Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012864

Physical Location & Seq

Genomic Coordinates Forward (+)

27762615 .. 27764057

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1129400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGAGAAACGAAAGAGGAGGAGGCGCCATGGTAGCAGAACGCAATGCCCTCCACCCCAACAAGCCAAAATTCGGAGCCATTTTGCATTCCTCCGACCCATCTTTACCGTCTCCGACAACTGCCAACAAACATACCAGCAAAAACGACCATAGCCACCATAATGATTACTCAACACACCGTAGCAGTGCCTCGGCGACAAGTCCTGGATACTACGACAATTGTACTCAGGGCAGCAGCACCGAGGGTTCACCCTATGTCATGTCGCCATGGAACCCGGCAACAGCGTCACCCTACAATAAGTCACCGTGGATAACACCGTCGCCATTGAATCCGCTGGACGAGAACTTCCCCTTAAACGGACTTATTGGGTCATTAATCCGGGAAGAAGGCCACATATACTCGCTCGCTATCAAAGGAGACTTGCTATACACTGGGTCCGATAGCAGGAACATACGTGTCTGGAAGAACTTGAAGGATTTTACAGGTTTCAAATCAAAGAGCGGGTTGGTCAAAGCCATTGTGATTTCCGGTGAGAGGATATTTACCGGTCATCAGGATGGTAAGATCCGAGTCTGGAAGGTTTCTCCGAAAAATCCAAGCAATCACAGACGGGTCGGAAGCTTGCCTACTATGAAAGATTTTATTCGGAGCTCTATGAACCCAAAAAACTATGTGGAGGTCCGTAGACACCGCAACGTTGTTCGAATCAGACACTTTGATGCGGTGTCTTGCATGAGCATGAACGAAGAACAAGGACTTCTTTATTCAGGGTCGTGGGATAAGTCTTTCAAGGTTTGGAGAATCGCGGATTCCAAATGCTTGGAGTCGGTCGCAGCTCATGACGATGCAGTAAACAGTGTCGTCGTGGGGGTTGAGTCGTTGGTGTTCACCGGGTCCGCGGACGGAACAGTGAAGGTGTGGAGGAGGGAATTGCAAGGGAAGGGGACAACGCATGTGTTGGTTCAGACGTTGCTGAAGCAGGAGAATGCAGTGACTGCATTGGTTGTGAACAAAGAGGCGGCGATTGTCTATTGCGGGTCCTCCGATGGGTTGGTTAATTATTGGGAGCGCGAGAAGCACCTGTCCCACGGCGGGGTTTTGCGCGGTCATAAACTGGCCGTGCTGTGCTTGTCTGCAGCGGGAAACTTTGTTTTCAGCGGATCGGCGGACAAGAACATTTGCGTCTGGAGGAGGGATGCAGGTGGGCCCCACACCTGCTTGTCTGTTTTGACGGGCCACACAGGACCCGTCAAGTGCTTAACCGTGGTGGAAGATCATGGCTCTAAGGATAAGACGGATCAGCGATGGGTGGTGTACAGTGGGAGCCTCGACCGGTCAGTAAAGGTGTGGTGCGTGTCGGAGGATGCTCCGGACTTGAGGCAATTCCGAGCGTTGGAGAATGATGCCTCCGTGAGGCAGCAAGCCCTTCAGTTTCAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

481

Amino Acids

52.98

Weight (kDa)

9.23

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_SCAP	PF24017	75 - 360	1.1e-14	SCAP Beta-propeller
Beta-prop_WDR3_1st	PF25173	232 - 308	1.1e-10	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	233 - 396	3.5e-09	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	235 - 396	1.4e-11	WDHD1 first WD40 domain
WDR55	PF24796	237 - 358	1.4e-11	WDR55
Beta-prop_WDR5	PF25175	237 - 309	1.2e-12	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	238 - 319	2.6e-07	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	238 - 377	7.3e-10	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	239 - 360	8.7e-10	THOC3 beta-propeller domain
WD40_Prp19	PF24814	241 - 357	2.5e-13	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	242 - 358	1.6e-12	WDR3 second beta-propeller domain
NBCH_WD40	PF20426	242 - 349	1.8e-11	Neurobeachin beta propeller domain
Beta-prop_EML_2	PF23414	245 - 401	7.9e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	293 - 378	2.7e-06	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	319 - 454	1e-16	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	320 - 453	3.8e-13	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	324 - 472	2.1e-08	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	326 - 455	6.2e-06	WDHD1 first WD40 domain
Beta-prop_TEP1_2nd	PF25047	331 - 459	5.4e-09	TEP-1 second beta-propeller
WD40	PF00400	365 - 396	9.9e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	367 - 450	3.7e-06	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	374 - 455	4.8e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	375 - 454	8.2e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49450 AT3G18950
fragaria_vesca	FvH4_2g07401
malus_domestica	MD00G1129400.v1.1 MD10G1086000.v1.1
prunus_persica	Prupe.8G110400_v2.0.a1
pyrus_communis	pycom10g06780
rosa_chinensis	RchiOBHm_Chr6g0260861
rosa_laevigata	RLG00000014479
rosa_multiflora	Rmu_sc0000588.1_g000049 Rmu_sc0005980.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207480
rosa_samantha	Rh6AG112700 Rh6BG106500 Rh6CG103800 Rh6DG094700
rosa_wichuraiana	Rw6G009560 Rw6G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1190, 1223
Acc36I	ACCTGC	2 cut(s)	1190, 1223
AccB1I	GGYRCC	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	501
AccI	GTMKAC	1 cut(s)	685
AccII	CGCG	4 cut(s)	806, 899, 1071, 1104
AccIII	TCCGGA	1 cut(s)	1369
AclI	AACGTT	1 cut(s)	696
AclWI	GGATC	3 cut(s)	559, 1168, 1305
AcoI	YGGCCR	1 cut(s)	1116
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	2 cut(s)	995, 1412
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	223, 1316
AfiI	CCNNNNNNNGG	9 cut(s)	71, 356, 444, 534, 1047, 1092, 1093, 1393, 1413
AflIII	ACRYGT	1 cut(s)	454
AgeI	ACCGGT	2 cut(s)	545, 1332
AgsI	TTSAA	4 cut(s)	328, 472, 490, 790
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	3 cut(s)	621, 651, 836
AluI	AGCT	3 cut(s)	621, 651, 836
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	2 cut(s)	114, 411
AlwI	GGATC	3 cut(s)	559, 1168, 1305
AlwNI	CAGNNNCTG	1 cut(s)	995
Aor13HI	TCCGGA	1 cut(s)	1369
AoxI	GGCC	4 cut(s)	388, 1116, 1205, 1234
ApaI	GGGCCC	1 cut(s)	1209
ApeKI	GCWGC	5 cut(s)	231, 234, 833, 1136, 1417
ApoI	RAATTY	1 cut(s)	68
AseI	ATTAAT	1 cut(s)	374
AsiGI	ACCGGT	2 cut(s)	545, 1332
AspLEI	GCGC	3 cut(s)	26, 1071, 1104
AspS9I	GGNCC	8 cut(s)	435, 679, 894, 1038, 1205, 1206, 1234, 1244
AsuC2I	CCSGG	3 cut(s)	275, 380, 892
AsuHPI	GGTGA	5 cut(s)	240, 279, 294, 542, 880
AsuII	TTCGAA	1 cut(s)	703
AvaII	GGWCC	5 cut(s)	435, 679, 894, 1038, 1244
BaeGI	GKGCMC	1 cut(s)	1209
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	2 cut(s)	653, 1209
BarI	GAAGNNNNNNTAC	2 cut(s)	610, 642
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	5 cut(s)	243, 246, 845, 1148, 1429
BccI	CCATC	4 cut(s)	106, 551, 1040, 1299
BceAI	ACGGC	2 cut(s)	1103, 1105
BciT130I	CCWGG	1 cut(s)	204
BciVI	GTATCC	1 cut(s)	200
BcnI	CCSGG	3 cut(s)	275, 380, 892
BcoDI	GTCTC	2 cut(s)	114, 411
BfmI	CTRYAG	1 cut(s)	1134
BfoI	RGCGCY	1 cut(s)	27
BfuAI	ACCTGC	2 cut(s)	1190, 1223
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	6 cut(s)	232, 235, 834, 1020, 1137, 1418
BlsI	GCNGC	6 cut(s)	233, 236, 835, 1021, 1138, 1419
Bme1390I	CCNGG	4 cut(s)	204, 275, 380, 892
Bme18I	GGWCC	5 cut(s)	435, 679, 894, 1038, 1244
BmgT120I	GGNCC	8 cut(s)	435, 679, 894, 1038, 1205, 1206, 1234, 1244
BmrFI	CCNGG	4 cut(s)	204, 275, 380, 892
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	5 cut(s)	709, 835, 1186, 1354, 1393
BmuI	ACTGGG	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	1207
Bpu14I	TTCGAA	1 cut(s)	703
BpuEI	CTTGAG	1 cut(s)	1396
BpuMI	CCSGG	3 cut(s)	275, 380, 892
BsaAI	YACGTR	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	8 cut(s)	27, 189, 240, 266, 305, 897, 1087, 1263
BsaWI	WCCGGW	4 cut(s)	527, 545, 1332, 1369
Bsc4I	CCNNNNNNNGG	9 cut(s)	71, 356, 444, 534, 1047, 1092, 1093, 1393, 1413
Bse118I	RCCGGY	2 cut(s)	545, 1332
Bse1I	ACTGG	2 cut(s)	436, 1119
Bse3DI	GCAATG	1 cut(s)	49
BseAI	TCCGGA	1 cut(s)	1369
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	8 cut(s)	27, 189, 240, 266, 305, 897, 1087, 1263
BseGI	GGATG	3 cut(s)	562, 1201, 1369
BseLI	CCNNNNNNNGG	9 cut(s)	71, 356, 444, 534, 1047, 1092, 1093, 1393, 1413
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	436, 1119
BseRI	GAGGAG	4 cut(s)	30, 33, 937, 1204
BseSI	GKGCMC	1 cut(s)	1209
BseXI	GCAGC	5 cut(s)	243, 246, 845, 1148, 1429
Bsh1236I	CGCG	4 cut(s)	806, 899, 1071, 1104
Bsh1285I	CGRYCG	2 cut(s)	831, 1333
BshFI	GGCC	4 cut(s)	390, 1118, 1207, 1236
BshNI	GGYRCC	1 cut(s)	23
BshTI	ACCGGT	2 cut(s)	545, 1332
BsiEI	CGRYCG	2 cut(s)	831, 1333
BsiHKAI	GWGCWC	1 cut(s)	653
BsiSI	CCGG	7 cut(s)	275, 379, 528, 546, 891, 1333, 1370
BslFI	GGGAC	2 cut(s)	958, 1069
BslI	CCNNNNNNNGG	9 cut(s)	71, 356, 444, 534, 1047, 1092, 1093, 1393, 1413
BsmAI	GTCTC	2 cut(s)	114, 411
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	958, 1069
BsmI	GAATGC	2 cut(s)	85, 991
BsnI	GGCC	4 cut(s)	390, 1118, 1207, 1236
Bsp119I	TTCGAA	1 cut(s)	703
Bsp120I	GGGCCC	1 cut(s)	1205
Bsp1286I	GDGCHC	2 cut(s)	653, 1209
Bsp13I	TCCGGA	1 cut(s)	1369
Bsp1407I	TGTACA	1 cut(s)	1314
Bsp143I	GATC	4 cut(s)	564, 1160, 1273, 1297
Bsp19I	CCATGG	2 cut(s)	27, 266
BspANI	GGCC	4 cut(s)	390, 1118, 1207, 1236
BspCNI	CTCAG	1 cut(s)	238
BspEI	TCCGGA	1 cut(s)	1369
BspFNI	CGCG	4 cut(s)	806, 899, 1071, 1104
BspHI	TCATGA	1 cut(s)	838
BspMAI	CTGCAG	1 cut(s)	1138
BspMI	ACCTGC	2 cut(s)	1190, 1223
BspPI	GGATC	3 cut(s)	559, 1168, 1305
BspT104I	TTCGAA	1 cut(s)	703
BspT107I	GGYRCC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	2 cut(s)	545, 1332
BsrGI	TGTACA	1 cut(s)	1314
BsrI	ACTGG	2 cut(s)	436, 1119
BssAI	RCCGGY	2 cut(s)	545, 1332
BssECI	CCNNGG	8 cut(s)	27, 189, 240, 266, 305, 897, 1087, 1263
BssMI	GATC	4 cut(s)	564, 1160, 1273, 1297
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	2 cut(s)	27, 266
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	8 cut(s)	108, 179, 306, 318, 857, 910, 1264, 1319
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstAUI	TGTACA	1 cut(s)	1314
BstBAI	YACGTR	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	703
BstC8I	GCNNGC	3 cut(s)	405, 623, 1422
BstDEI	CTNAG	2 cut(s)	225, 1284
BstDSI	CCRYGG	6 cut(s)	27, 266, 305, 897, 1087, 1263
BstENI	CCTNNNNNAGG	1 cut(s)	1411
BstF5I	GGATG	3 cut(s)	562, 1201, 1369
BstFNI	CGCG	4 cut(s)	806, 899, 1071, 1104
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	3 cut(s)	26, 1071, 1104
BstKTI	GATC	4 cut(s)	567, 1163, 1276, 1300
BstMAI	GTCTC	2 cut(s)	114, 411
BstMBI	GATC	4 cut(s)	564, 1160, 1273, 1297
BstMCI	CGRYCG	2 cut(s)	831, 1333
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 995, 1075
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	956
BstSCI	CCNGG	4 cut(s)	202, 273, 378, 890
BstSFI	CTRYAG	1 cut(s)	1134
BstSLI	GKGCMC	1 cut(s)	1209
BstUI	CGCG	4 cut(s)	806, 899, 1071, 1104
BstV1I	GCAGC	5 cut(s)	243, 246, 845, 1148, 1429
BstX2I	RGATCY	1 cut(s)	564
BstXI	CCANNNNNNTGG	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	4 cut(s)	390, 1118, 1207, 1236
BtgI	CCRYGG	6 cut(s)	27, 266, 305, 897, 1087, 1263
BtgZI	GCGATG	1 cut(s)	1318
BtsCI	GGATG	3 cut(s)	562, 1201, 1369
BtsI	GCAGTG	2 cut(s)	190, 996
BtsIMutI	CAGTG	6 cut(s)	190, 429, 862, 915, 996, 1324
BveI	ACCTGC	2 cut(s)	1190, 1223
Cac8I	GCNNGC	3 cut(s)	405, 623, 1422
CaiI	CAGNNNCTG	1 cut(s)	995
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	3 cut(s)	26, 1071, 1104
Cfr10I	RCCGGY	2 cut(s)	545, 1332
Cfr13I	GGNCC	8 cut(s)	435, 679, 894, 1038, 1205, 1206, 1234, 1244
Cfr42I	CCGCGG	1 cut(s)	900
CseI	GACGC	2 cut(s)	273, 1171
Csp6I	GTAC	2 cut(s)	222, 1315
CspAI	ACCGGT	2 cut(s)	545, 1332
CviAII	CATG	8 cut(s)	28, 259, 267, 733, 739, 839, 953, 1277
CviQI	GTAC	2 cut(s)	222, 1315
DdeI	CTNAG	2 cut(s)	225, 1284
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	4 cut(s)	566, 1162, 1275, 1299
DpnII	GATC	4 cut(s)	564, 1160, 1273, 1297
EaeI	YGGCCR	1 cut(s)	1116
EciI	GGCGGA	1 cut(s)	1181
Ecl136II	GAGCTC	1 cut(s)	651
Eco130I	CCWWGG	2 cut(s)	27, 266
Eco24I	GRGCYC	2 cut(s)	653, 1209
Eco47I	GGWCC	5 cut(s)	435, 679, 894, 1038, 1244
Eco53kI	GAGCTC	1 cut(s)	651
Eco57I	CTGAAG	2 cut(s)	995, 1412
EcoICRI	GAGCTC	1 cut(s)	651
EcoNI	CCTNNNNNAGG	1 cut(s)	1411
EcoO109I	RGGNCCY	3 cut(s)	1038, 1206, 1244
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	27, 266
EcoT38I	GRGCYC	2 cut(s)	653, 1209
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	27, 266
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	8 cut(s)	31, 262, 270, 736, 742, 842, 956, 1280
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FaqI	GGGAC	2 cut(s)	958, 1069
FatI	CATG	8 cut(s)	27, 258, 266, 732, 738, 838, 952, 1276
FauI	CCCGC	4 cut(s)	494, 1028, 1085, 1132
FblI	GTMKAC	1 cut(s)	685
Fnu4HI	GCNGC	6 cut(s)	232, 235, 834, 1020, 1137, 1418
FokI	GGATG	3 cut(s)	569, 1208, 1376
FriOI	GRGCYC	2 cut(s)	653, 1209
Fsp4HI	GCNGC	6 cut(s)	232, 235, 834, 1020, 1137, 1418
GlaI	GCGC	3 cut(s)	25, 1070, 1103
GluI	GCNGC	6 cut(s)	232, 235, 834, 1020, 1137, 1418
GsuI	CTGGAG	1 cut(s)	1207
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	4 cut(s)	390, 1118, 1207, 1236
HapII	CCGG	7 cut(s)	275, 379, 528, 546, 891, 1333, 1370
HgaI	GACGC	2 cut(s)	273, 1171
HhaI	GCGC	3 cut(s)	26, 1071, 1104
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	8 cut(s)	31, 262, 270, 736, 742, 842, 956, 1280
Hin6I	GCGC	3 cut(s)	24, 1069, 1102
HinP1I	GCGC	3 cut(s)	24, 1069, 1102
HindIII	AAGCTT	1 cut(s)	619
HinfI	GANTC	7 cut(s)	328, 570, 705, 801, 809, 824, 875
HpaII	CCGG	7 cut(s)	275, 379, 528, 546, 891, 1333, 1370
HphI	GGTGA	5 cut(s)	240, 279, 294, 542, 880
Hpy166II	GTNNAC	6 cut(s)	248, 686, 853, 888, 1009, 1315
Hpy188III	TCNNGA	6 cut(s)	460, 554, 574, 839, 1186, 1370
Hpy8I	GTNNAC	6 cut(s)	248, 686, 853, 888, 1009, 1315
Hpy99I	CGWCG	2 cut(s)	322, 866
HpyAV	CCTTC	6 cut(s)	380, 466, 571, 907, 934, 1436
HpyCH4III	ACNGT	8 cut(s)	108, 179, 306, 318, 857, 910, 1264, 1319
HpyCH4IV	ACGT	3 cut(s)	454, 696, 968
HpyCH4V	TGCA	8 cut(s)	85, 732, 848, 934, 989, 998, 1136, 1199
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 995, 1075
HpyF3I	CTNAG	2 cut(s)	225, 1284
HpySE526I	ACGT	3 cut(s)	454, 696, 968
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	8 cut(s)	31, 262, 270, 736, 742, 842, 956, 1280
HspAI	GCGC	3 cut(s)	24, 1069, 1102
KasI	GGCGCC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	1369
KspI	CCGCGG	1 cut(s)	900
Kzo9I	GATC	4 cut(s)	564, 1160, 1273, 1297
LmnI	GCTCC	5 cut(s)	74, 648, 1066, 1323, 1372
Lsp1109I	GCAGC	5 cut(s)	243, 246, 845, 1148, 1429
LweI	GCATC	5 cut(s)	709, 835, 1186, 1354, 1393
MaeII	ACGT	3 cut(s)	454, 696, 968
MaeIII	GTNAC	3 cut(s)	285, 300, 991
MalI	GATC	4 cut(s)	566, 1162, 1275, 1299
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	4 cut(s)	564, 1160, 1273, 1297
MboII	GAAGA	4 cut(s)	395, 475, 758, 1283
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	1 cut(s)	564
MhlI	GDGCHC	2 cut(s)	653, 1209
MluCI	AATT	5 cut(s)	68, 217, 929, 1057, 1382
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	3 cut(s)	579, 833, 884
MmeI	TCCRAC	5 cut(s)	117, 137, 595, 1338, 1374
MroI	TCCGGA	1 cut(s)	1369
MseI	TTAA	4 cut(s)	353, 374, 1056, 1259
MslI	CAYNNNNRTG	5 cut(s)	159, 555, 717, 737, 843
MspA1I	CMGCKG	4 cut(s)	334, 899, 1139, 1158
MspI	CCGG	7 cut(s)	275, 379, 528, 546, 891, 1333, 1370
MspR9I	CCNGG	4 cut(s)	204, 275, 380, 892
MunI	CAATTG	1 cut(s)	217
Mva1269I	GAATGC	2 cut(s)	85, 991
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	4 cut(s)	806, 899, 1071, 1104
MwoI	GCNNNNNNNGC	3 cut(s)	32, 995, 1075
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	3 cut(s)	275, 380, 892
NcoI	CCATGG	2 cut(s)	27, 266
NdeII	GATC	4 cut(s)	564, 1160, 1273, 1297
NlaIII	CATG	8 cut(s)	31, 262, 270, 736, 742, 842, 956, 1280
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	3 cut(s)	285, 300, 991
NspI	RCATGY	1 cut(s)	956
NspV	TTCGAA	1 cut(s)	703
PagI	TCATGA	1 cut(s)	838
PaqCI	CACCTGC	2 cut(s)	1190, 1223
PctI	GAATGC	2 cut(s)	85, 991
PfeI	GAWTC	4 cut(s)	328, 705, 801, 809
PfoI	TCCNGGA	2 cut(s)	202, 378
PinAI	ACCGGT	2 cut(s)	545, 1332
PkrI	GCNGC	6 cut(s)	233, 236, 835, 1021, 1138, 1419
PleI	GAGTC	3 cut(s)	578, 832, 883
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	3 cut(s)	578, 832, 883
Ppu21I	YACGTR	1 cut(s)	455
PpuMI	RGGWCCY	2 cut(s)	1038, 1244
PshBI	ATTAAT	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	653
Psp1406I	AACGTT	1 cut(s)	696
Psp5II	RGGWCCY	2 cut(s)	1038, 1244
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspOMI	GGGCCC	1 cut(s)	1205
PspPI	GGNCC	8 cut(s)	435, 679, 894, 1038, 1205, 1206, 1234, 1244
PspPPI	RGGWCCY	2 cut(s)	1038, 1244
PstI	CTGCAG	1 cut(s)	1138
PstNI	CAGNNNCTG	1 cut(s)	995
PsuI	RGATCY	1 cut(s)	564
RsaI	GTAC	2 cut(s)	223, 1316
RsaNI	GTAC	2 cut(s)	222, 1315
RseI	CAYNNNNRTG	5 cut(s)	159, 555, 717, 737, 843
SacI	GAGCTC	1 cut(s)	653
SacII	CCGCGG	1 cut(s)	900
SaqAI	TTAA	4 cut(s)	353, 374, 1056, 1259
SatI	GCNGC	6 cut(s)	232, 235, 834, 1020, 1137, 1418
Sau3AI	GATC	4 cut(s)	564, 1160, 1273, 1297
Sau96I	GGNCC	8 cut(s)	435, 679, 894, 1038, 1205, 1206, 1234, 1244
SchI	GAGTC	3 cut(s)	579, 833, 884
ScrFI	CCNGG	4 cut(s)	204, 275, 380, 892
SduI	GDGCHC	2 cut(s)	653, 1209
SfaNI	GCATC	5 cut(s)	709, 835, 1186, 1354, 1393
SfcI	CTRYAG	1 cut(s)	1134
SfoI	GGCGCC	1 cut(s)	25
Sfr303I	CCGCGG	1 cut(s)	900
SfuI	TTCGAA	1 cut(s)	703
SgrBI	CCGCGG	1 cut(s)	900
SinI	GGWCC	5 cut(s)	435, 679, 894, 1038, 1244
SmiMI	CAYNNNNRTG	5 cut(s)	159, 555, 717, 737, 843
SmlI	CTYRAG	1 cut(s)	1375
SmoI	CTYRAG	1 cut(s)	1375
Sse9I	AATT	5 cut(s)	68, 217, 929, 1057, 1382
SspDI	GGCGCC	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	653
StyD4I	CCNGG	4 cut(s)	202, 273, 378, 890
StyI	CCWWGG	2 cut(s)	27, 266
TaaI	ACNGT	8 cut(s)	108, 179, 306, 318, 857, 910, 1264, 1319
TaiI	ACGT	3 cut(s)	457, 699, 971
TaqI	TCGA	2 cut(s)	703, 1329
TaqII	GACCGA	1 cut(s)	817
TasI	AATT	5 cut(s)	68, 217, 929, 1057, 1382
TatI	WGTACW	2 cut(s)	221, 1314
TauI	GCSGC	1 cut(s)	1022
TfiI	GAWTC	4 cut(s)	328, 705, 801, 809
Tru1I	TTAA	4 cut(s)	353, 374, 1056, 1259
Tru9I	TTAA	4 cut(s)	353, 374, 1056, 1259
TscAI	CASTG	6 cut(s)	190, 436, 862, 915, 996, 1324
TseFI	GTSAC	3 cut(s)	285, 300, 991
TseI	GCWGC	5 cut(s)	231, 234, 833, 1136, 1417
Tsp45I	GTSAC	3 cut(s)	285, 300, 991
TspDTI	ATGAA	3 cut(s)	647, 671, 755
TspGWI	ACGGA	5 cut(s)	372, 671, 918, 1310, 1399
TspRI	CASTG	6 cut(s)	190, 436, 862, 915, 996, 1324
VpaK11BI	GGWCC	5 cut(s)	435, 679, 894, 1038, 1244
VspI	ATTAAT	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	1411
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	1 cut(s)	956
XmiI	GTMKAC	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.