT	1 cut(s)	2160
MroI	TCCGGA	1 cut(s)	714
MroXI	GAANNNNTTC	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	1272
MseI	TTAA	3 cut(s)	389, 1628, 1811
MslI	CAYNNNNRTG	2 cut(s)	624, 1250
Msp20I	TGGCCA	1 cut(s)	1272
MspA1I	CMGCKG	5 cut(s)	215, 570, 1173, 1227, 1462
MspR9I	CCNGG	8 cut(s)	129, 183, 524, 553, 638, 1210, 1274, 1647
Mva1269I	GAATGC	1 cut(s)	1714
MvaI	CCWGG	3 cut(s)	129, 1274, 1647
MvnI	CGCG	2 cut(s)	1058, 1173
NciI	CCSGG	5 cut(s)	183, 524, 553, 638, 1210
NdeII	GATC	5 cut(s)	774, 1092, 1386, 1939, 2086
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	7 cut(s)	244, 331, 727, 846, 911, 1793, 2162
NlaIV	GGNNCC	7 cut(s)	43, 1166, 1567, 1611, 1655, 1871, 2088
NmeAIII	GCCGAG	2 cut(s)	944, 1211
NmuCI	GTSAC	1 cut(s)	1805
NsiI	ATGCAT	1 cut(s)	2160
PagI	TCATGA	1 cut(s)	907
PceI	AGGCCT	1 cut(s)	825
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PctI	GAATGC	1 cut(s)	1714
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	4 cut(s)	878, 944, 1484, 1828
Pfl23II	CGTACG	1 cut(s)	106
PflFI	GACNNNGTC	2 cut(s)	791, 1536
PinAI	ACCGGT	1 cut(s)	500
Ple19I	CGATCG	1 cut(s)	1095
PleI	GAGTC	1 cut(s)	901
PmaCI	CACGTG	1 cut(s)	236
PmlI	CACGTG	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	901
Ppu21I	YACGTR	4 cut(s)	110, 236, 742, 1290
PpuMI	RGGWCCY	1 cut(s)	1165
PshAI	GACNNNNGTC	1 cut(s)	1563
Psp5II	RGGWCCY	1 cut(s)	1165
Psp6I	CCWGG	3 cut(s)	127, 1272, 1645
PspCI	CACGTG	1 cut(s)	236
PspEI	GGTNACC	1 cut(s)	2047
PspFI	CCCAGC	1 cut(s)	2189
PspGI	CCWGG	3 cut(s)	127, 1272, 1645
PspLI	CGTACG	1 cut(s)	106
PspN4I	GGNNCC	7 cut(s)	43, 1166, 1567, 1611, 1655, 1871, 2088
PspPI	GGNCC	7 cut(s)	616, 1165, 1300, 1319, 1498, 1565, 1643
PspPPI	RGGWCCY	1 cut(s)	1165
PsrI	GAACNNNNNNTAC	2 cut(s)	1112, 1144
PstI	CTGCAG	2 cut(s)	1358, 1607
PsuI	RGATCY	1 cut(s)	2086
PsyI	GACNNNGTC	2 cut(s)	791, 1536
PvuI	CGATCG	1 cut(s)	1095
PvuII	CAGCTG	1 cut(s)	1462
RsaI	GTAC	5 cut(s)	16, 108, 447, 1394, 2234
RsaNI	GTAC	5 cut(s)	15, 107, 446, 1393, 2233
RseI	CAYNNNNRTG	2 cut(s)	624, 1250
SacII	CCGCGG	1 cut(s)	1174
SalI	GTCGAC	1 cut(s)	1015
SaqAI	TTAA	3 cut(s)	389, 1628, 1811
Sau3AI	GATC	5 cut(s)	774, 1092, 1386, 1939, 2086
Sau96I	GGNCC	7 cut(s)	616, 1165, 1300, 1319, 1498, 1565, 1643
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	8 cut(s)	129, 183, 524, 553, 638, 1210, 1274, 1647
SduI	GDGCHC	5 cut(s)	46, 128, 182, 1194, 1612
SfaNI	GCATC	6 cut(s)	1156, 1712, 2065, 2134, 2145, 2166
SfcI	CTRYAG	2 cut(s)	1354, 1603
Sfr303I	CCGCGG	1 cut(s)	1174
SgrBI	CCGCGG	1 cut(s)	1174
SinI	GGWCC	5 cut(s)	1165, 1300, 1498, 1565, 1643
SmiMI	CAYNNNNRTG	2 cut(s)	624, 1250
SmlI	CTYRAG	1 cut(s)	1453
SmoI	CTYRAG	1 cut(s)	1453
SnaBI	TACGTA	2 cut(s)	110, 742
SseBI	AGGCCT	1 cut(s)	825
SspMI	CTAG	7 cut(s)	473, 1491, 1521, 1908, 2037, 2100, 2242
StuI	AGGCCT	1 cut(s)	825
StyD4I	CCNGG	8 cut(s)	127, 181, 522, 551, 636, 1208, 1272, 1645
TaaI	ACNGT	7 cut(s)	856, 979, 1160, 1339, 1397, 1562, 2227
TaqI	TCGA	2 cut(s)	1016, 2042
TaqII	GACCGA	2 cut(s)	1288, 1631
TatI	WGTACW	1 cut(s)	1392
TauI	GCSGC	4 cut(s)	1176, 1230, 2001, 2166
TfiI	GAWTC	4 cut(s)	878, 944, 1484, 1828
Tru1I	TTAA	3 cut(s)	389, 1628, 1811
Tru9I	TTAA	3 cut(s)	389, 1628, 1811
TscAI	CASTG	5 cut(s)	310, 1358, 1402, 1891, 2214
TseFI	GTSAC	1 cut(s)	1805
TseI	GCWGC	9 cut(s)	147, 165, 215, 300, 1356, 1459, 1602, 2147, 2168
Tsp45I	GTSAC	1 cut(s)	1805
TspDTI	ATGAA	9 cut(s)	98, 662, 740, 831, 1635, 1755, 1791, 2037, 2141
TspGWI	ACGGA	3 cut(s)	357, 1961, 2079
TspRI	CASTG	5 cut(s)	310, 1358, 1402, 1891, 2214
Tth111I	GACNNNGTC	2 cut(s)	791, 1536
VpaK11BI	GGWCC	5 cut(s)	1165, 1300, 1498, 1565, 1643
XapI	RAATTY	2 cut(s)	35, 1898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XmiI	GTMKAC	3 cut(s)	497, 1016, 1098
XmnI	GAANNNNTTC	1 cut(s)	545
XspI	CTAG	7 cut(s)	473, 1491, 1521, 1908, 2037, 2100, 2242
Zsp2I	ATGCAT	1 cut(s)	2160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.