Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016750

Physical Location & Seq

Genomic Coordinates Reverse (-)

6870434 .. 6872817

Gene Structure 2384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACTATATATGAGACTGAAAAAACCAACCCTGATCCTTATCGAATCTTGATGGGACGCAACTTGAGGCTGCATCAGTTTGCACTTCATTCGTGCGCTTTGGAGAGTGGCGGTGGATTGGACATGCACGGCTGTAGACTTCCAGTTTGCAGCAGGGTTGAGACAAATATTAGTTTGTGTGCGCACATCAAGAGATGCTGCAAGAGGCTTGTAGCATGGCCTTTTCCTGCATGCTCCTATAGGGATCTTGTAGCTCGCTACGTAATGGACGAAGTCAATGATGAATGTGGTTTTGAATGCAACATTTGCCTTGGCTTAGCTCACGACCCCGTCATAACACTCTGCGGCCACCTCTACTGTTGGTCTTGTTTGCTCAAATGGCTGTTCAATACGCATTATGCCAACAATGAGTGTCCGGTTTGCAAGTCCGGAATCGAGTTCAACAAGTTGATATTTTCTTATGGAAGGTTGAAATCGTCTGAATGCAACCCGATATCTCGGTTTGAATGTAACATTTGCTCTGGATTAGCTCAAGATCCAATTGTAACACTCTGCGGCCACCTCTATTGTTGGCCATGCATCTATAAATGGCTGTCCAAGTGGAATTCAAATTCCAACTGTTGGGTTTGTAAGGCTGTTATAGAGGAGAACAAACTGATCCCTCTTTATGGAAAAGGGATAAGATCGTCCTCAGATGATTCAGACTCGGGATGTCGAGCTGTTGCACCTGCGAGCATTATATACAATGGAGATTTTTATAACGAGGGTTTTACCGGTAATTGCAATTCTTCTGATGTTTCATCCCTCCATGCCAAGGGAAAGGAAAAACGATTTGGTCGAGAAGGTTTTCGGGTTGAGTTTGTGGTGTTTGTTGATTCTAGTCGTTTGGGATATCCTCAGAGGAAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

304

Amino Acids

34.24

Weight (kDa)

8.1

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	99 - 141	8.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_3	PF13920	99 - 146	7.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	99 - 142	1.8e-07	Ring finger domain
zf-RING_5	PF14634	99 - 142	7e-07	zinc-RING finger domain
zf-C3HC4	PF00097	100 - 141	3.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	100 - 138	1.2e-07	RING-type zinc-finger
zf-C3HC4_4	PF15227	100 - 141	9.2e-06	zinc finger of C3HC4-type, RING
zf-C3HC4_3	PF13920	168 - 215	3.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	169 - 210	2.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	170 - 210	5.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	170 - 204	3.2e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016750)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07980
malus_domestica	MD05G1072100.v1.1 MD10G1082500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0262431
rosa_laevigata	RLG00000014429
rosa_multiflora	Rmu_co8450695.1_g000001 Rmu_sc0010965.1_g000002 Rmu_sc0018995.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434460 Rroxscaffold_7G00205270
rosa_rugosa	Rorug05G0597200
rosa_samantha	Rh6BG112000 Rh6CG110100 Rh6DG099700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	759
AarI	CACCTGC	1 cut(s)	736
Acc16I	TGCGCA	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	736
AccB7I	CCANNNNNTGG	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	136
AccIII	TCCGGA	1 cut(s)	428
AciI	CCGC	3 cut(s)	111, 345, 555
AclWI	GGATC	4 cut(s)	29, 252, 530, 652
AcoI	YGGCCR	3 cut(s)	346, 556, 572
AcsI	RAATTY	2 cut(s)	604, 610
AfiI	CCNNNNNNNGG	3 cut(s)	621, 668, 814
AgeI	ACCGGT	1 cut(s)	773
AgsI	TTSAA	6 cut(s)	296, 388, 442, 472, 506, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	816, 848
AluBI	AGCT	4 cut(s)	254, 320, 530, 719
AluI	AGCT	4 cut(s)	254, 320, 530, 719
Alw26I	GTCTC	2 cut(s)	8, 155
AlwI	GGATC	4 cut(s)	29, 252, 530, 652
Ama87I	CYCGRG	1 cut(s)	706
Aor13HI	TCCGGA	1 cut(s)	428
AoxI	GGCC	4 cut(s)	218, 346, 556, 572
ApeKI	GCWGC	3 cut(s)	70, 150, 198
ApoI	RAATTY	2 cut(s)	604, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AsiGI	ACCGGT	1 cut(s)	773
Asp700I	GAANNNNTTC	1 cut(s)	846
AspLEI	GCGC	2 cut(s)	98, 184
AvaI	CYCGRG	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	574
BbvI	GCAGC	3 cut(s)	57, 162, 185
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	145
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BcoDI	GTCTC	2 cut(s)	8, 155
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	2 cut(s)	133, 238
BfuAI	ACCTGC	1 cut(s)	736
BisI	GCNGC	5 cut(s)	71, 151, 199, 346, 556
BlpI	GCTNAGC	1 cut(s)	316
BlsI	GCNGC	5 cut(s)	72, 152, 200, 347, 557
BmeT110I	CYCGRG	1 cut(s)	706
BmsI	GCATC	3 cut(s)	82, 185, 588
Bpu1102I	GCTNAGC	1 cut(s)	316
BpuEI	CTTGAG	2 cut(s)	85, 516
BsaAI	YACGTR	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	310, 813
BsaWI	WCCGGW	3 cut(s)	415, 428, 773
Bsc4I	CCNNNNNNNGG	3 cut(s)	621, 668, 814
Bse118I	RCCGGY	1 cut(s)	773
Bse1I	ACTGG	1 cut(s)	143
Bse8I	GATNNNNATC	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	310, 813
BseGI	GGATG	2 cut(s)	716, 800
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	3 cut(s)	621, 668, 814
BseMII	CTCAG	2 cut(s)	705, 911
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	3 cut(s)	57, 162, 185
BshFI	GGCC	4 cut(s)	220, 348, 558, 574
BshTI	ACCGGT	1 cut(s)	773
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	3 cut(s)	416, 429, 774
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	3 cut(s)	621, 668, 814
BsmAI	GTCTC	2 cut(s)	8, 155
BsmFI	GGGAC	1 cut(s)	69
BsmI	GAATGC	2 cut(s)	302, 488
BsnI	GGCC	4 cut(s)	220, 348, 558, 574
BsoBI	CYCGRG	1 cut(s)	706
Bsp13I	TCCGGA	1 cut(s)	428
Bsp143I	GATC	5 cut(s)	34, 244, 535, 657, 683
Bsp1720I	GCTNAGC	1 cut(s)	316
BspACI	CCGC	3 cut(s)	111, 345, 555
BspANI	GGCC	4 cut(s)	220, 348, 558, 574
BspCNI	CTCAG	2 cut(s)	704, 910
BspEI	TCCGGA	1 cut(s)	428
BspMI	ACCTGC	1 cut(s)	736
BspPI	GGATC	4 cut(s)	29, 252, 530, 652
BsrFI	RCCGGY	1 cut(s)	773
BsrI	ACTGG	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	773
BssECI	CCNNGG	2 cut(s)	310, 813
BssMI	GATC	5 cut(s)	34, 244, 535, 657, 683
BssT1I	CCWWGG	2 cut(s)	310, 813
Bst4CI	ACNGT	2 cut(s)	359, 620
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	232, 256, 733
BstDEI	CTNAG	4 cut(s)	316, 691, 897, 909
BstF5I	GGATG	2 cut(s)	716, 800
BstHHI	GCGC	2 cut(s)	98, 184
BstKTI	GATC	5 cut(s)	37, 247, 538, 660, 686
BstMAI	GTCTC	2 cut(s)	8, 155
BstMBI	GATC	5 cut(s)	34, 244, 535, 657, 683
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 379
BstNSI	RCATGY	2 cut(s)	127, 234
BstSFI	CTRYAG	2 cut(s)	133, 238
BstSNI	TACGTA	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	57, 162, 185
BstX2I	RGATCY	2 cut(s)	244, 535
BstYI	RGATCY	2 cut(s)	244, 535
BsuRI	GGCC	4 cut(s)	220, 348, 558, 574
BtsCI	GGATG	2 cut(s)	716, 800
BveI	ACCTGC	1 cut(s)	736
Cac8I	GCNNGC	3 cut(s)	232, 256, 733
CfoI	GCGC	2 cut(s)	98, 184
Cfr10I	RCCGGY	1 cut(s)	773
CseI	GACGC	1 cut(s)	66
CspAI	ACCGGT	1 cut(s)	773
CspCI	CAANNNNNGTGG	2 cut(s)	548, 583
CviAII	CATG	5 cut(s)	124, 216, 231, 576, 809
DdeI	CTNAG	4 cut(s)	316, 691, 897, 909
DpnI	GATC	5 cut(s)	36, 246, 537, 659, 685
DpnII	GATC	5 cut(s)	34, 244, 535, 657, 683
EaeI	YGGCCR	3 cut(s)	346, 556, 572
Eco105I	TACGTA	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	310, 813
Eco32I	GATATC	2 cut(s)	495, 893
Eco88I	CYCGRG	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	604
EcoRV	GATATC	2 cut(s)	495, 893
EcoT14I	CCWWGG	2 cut(s)	310, 813
EcoT22I	ATGCAT	1 cut(s)	581
ErhI	CCWWGG	2 cut(s)	310, 813
FaeI	CATG	5 cut(s)	127, 219, 234, 579, 812
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	5 cut(s)	123, 215, 230, 575, 808
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	5 cut(s)	71, 151, 199, 346, 556
FokI	GGATG	2 cut(s)	723, 787
Fsp4HI	GCNGC	5 cut(s)	71, 151, 199, 346, 556
FspAI	RTGCGCAY	1 cut(s)	183
FspBI	CTAG	1 cut(s)	879
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	2 cut(s)	97, 183
GluI	GCNGC	5 cut(s)	71, 151, 199, 346, 556
HaeIII	GGCC	4 cut(s)	220, 348, 558, 574
HapII	CCGG	3 cut(s)	416, 429, 774
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	2 cut(s)	98, 184
Hin1II	CATG	5 cut(s)	127, 219, 234, 579, 812
Hin6I	GCGC	2 cut(s)	96, 182
HinP1I	GCGC	2 cut(s)	96, 182
HinfI	GANTC	5 cut(s)	45, 432, 698, 704, 875
HpaII	CCGG	3 cut(s)	416, 429, 774
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	5 cut(s)	481, 694, 703, 793, 900
Hpy188III	TCNNGA	8 cut(s)	49, 190, 323, 429, 522, 533, 708, 839
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	459, 836
HpyCH4III	ACNGT	2 cut(s)	359, 620
HpyCH4IV	ACGT	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 379
HpyF3I	CTNAG	4 cut(s)	316, 691, 897, 909
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	5 cut(s)	127, 219, 234, 579, 812
HspAI	GCGC	2 cut(s)	96, 182
Kpn2I	TCCGGA	1 cut(s)	428
Kzo9I	GATC	5 cut(s)	34, 244, 535, 657, 683
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	9 cut(s)	45, 139, 156, 240, 429, 442, 507, 741, 787
Lsp1109I	GCAGC	3 cut(s)	57, 162, 185
LweI	GCATC	3 cut(s)	82, 185, 588
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	509, 544
MalI	GATC	5 cut(s)	36, 246, 537, 659, 685
MboI	GATC	5 cut(s)	34, 244, 535, 657, 683
MboII	GAAGA	1 cut(s)	780
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	2 cut(s)	244, 535
MlsI	TGGCCA	1 cut(s)	574
MluCI	AATT	5 cut(s)	540, 604, 610, 778, 784
MluNI	TGGCCA	1 cut(s)	574
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	639
Mox20I	TGGCCA	1 cut(s)	574
Mph1103I	ATGCAT	1 cut(s)	581
MroI	TCCGGA	1 cut(s)	428
MroXI	GAANNNNTTC	1 cut(s)	846
MscI	TGGCCA	1 cut(s)	574
Msp20I	TGGCCA	1 cut(s)	574
MspI	CCGG	3 cut(s)	416, 429, 774
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	2 cut(s)	302, 488
MwoI	GCNNNNNNNGC	2 cut(s)	306, 379
NdeII	GATC	5 cut(s)	34, 244, 535, 657, 683
NlaIII	CATG	5 cut(s)	127, 219, 234, 579, 812
NsbI	TGCGCA	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	581
NspI	RCATGY	2 cut(s)	127, 234
PaeI	GCATGC	1 cut(s)	234
PaqCI	CACCTGC	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 835
PctI	GAATGC	2 cut(s)	302, 488
PdmI	GAANNNNTTC	1 cut(s)	846
PfeI	GAWTC	4 cut(s)	45, 432, 698, 875
PflFI	GACNNNGTC	2 cut(s)	272, 329
PflMI	CCANNNNNTGG	1 cut(s)	621
PinAI	ACCGGT	1 cut(s)	773
PkrI	GCNGC	5 cut(s)	72, 152, 200, 347, 557
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
Ppu21I	YACGTR	1 cut(s)	262
PsiI	TTATAA	1 cut(s)	759
PsuI	RGATCY	2 cut(s)	244, 535
PsyI	GACNNNGTC	2 cut(s)	272, 329
SatI	GCNGC	5 cut(s)	71, 151, 199, 346, 556
Sau3AI	GATC	5 cut(s)	34, 244, 535, 657, 683
SchI	GAGTC	1 cut(s)	698
SfaNI	GCATC	3 cut(s)	82, 185, 588
SfcI	CTRYAG	2 cut(s)	133, 238
SmlI	CTYRAG	2 cut(s)	64, 531
SmoI	CTYRAG	2 cut(s)	64, 531
SnaBI	TACGTA	1 cut(s)	262
SphI	GCATGC	1 cut(s)	234
Sse9I	AATT	5 cut(s)	540, 604, 610, 778, 784
SsiI	CCGC	3 cut(s)	111, 345, 555
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	1 cut(s)	879
StyI	CCWWGG	2 cut(s)	310, 813
TaaI	ACNGT	2 cut(s)	359, 620
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	4 cut(s)	43, 435, 715, 838
TasI	AATT	5 cut(s)	540, 604, 610, 778, 784
TauI	GCSGC	2 cut(s)	348, 558
TfiI	GAWTC	4 cut(s)	45, 432, 698, 875
TseI	GCWGC	3 cut(s)	70, 150, 198
TspDTI	ATGAA	3 cut(s)	77, 297, 789
Tth111I	GACNNNGTC	2 cut(s)	272, 329
Van91I	CCANNNNNTGG	1 cut(s)	621
XapI	RAATTY	2 cut(s)	604, 610
XceI	RCATGY	2 cut(s)	127, 234
XmiI	GTMKAC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	846
XspI	CTAG	1 cut(s)	879
Zsp2I	ATGCAT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.