Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012864

Physical Location & Seq

Genomic Coordinates Reverse (-)

11507824 .. 11510520

Gene Structure 2697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGAGAAAGGAAAGAGGTGGAACTATGGTGGCGGAACGTACCACATTCCACAGACCAAAATTCGGAGCCCTATTGCAGTCCGATCCAAACATACCATCCCCAAATACACACAATAACAGTGACAAAGAGCACAGCGTACGTAGCTCATCCGTGAGCCCCGGTTACTACGACAACAACAGCAGCAACGTGCGCAGCTCAGCCACGAGCCCCGGTTATTACGACAACAACCCCTTCAGCTCCTCCGCCAGTCCCGGGTACTACGACAACGCACGTGCGATGTCCGTGAGCCCGGCCACAACTCTCGGGTTCTACGACGACAACAACAACGTGCAGGGCAGCAGCGTCGGTTCAACTCCATACGCCATGTCGCCGTGGAACCATGAGTCGCCGTACAACAAGTCGCCGTGGATAGCGCCATCGCCGTTAAACCCGTTGATGGACGAGAGGTGCTTGCCTGAGAGCGGGCTTGTTGGGTCGTTGGTACGAGAACAAGGGCATATATATTCGCTAGCGGTGAGCGGAGACTTGTTGTATACCGGGTCGGATAGTAAGAACATCCGGGTCTGGAAGAACTTGAAGGATTTCACCGGGTTCAAATCCAACAGCGGGTTGGTGAAAACCATTGTGATTTGCGGAGAGAAGATATTCACGGGTCACCAAGATGGAAAAATCCGGGTATGGAAAGTTTCTCAGAAAAAGCCGAGCCTTCACAAACGGATCGGATCATTGCCGGCGTTGAAAGATTTCATCCGGAGCTCTATGAACCCGAAGAATTACGTGGAGGTCAGACGCCACCGTAACGTGGTGAAGATCAGACACTTTGACGCGGTCTCGTGTATGAGCTTGAACGAAGAACTAGGGCTCTTATATTCCGGTTCATGGGACAAGACGTTCAAGGTTTGGAGAATTGCCGATTCCAAGTGTTTGGAATCTGTATCGGCTCATGATGACGCCGTGAACTCTGTGGTCGTTGGTTTTGATTCGTTGGTGTTCACCGGCTCGGCGGACGGGACTGTAAAAGTGTGGAGGAGAGAGCTACAAGGAAAAGGCTCGACGCATTTCTTGGTGCAGACATTGCTGAAGCAAGAGAACGCAGTGACGGCATTGGCGGTGAACCAATCGGCGGCGATCGTTTACTGCGGCTCGTCTGACGGGAACGTCAACTATTGGGAACGTGAGAAGCATCTTTCACACGGTGGGGTTCTCCGCGGCCACAGGCTTGCCGTGCTCTGCCTTGCCGCAGCCGGGAACTTGGTGTTCAGCGGCTCGGCGGACAAGAACATTTGCGTGTGGAGAAGGGAGGTTGGCCCGGGAGGGTCCCACTCGTGCCTGTCGGTCTTGACGGGCCACTTAGGACCCGTCAAGTGCCTGACCGTAGAGGAAGACCGCAGCCGCGCCGAGGACAAAACCGACCAGAAATGGATTGTGTACAGTGGGAGCTTGGATAGGTCGGTGAAGGTGTGGCGGGTTTCTGAGCAACCACCGGACTTAAGGCGGATGGTGTTGTCGGAGAAGCAAGCTTCTTCTAAGAGTAACTATTCTAACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

516

Amino Acids

56.93

Weight (kDa)

9.23

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_SCAP	PF24017	164 - 393	1.1e-12	SCAP Beta-propeller
WD40_Gbeta	PF25391	268 - 431	1.6e-10	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	269 - 345	4.1e-07	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	272 - 344	1e-12	WDR5 beta-propeller domain
WDR55	PF24796	272 - 373	1.1e-06	WDR55
Beta-prop_WDR3_1st	PF25173	273 - 343	1.9e-09	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	273 - 352	6.9e-06	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	275 - 394	8e-10	THOC3 beta-propeller domain
WD40_Prp19	PF24814	276 - 393	3.3e-13	Prp19 WD40 domain
Beta-prop_WDR3_2nd	PF25172	277 - 393	3.4e-12	WDR3 second beta-propeller domain
NBCH_WD40	PF20426	279 - 343	9.1e-09	Neurobeachin beta propeller domain
Beta-prop_EML_2	PF23414	286 - 433	1.3e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40	PF00400	307 - 342	5.7e-06	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	355 - 493	1.7e-13	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	355 - 493	4.3e-16	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	359 - 508	1.3e-08	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	363 - 460	3.7e-08	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	368 - 502	1.6e-10	TEP-1 second beta-propeller
WD40_Prp19	PF24814	410 - 493	1.8e-06	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49450 AT3G18950
fragaria_vesca	FvH4_2g07401
malus_domestica	MD00G1129400.v1.1 MD10G1086000.v1.1
prunus_persica	Prupe.8G110400_v2.0.a1
pyrus_communis	pycom10g06780
rosa_chinensis	RchiOBHm_Chr6g0260861
rosa_laevigata	RLG00000014479
rosa_multiflora	Rmu_sc0000588.1_g000049 Rmu_sc0005980.1_g000006
rosa_roxburghii	Rroxscaffold_7G00207480
rosa_samantha	Rh6AG112700 Rh6BG106500 Rh6CG103800 Rh6DG094700
rosa_wichuraiana	Rw6G009560 Rw6G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1157
Acc16I	TGCGCA	1 cut(s)	191
AccBSI	CCGCTC	2 cut(s)	462, 519
AccI	GTMKAC	1 cut(s)	533
AccII	CGCG	3 cut(s)	827, 1209, 1395
AccIII	TCCGGA	1 cut(s)	750
AclWI	GGATC	3 cut(s)	77, 725, 730
AcoI	YGGCCR	2 cut(s)	291, 1210
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	2 cut(s)	217, 1100
AcvI	CACGTG	1 cut(s)	272
AcyI	GRCGYC	2 cut(s)	790, 951
AdeI	CACNNNGTG	1 cut(s)	1196
AfaI	GTAC	6 cut(s)	40, 138, 257, 392, 483, 1430
AflII	CTTAAG	1 cut(s)	1489
AgsI	TTSAA	6 cut(s)	351, 577, 595, 739, 847, 895
AloI	GAACNNNNNNTCC	2 cut(s)	875, 907
AluBI	AGCT	8 cut(s)	144, 195, 237, 756, 843, 1036, 1440, 1520
AluI	AGCT	8 cut(s)	144, 195, 237, 756, 843, 1036, 1440, 1520
Alw21I	GWGCWC	3 cut(s)	132, 758, 1230
Alw26I	GTCTC	2 cut(s)	516, 835
AlwI	GGATC	3 cut(s)	77, 725, 730
Ama87I	CYCGRG	3 cut(s)	251, 302, 1309
Aor13HI	TCCGGA	1 cut(s)	750
AoxI	GGCC	4 cut(s)	291, 1210, 1306, 1345
ApeKI	GCWGC	6 cut(s)	180, 192, 336, 339, 1241, 1389
ApoI	RAATTY	1 cut(s)	59
Asp700I	GAANNNNTTC	3 cut(s)	581, 644, 743
AspLEI	GCGC	3 cut(s)	192, 415, 1397
AspS9I	GGNCC	4 cut(s)	1307, 1317, 1345, 1355
AsuHPI	GGTGA	8 cut(s)	526, 577, 625, 647, 817, 985, 1123, 1465
AsuNHI	GCTAGC	1 cut(s)	508
AvaI	CYCGRG	3 cut(s)	251, 302, 1309
AvaII	GGWCC	2 cut(s)	1317, 1355
BanII	GRGCYC	6 cut(s)	70, 158, 209, 290, 758, 864
BauI	CACGAG	3 cut(s)	202, 832, 1324
BbrPI	CACGTG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	1389
Bbv12I	GWGCWC	3 cut(s)	132, 758, 1230
BbvI	GCAGC	6 cut(s)	192, 204, 348, 351, 1253, 1401
BccI	CCATC	5 cut(s)	103, 424, 430, 656, 1492
BceAI	ACGGC	7 cut(s)	355, 373, 388, 406, 938, 1116, 1208
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BcoDI	GTCTC	2 cut(s)	516, 835
BfaI	CTAG	2 cut(s)	509, 857
BfoI	RGCGCY	1 cut(s)	416
BfrI	CTTAAG	1 cut(s)	1489
BlpI	GCTNAGC	1 cut(s)	196
Bme18I	GGWCC	2 cut(s)	1317, 1355
BmeT110I	CYCGRG	3 cut(s)	251, 302, 1309
BmgT120I	GGNCC	4 cut(s)	1307, 1317, 1345, 1355
BmiI	GGNNCC	5 cut(s)	67, 377, 1318, 1319, 1357
BmsI	GCATC	1 cut(s)	1192
BmtI	GCTAGC	1 cut(s)	512
BpiI	GAAGAC	1 cut(s)	1389
Bpu1102I	GCTNAGC	1 cut(s)	196
BsaAI	YACGTR	3 cut(s)	140, 272, 778
BsaHI	GRCGYC	2 cut(s)	790, 951
BsaI	GGTCTC	1 cut(s)	835
BsaJI	CCNNGG	8 cut(s)	157, 208, 251, 371, 404, 1207, 1309, 1398
BsaWI	WCCGGW	3 cut(s)	750, 872, 1483
Bse118I	RCCGGY	2 cut(s)	730, 995
Bse1I	ACTGG	1 cut(s)	246
Bse3DI	GCAATG	2 cut(s)	725, 1073
BseAI	TCCGGA	1 cut(s)	750
BseDI	CCNNGG	8 cut(s)	157, 208, 251, 371, 404, 1207, 1309, 1398
BseGI	GGATG	5 cut(s)	95, 146, 555, 747, 1503
BseMI	GCAATG	2 cut(s)	725, 1073
BseMII	CTCAG	4 cut(s)	210, 447, 704, 1464
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	2 cut(s)	229, 1042
BseXI	GCAGC	6 cut(s)	192, 204, 348, 351, 1253, 1401
BsgI	GTGCAG	2 cut(s)	350, 1088
Bsh1236I	CGCG	3 cut(s)	827, 1209, 1395
Bsh1285I	CGRYCG	1 cut(s)	1131
BshFI	GGCC	4 cut(s)	293, 1212, 1308, 1347
BsiEI	CGRYCG	1 cut(s)	1131
BsiHKAI	GWGCWC	3 cut(s)	132, 758, 1230
BsiHKCI	CYCGRG	3 cut(s)	251, 302, 1309
BsiWI	CGTACG	1 cut(s)	136
BslFI	GGGAC	4 cut(s)	234, 896, 1024, 1303
BsmAI	GTCTC	2 cut(s)	516, 835
BsmFI	GGGAC	4 cut(s)	234, 896, 1024, 1303
BsnI	GGCC	4 cut(s)	293, 1212, 1308, 1347
Bso31I	GGTCTC	1 cut(s)	835
BsoBI	CYCGRG	3 cut(s)	251, 302, 1309
Bsp1286I	GDGCHC	8 cut(s)	70, 132, 158, 209, 290, 758, 864, 1230
Bsp13I	TCCGGA	1 cut(s)	750
Bsp1407I	TGTACA	1 cut(s)	1428
Bsp143I	GATC	5 cut(s)	82, 717, 722, 810, 1128
Bsp1720I	GCTNAGC	1 cut(s)	196
BspANI	GGCC	4 cut(s)	293, 1212, 1308, 1347
BspCNI	CTCAG	4 cut(s)	209, 448, 703, 1465
BspEI	TCCGGA	1 cut(s)	750
BspFNI	CGCG	3 cut(s)	827, 1209, 1395
BspHI	TCATGA	1 cut(s)	943
BspLI	GGNNCC	5 cut(s)	67, 377, 1318, 1319, 1357
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	3 cut(s)	77, 725, 730
BspTI	CTTAAG	1 cut(s)	1489
BspTNI	GGTCTC	1 cut(s)	835
BsrBI	CCGCTC	2 cut(s)	462, 519
BsrDI	GCAATG	2 cut(s)	725, 1073
BsrFI	RCCGGY	2 cut(s)	730, 995
BsrGI	TGTACA	1 cut(s)	1428
BsrI	ACTGG	1 cut(s)	246
BssAI	RCCGGY	2 cut(s)	730, 995
BssECI	CCNNGG	8 cut(s)	157, 208, 251, 371, 404, 1207, 1309, 1398
BssMI	GATC	5 cut(s)	82, 717, 722, 810, 1128
BssNAI	GTATAC	1 cut(s)	534
BssNI	GRCGYC	2 cut(s)	790, 951
BssSI	CACGAG	3 cut(s)	202, 832, 1324
Bst1107I	GTATAC	1 cut(s)	534
Bst2BI	CACGAG	3 cut(s)	202, 832, 1324
Bst4CI	ACNGT	6 cut(s)	119, 797, 1015, 1196, 1375, 1433
BstACI	GRCGYC	2 cut(s)	790, 951
BstAFI	CTTAAG	1 cut(s)	1489
BstAPI	GCANNNNNTGC	1 cut(s)	1075
BstAUI	TGTACA	1 cut(s)	1428
BstBAI	YACGTR	3 cut(s)	140, 272, 778
BstC8I	GCNNGC	6 cut(s)	452, 464, 510, 732, 1221, 1518
BstDEI	CTNAG	6 cut(s)	196, 456, 690, 1351, 1473, 1527
BstDSI	CCRYGG	3 cut(s)	371, 404, 1207
BstEII	GGTNACC	1 cut(s)	653
BstF5I	GGATG	5 cut(s)	95, 146, 555, 747, 1503
BstFNI	CGCG	3 cut(s)	827, 1209, 1395
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	3 cut(s)	192, 415, 1397
BstKTI	GATC	5 cut(s)	85, 720, 725, 813, 1131
BstMAI	GTCTC	2 cut(s)	516, 835
BstMBI	GATC	5 cut(s)	82, 717, 722, 810, 1128
BstMCI	CGRYCG	1 cut(s)	1131
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 189, 1075, 1100, 1225
BstPI	GGTNACC	1 cut(s)	653
BstSNI	TACGTA	1 cut(s)	140
BstUI	CGCG	3 cut(s)	827, 1209, 1395
BstV1I	GCAGC	6 cut(s)	192, 204, 348, 351, 1253, 1401
BstV2I	GAAGAC	1 cut(s)	1389
BstXI	CCANNNNNNTGG	1 cut(s)	925
BstZ17I	GTATAC	1 cut(s)	534
BsuRI	GGCC	4 cut(s)	293, 1212, 1308, 1347
BtgI	CCRYGG	3 cut(s)	371, 404, 1207
BtgZI	GCGATG	2 cut(s)	290, 402
BtsCI	GGATG	5 cut(s)	95, 146, 555, 747, 1503
BtsI	GCAGTG	1 cut(s)	1101
BtsIMutI	CAGTG	3 cut(s)	124, 1101, 1438
Cac8I	GCNNGC	6 cut(s)	452, 464, 510, 732, 1221, 1518
CciI	TCATGA	1 cut(s)	943
CfoI	GCGC	3 cut(s)	192, 415, 1397
Cfr10I	RCCGGY	2 cut(s)	730, 995
Cfr13I	GGNCC	4 cut(s)	1307, 1317, 1345, 1355
Cfr42I	CCGCGG	1 cut(s)	1210
Cfr9I	CCCGGG	2 cut(s)	251, 1309
CseI	GACGC	5 cut(s)	331, 798, 833, 959, 1063
Csp6I	GTAC	6 cut(s)	39, 137, 256, 391, 482, 1429
CviAII	CATG	4 cut(s)	364, 380, 879, 944
CviQI	GTAC	6 cut(s)	39, 137, 256, 391, 482, 1429
DdeI	CTNAG	6 cut(s)	196, 456, 690, 1351, 1473, 1527
DpnI	GATC	5 cut(s)	84, 719, 724, 812, 1130
DpnII	GATC	5 cut(s)	82, 717, 722, 810, 1128
DraIII	CACNNNGTG	1 cut(s)	1196
DrdI	GACNNNNNNGTC	1 cut(s)	1157
DseDI	GACNNNNNNGTC	1 cut(s)	1157
EaeI	YGGCCR	2 cut(s)	291, 1210
EciI	GGCGGA	5 cut(s)	47, 232, 1019, 1286, 1510
Ecl136II	GAGCTC	1 cut(s)	756
Eco105I	TACGTA	1 cut(s)	140
Eco24I	GRGCYC	6 cut(s)	70, 158, 209, 290, 758, 864
Eco31I	GGTCTC	1 cut(s)	835
Eco47I	GGWCC	2 cut(s)	1317, 1355
Eco53kI	GAGCTC	1 cut(s)	756
Eco57I	CTGAAG	2 cut(s)	217, 1100
Eco72I	CACGTG	1 cut(s)	272
Eco88I	CYCGRG	3 cut(s)	251, 302, 1309
Eco91I	GGTNACC	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	756
EcoO109I	RGGNCCY	2 cut(s)	1317, 1355
EcoO65I	GGTNACC	1 cut(s)	653
EcoT38I	GRGCYC	6 cut(s)	70, 158, 209, 290, 758, 864
FaeI	CATG	4 cut(s)	367, 383, 882, 947
FaqI	GGGAC	4 cut(s)	234, 896, 1024, 1303
FatI	CATG	4 cut(s)	363, 379, 878, 943
FauI	CCCGC	3 cut(s)	455, 599, 1458
FblI	GTMKAC	1 cut(s)	533
FokI	GGATG	5 cut(s)	82, 133, 542, 734, 1510
FriOI	GRGCYC	6 cut(s)	70, 158, 209, 290, 758, 864
FspBI	CTAG	2 cut(s)	509, 857
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	3 cut(s)	191, 414, 1396
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	293, 1212, 1308, 1347
HgaI	GACGC	5 cut(s)	331, 798, 833, 959, 1063
HhaI	GCGC	3 cut(s)	192, 415, 1397
Hin1I	GRCGYC	2 cut(s)	790, 951
Hin1II	CATG	4 cut(s)	367, 383, 882, 947
Hin6I	GCGC	3 cut(s)	190, 413, 1395
HinP1I	GCGC	3 cut(s)	190, 413, 1395
HincII	GTYRAC	1 cut(s)	1162
HindII	GTYRAC	1 cut(s)	1162
HindIII	AAGCTT	1 cut(s)	1518
HinfI	GANTC	4 cut(s)	383, 914, 929, 980
HphI	GGTGA	8 cut(s)	526, 577, 625, 647, 817, 985, 1123, 1465
Hpy166II	GTNNAC	7 cut(s)	534, 958, 993, 1114, 1135, 1162, 1429
Hpy188III	TCNNGA	4 cut(s)	565, 751, 944, 1339
Hpy8I	GTNNAC	7 cut(s)	534, 958, 993, 1114, 1135, 1162, 1429
Hpy99I	CGWCG	3 cut(s)	317, 347, 1057
HpyAV	CCTTC	5 cut(s)	241, 571, 716, 1290, 1450
HpyCH4III	ACNGT	6 cut(s)	119, 797, 1015, 1196, 1375, 1433
HpyCH4V	TGCA	3 cut(s)	76, 331, 1069
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 189, 1075, 1100, 1225
HpyF3I	CTNAG	6 cut(s)	196, 456, 690, 1351, 1473, 1527
Hsp92I	GRCGYC	2 cut(s)	790, 951
Hsp92II	CATG	4 cut(s)	367, 383, 882, 947
HspAI	GCGC	3 cut(s)	190, 413, 1395
KflI	GGGWCCC	1 cut(s)	1317
Kpn2I	TCCGGA	1 cut(s)	750
KroI	GCCGGC	1 cut(s)	730
KroNI	GCCGGC	1 cut(s)	732
KspI	CCGCGG	1 cut(s)	1210
Kzo9I	GATC	5 cut(s)	82, 717, 722, 810, 1128
LmnI	GCTCC	4 cut(s)	65, 242, 753, 1437
Lsp1109I	GCAGC	6 cut(s)	192, 204, 348, 351, 1253, 1401
LweI	GCATC	1 cut(s)	1192
MaeI	CTAG	2 cut(s)	509, 857
MaeIII	GTNAC	6 cut(s)	119, 161, 653, 797, 1096, 1532
MalI	GATC	5 cut(s)	84, 719, 724, 812, 1130
MbiI	CCGCTC	2 cut(s)	462, 519
MboI	GATC	5 cut(s)	82, 717, 722, 810, 1128
MboII	GAAGA	7 cut(s)	580, 652, 781, 820, 863, 1394, 1515
MhlI	GDGCHC	8 cut(s)	70, 132, 158, 209, 290, 758, 864, 1230
MluCI	AATT	3 cut(s)	59, 772, 906
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	3 cut(s)	522, 624, 1488
MnlI	CCTC	9 cut(s)	8, 250, 438, 775, 1020, 1294, 1307, 1372, 1393
MroI	TCCGGA	1 cut(s)	750
MroNI	GCCGGC	1 cut(s)	730
MroXI	GAANNNNTTC	3 cut(s)	581, 644, 743
MseI	TTAA	2 cut(s)	425, 1490
MslI	CAYNNNNRTG	2 cut(s)	660, 1286
MspA1I	CMGCKG	3 cut(s)	606, 1209, 1263
MspCI	CTTAAG	1 cut(s)	1489
MvnI	CGCG	3 cut(s)	827, 1209, 1395
MwoI	GCNNNNNNNGC	5 cut(s)	141, 189, 1075, 1100, 1225
NaeI	GCCGGC	1 cut(s)	732
NdeII	GATC	5 cut(s)	82, 717, 722, 810, 1128
NgoMIV	GCCGGC	1 cut(s)	730
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	4 cut(s)	367, 383, 882, 947
NlaIV	GGNNCC	5 cut(s)	67, 377, 1318, 1319, 1357
NmeAIII	GCCGAG	4 cut(s)	726, 980, 1247, 1423
NmuCI	GTSAC	3 cut(s)	119, 653, 1096
NsbI	TGCGCA	1 cut(s)	191
PagI	TCATGA	1 cut(s)	943
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PdiI	GCCGGC	1 cut(s)	732
PdmI	GAANNNNTTC	3 cut(s)	581, 644, 743
PfeI	GAWTC	3 cut(s)	914, 929, 980
Pfl23II	CGTACG	1 cut(s)	136
PflFI	GACNNNGTC	1 cut(s)	827
Ple19I	CGATCG	1 cut(s)	1131
PleI	GAGTC	1 cut(s)	391
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	391
Ppu21I	YACGTR	3 cut(s)	140, 272, 778
PpuMI	RGGWCCY	2 cut(s)	1317, 1355
Psp124BI	GAGCTC	1 cut(s)	758
Psp5II	RGGWCCY	2 cut(s)	1317, 1355
PspCI	CACGTG	1 cut(s)	272
PspEI	GGTNACC	1 cut(s)	653
PspLI	CGTACG	1 cut(s)	136
PspN4I	GGNNCC	5 cut(s)	67, 377, 1318, 1319, 1357
PspPI	GGNCC	4 cut(s)	1307, 1317, 1345, 1355
PspPPI	RGGWCCY	2 cut(s)	1317, 1355
PsyI	GACNNNGTC	1 cut(s)	827
PvuI	CGATCG	1 cut(s)	1131
RsaI	GTAC	6 cut(s)	40, 138, 257, 392, 483, 1430
RsaNI	GTAC	6 cut(s)	39, 137, 256, 391, 482, 1429
RseI	CAYNNNNRTG	2 cut(s)	660, 1286
SacI	GAGCTC	1 cut(s)	758
SacII	CCGCGG	1 cut(s)	1210
SaqAI	TTAA	2 cut(s)	425, 1490
Sau3AI	GATC	5 cut(s)	82, 717, 722, 810, 1128
Sau96I	GGNCC	4 cut(s)	1307, 1317, 1345, 1355
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	8 cut(s)	70, 132, 158, 209, 290, 758, 864, 1230
SfaNI	GCATC	1 cut(s)	1192
Sfr303I	CCGCGG	1 cut(s)	1210
SgrBI	CCGCGG	1 cut(s)	1210
SinI	GGWCC	2 cut(s)	1317, 1355
SmaI	CCCGGG	2 cut(s)	253, 1311
SmiMI	CAYNNNNRTG	2 cut(s)	660, 1286
SmlI	CTYRAG	1 cut(s)	1489
SmoI	CTYRAG	1 cut(s)	1489
SnaBI	TACGTA	1 cut(s)	140
Sse9I	AATT	3 cut(s)	59, 772, 906
SspMI	CTAG	2 cut(s)	509, 857
SstI	GAGCTC	1 cut(s)	758
TaaI	ACNGT	6 cut(s)	119, 797, 1015, 1196, 1375, 1433
TaqI	TCGA	1 cut(s)	1052
TaqII	GACCGA	1 cut(s)	1324
TasI	AATT	3 cut(s)	59, 772, 906
TatI	WGTACW	1 cut(s)	1428
TauI	GCSGC	6 cut(s)	1127, 1143, 1212, 1241, 1266, 1395
TfiI	GAWTC	3 cut(s)	914, 929, 980
Tru1I	TTAA	2 cut(s)	425, 1490
Tru9I	TTAA	2 cut(s)	425, 1490
TscAI	CASTG	3 cut(s)	124, 1101, 1438
TseFI	GTSAC	3 cut(s)	119, 653, 1096
TseI	GCWGC	6 cut(s)	180, 192, 336, 339, 1241, 1389
Tsp45I	GTSAC	3 cut(s)	119, 653, 1096
TspDTI	ATGAA	3 cut(s)	736, 776, 867
TspGWI	ACGGA	3 cut(s)	139, 271, 730
TspMI	CCCGGG	2 cut(s)	251, 1309
TspRI	CASTG	3 cut(s)	124, 1101, 1438
Tth111I	GACNNNGTC	1 cut(s)	827
Vha464I	CTTAAG	1 cut(s)	1489
VpaK11BI	GGWCC	2 cut(s)	1317, 1355
XapI	RAATTY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XmaI	CCCGGG	2 cut(s)	251, 1309
XmiI	GTMKAC	1 cut(s)	533
XmnI	GAANNNNTTC	3 cut(s)	581, 644, 743
XspI	CTAG	2 cut(s)	509, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.