Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016750

Physical Location & Seq

Genomic Coordinates Reverse (-)

79489512 .. 79492324

Gene Structure 2813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0597200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

ATGGATGAATGGAGACCCCGAAATGGGGGCGATACAGTTGCTGATGAAATTCCTAAATATGGTGAGTTGTTTTTGTTTAGAAAATTTGAATCCGGTCTTCGATTAGAATCACCCAGATTACTTTACGGTCAAGATGTATCATGGTGGATGCGCAACTTTTATTGGTCTGGGGACCCTCTTAGAAAGGGAGCTGCTTTGATTTCTTGGAAGAACTGTTGTCTGCCTAAGGATTGTGGAGGGCTTGGATTAAAAAATATTTTCACTTTGAACAGAGCTCTTCTTCTTAGGAGATGCTGGGATATGGTGACAGGTTCTTCCGATTCTTCGATATTTCTGCGGGATAGATTCTTAAAGAAGAATTTAGACACGTTCTCTTATTATCAAAGATCATCTATTTGGACCGGCTTGAAGAAGTTGTGGCCAACTCTGGTTTCTAACCTGAGATGGCAAGTGGGTAATGGCAGGAGCATCCATTTCTGGAAAGACAATTGGCTTGGAGGTTCGTTGGTGGATAGCTTGAATATCAATCCTTCTTTCTGGCCTTATCTTCGTGACCGCGTTTGTGACTATATTGTGCAGAAACATTGGGTTCTGCCACATGAGTTCCTTGAGAATTTTCCAGAAGTTTCTGAAGACATTCTAAAGACTGAAATTCCAGCTATTGACATGGATGACACTGTCCTTTGGCCTACTACCTCTGCCGAATCCTTGAATGCGGCAGAAGCTTATTCTTTTCTCACTGGTCCTAGTACATCACTTGAGTGGGGTAAGGCTATTTGGCACAAAGCGGTGCAGCCCAGGAAAAGCATTGTATGTTGGAAGATCTTCCATCTTAAGATCATGGTTGACGAGGTACTGCAGAGAAGAGGTAAGATCCTTTGCTCCCAATGCTCTTTTTGCTGCTATAATGTGGAATCGGTCTCTCACCTATTTCTAAACTGTCCTTCGCTTGGGGAGTTGTGGACATGGTTGTTTGATATTTTTCGACTGCAGCGCCCAGTTGGATTAACCTTCCAGGGAATTTTTGATTCGAATATGATGAACCAATTGCCGGTGGCATCTAAATTATTATGGAGGCTAGCAGTTTGCAATATATTTTGGTGCATTTGGACTGAACGGAACAAAATAAGGTTTGATGGCAGGGTTTTTGATTTTCGGAGATTTAAACAGTTCTTCATTAATTCTTTTAAGGAATCGGCGATGTGCTACTTTGCTCCTTGTGGTCGTATTGGTACTGCAGCCCCGGTTTATTCTCTGCTGGGAGTTTCTCCTCTTCGAGCGCGAGCCCCAAAGTTTACCCCTGTGGTTTGGGAGTCTCCGCCTCCGGGTTGGATCAAGGCGAACACGGATGGGTCTTTTTCAGATCCTGCTAGAGCTGGCTTTGGCGGGGTCTTTAGGGATTCAGATGGTCTCTTCCTGGGAGGATTTTCTTATAAGGCTGCTGTCCCAAGTGCTATTGATGTTGAGGTTCTAGCAGTTATTGAAGCAGTTGAGGTGGCAATGGTTCGACGTTGGACTCATGTTTGGTTGGAAACTGATTCTGCTTTGGTGGTGCGTTACTTCAATAAACCTAATCTGATTCCTTGGAGATGGCGTATCCCTTGGATGAACTCTTTATATAAGATTAGCCATTTTACCTTTCGGATATCGCATATTTTCAGAGAAGGAAATGCATTGGCAGATAAATTTGCTCGCTATGGTGCTTTGAATATGGGAGCAGTTTGGTGGAGGAAACTCCCTTCATCCTTTCTCCCAGAGTATGCTAGAGACTTGACTTCTAGAGTTTCTTTTCGTTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

600

Amino Acids

69.57

Weight (kDa)

9.31

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	240 - 321	8.7e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	448 - 566	3.6e-15	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016750)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07980
malus_domestica	MD05G1072100.v1.1 MD10G1082500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0262431
rosa_laevigata	RLG00000014429
rosa_multiflora	Rmu_co8450695.1_g000001 Rmu_sc0010965.1_g000002 Rmu_sc0018995.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434460 Rroxscaffold_7G00205270
rosa_rugosa	Rorug05G0597200
rosa_samantha	Rh6BG112000 Rh6CG110100 Rh6DG099700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1434
Acc16I	TGCGCA	1 cut(s)	152
AccII	CGCG	2 cut(s)	558, 1282
AciI	CCGC	6 cut(s)	337, 556, 716, 788, 1319, 1386
AclWI	GGATC	3 cut(s)	868, 1340, 1358
AcoI	YGGCCR	1 cut(s)	419
AcsI	RAATTY	7 cut(s)	48, 83, 358, 613, 651, 1020, 1685
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	3 cut(s)	751, 855, 1234
AfiI	CCNNNNNNNGG	7 cut(s)	23, 24, 25, 59, 950, 1051, 1325
AflII	CTTAAG	1 cut(s)	833
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	8 cut(s)	89, 268, 409, 520, 712, 1484, 1564, 1708
AjnI	CCWGG	3 cut(s)	797, 1014, 1416
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AleI	CACNNNNGTG	1 cut(s)	760
AluBI	AGCT	6 cut(s)	191, 275, 516, 659, 725, 1376
AluI	AGCT	6 cut(s)	191, 275, 516, 659, 725, 1376
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	5 cut(s)	7, 925, 1320, 1415, 1761
AlwI	GGATC	3 cut(s)	868, 1340, 1358
AlwNI	CAGNNNCTG	2 cut(s)	41, 1367
AoxI	GGCC	3 cut(s)	419, 539, 686
ApeKI	GCWGC	6 cut(s)	191, 793, 900, 991, 1238, 1439
ApoI	RAATTY	7 cut(s)	48, 83, 358, 613, 651, 1020, 1685
AseI	ATTAAT	1 cut(s)	1179
Asp700I	GAANNNNTTC	2 cut(s)	636, 824
AspLEI	GCGC	3 cut(s)	153, 996, 1282
AspS9I	GGNCC	3 cut(s)	172, 399, 743
AsuC2I	CCSGG	2 cut(s)	1244, 1326
AsuHPI	GGTGA	4 cut(s)	74, 102, 316, 917
AsuII	TTCGAA	1 cut(s)	1031
AsuNHI	GCTAGC	1 cut(s)	1078
AvaII	GGWCC	3 cut(s)	172, 399, 743
AxyI	CCTNAGG	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	421
BanII	GRGCYC	2 cut(s)	277, 1288
BbsI	GAAGAC	2 cut(s)	89, 639
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	6 cut(s)	178, 805, 887, 1003, 1250, 1426
BccI	CCATC	6 cut(s)	438, 837, 1130, 1343, 1400, 1584
BcgI	CGANNNNNNTGC	4 cut(s)	20, 54, 316, 350
BciT130I	CCWGG	3 cut(s)	799, 1016, 1418
BciVI	GTATCC	1 cut(s)	1607
BcnI	CCSGG	2 cut(s)	1244, 1326
BcoDI	GTCTC	5 cut(s)	7, 925, 1320, 1415, 1761
BfaI	CTAG	6 cut(s)	747, 1079, 1371, 1472, 1764, 1779
BfmI	CTRYAG	3 cut(s)	857, 989, 1236
BfoI	RGCGCY	1 cut(s)	997
BfrI	CTTAAG	1 cut(s)	833
BfuI	GTATCC	1 cut(s)	1607
BglII	AGATCT	1 cut(s)	822
BisI	GCNGC	7 cut(s)	192, 717, 794, 901, 992, 1239, 1440
BlsI	GCNGC	7 cut(s)	193, 718, 795, 902, 993, 1240, 1441
Bme1390I	CCNGG	5 cut(s)	799, 1016, 1244, 1326, 1418
Bme18I	GGWCC	3 cut(s)	172, 399, 743
BmgT120I	GGNCC	3 cut(s)	172, 399, 743
BmiI	GGNNCC	2 cut(s)	173, 174
BmrFI	CCNGG	5 cut(s)	799, 1016, 1244, 1326, 1418
BmrI	ACTGGG	1 cut(s)	992
BmsI	GCATC	4 cut(s)	138, 281, 477, 1067
BmtI	GCTAGC	1 cut(s)	1082
BmuI	ACTGGG	1 cut(s)	992
BpiI	GAAGAC	2 cut(s)	89, 639
Bpu14I	TTCGAA	1 cut(s)	1031
BpuEI	CTTGAG	2 cut(s)	629, 779
BpuMI	CCSGG	2 cut(s)	1244, 1326
BsaBI	GATNNNNATC	1 cut(s)	106
BsaI	GGTCTC	3 cut(s)	7, 925, 1415
BsaJI	CCNNGG	6 cut(s)	797, 1015, 1242, 1417, 1583, 1601
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	1579, 1609
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 24, 25, 59, 950, 1051, 1325
Bse118I	RCCGGY	2 cut(s)	401, 1051
Bse1I	ACTGG	2 cut(s)	745, 998
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	1506
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	3 cut(s)	799, 1016, 1418
BseDI	CCNNGG	6 cut(s)	797, 1015, 1242, 1417, 1583, 1601
BseGI	GGATG	7 cut(s)	10, 153, 468, 676, 1354, 1611, 1742
BseJI	GATNNNNATC	1 cut(s)	106
BseLI	CCNNNNNNNGG	7 cut(s)	23, 24, 25, 59, 950, 1051, 1325
BseMI	GCAATG	1 cut(s)	1506
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	745, 998
BseRI	GAGGAG	1 cut(s)	1260
BseXI	GCAGC	6 cut(s)	178, 805, 887, 1003, 1250, 1426
BseYI	CCCAGC	2 cut(s)	294, 1258
BsgI	GTGCAG	2 cut(s)	596, 812
Bsh1236I	CGCG	2 cut(s)	558, 1282
BshFI	GGCC	3 cut(s)	421, 541, 688
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	5 cut(s)	93, 402, 1052, 1244, 1325
BslFI	GGGAC	2 cut(s)	185, 1430
BslI	CCNNNNNNNGG	7 cut(s)	23, 24, 25, 59, 950, 1051, 1325
BsmAI	GTCTC	5 cut(s)	7, 925, 1320, 1415, 1761
BsmFI	GGGAC	2 cut(s)	185, 1430
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	3 cut(s)	421, 541, 688
Bso31I	GGTCTC	3 cut(s)	7, 925, 1415
Bsp119I	TTCGAA	1 cut(s)	1031
Bsp1286I	GDGCHC	2 cut(s)	277, 1288
Bsp143I	GATC	6 cut(s)	386, 822, 837, 873, 1332, 1363
BspACI	CCGC	6 cut(s)	337, 556, 716, 788, 1319, 1386
BspANI	GGCC	3 cut(s)	421, 541, 688
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	2 cut(s)	558, 1282
BspLI	GGNNCC	2 cut(s)	173, 174
BspMAI	CTGCAG	3 cut(s)	861, 993, 1240
BspOI	GCTAGC	1 cut(s)	1082
BspPI	GGATC	3 cut(s)	868, 1340, 1358
BspQI	GCTCTTC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	1031
BspTI	CTTAAG	1 cut(s)	833
BspTNI	GGTCTC	3 cut(s)	7, 925, 1415
BsrDI	GCAATG	1 cut(s)	1506
BsrFI	RCCGGY	2 cut(s)	401, 1051
BsrI	ACTGG	2 cut(s)	745, 998
BssAI	RCCGGY	2 cut(s)	401, 1051
BssECI	CCNNGG	6 cut(s)	797, 1015, 1242, 1417, 1583, 1601
BssMI	GATC	6 cut(s)	386, 822, 837, 873, 1332, 1363
BssT1I	CCWWGG	2 cut(s)	1583, 1601
Bst2UI	CCWGG	3 cut(s)	799, 1016, 1418
Bst4CI	ACNGT	6 cut(s)	37, 128, 215, 679, 941, 1170
Bst6I	CTCTTC	4 cut(s)	282, 859, 1278, 1418
BstAFI	CTTAAG	1 cut(s)	833
BstBI	TTCGAA	1 cut(s)	1031
BstC8I	GCNNGC	4 cut(s)	1080, 1284, 1378, 1693
BstDEI	CTNAG	5 cut(s)	179, 225, 284, 440, 1800
BstF5I	GGATG	7 cut(s)	10, 153, 468, 676, 1354, 1611, 1742
BstFNI	CGCG	2 cut(s)	558, 1282
BstH2I	RGCGCY	1 cut(s)	997
BstHHI	GCGC	3 cut(s)	153, 996, 1282
BstKTI	GATC	6 cut(s)	389, 825, 840, 876, 1335, 1366
BstMAI	GTCTC	5 cut(s)	7, 925, 1320, 1415, 1761
BstMBI	GATC	6 cut(s)	386, 822, 837, 873, 1332, 1363
BstMWI	GCNNNNNNNGC	3 cut(s)	722, 888, 897
BstNI	CCWGG	3 cut(s)	799, 1016, 1418
BstSCI	CCNGG	5 cut(s)	797, 1014, 1242, 1324, 1416
BstSFI	CTRYAG	3 cut(s)	857, 989, 1236
BstUI	CGCG	2 cut(s)	558, 1282
BstV1I	GCAGC	6 cut(s)	178, 805, 887, 1003, 1250, 1426
BstV2I	GAAGAC	2 cut(s)	89, 639
BstX2I	RGATCY	3 cut(s)	822, 873, 1363
BstYI	RGATCY	3 cut(s)	822, 873, 1363
Bsu36I	CCTNAGG	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	1607
BsuRI	GGCC	3 cut(s)	421, 541, 688
BtgZI	GCGATG	1 cut(s)	1214
BtsCI	GGATG	7 cut(s)	10, 153, 468, 676, 1354, 1611, 1742
BtsIMutI	CAGTG	2 cut(s)	675, 738
Cac8I	GCNNGC	4 cut(s)	1080, 1284, 1378, 1693
CaiI	CAGNNNCTG	2 cut(s)	41, 1367
CfoI	GCGC	3 cut(s)	153, 996, 1282
Cfr10I	RCCGGY	2 cut(s)	401, 1051
Cfr13I	GGNCC	3 cut(s)	172, 399, 743
Csp6I	GTAC	3 cut(s)	750, 854, 1233
CviAII	CATG	6 cut(s)	141, 599, 667, 841, 966, 1520
CviQI	GTAC	3 cut(s)	750, 854, 1233
DdeI	CTNAG	5 cut(s)	179, 225, 284, 440, 1800
DpnI	GATC	6 cut(s)	388, 824, 839, 875, 1334, 1365
DpnII	GATC	6 cut(s)	386, 822, 837, 873, 1332, 1363
DraI	TTTAAA	1 cut(s)	1165
EaeI	YGGCCR	1 cut(s)	419
Eam1104I	CTCTTC	4 cut(s)	282, 859, 1278, 1418
EarI	CTCTTC	4 cut(s)	282, 859, 1278, 1418
EciI	GGCGGA	1 cut(s)	1308
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	1583, 1601
Eco24I	GRGCYC	2 cut(s)	277, 1288
Eco31I	GGTCTC	3 cut(s)	7, 925, 1415
Eco32I	GATATC	1 cut(s)	1647
Eco47I	GGWCC	3 cut(s)	172, 399, 743
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	651
Eco81I	CCTNAGG	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	3 cut(s)	797, 1014, 1416
EcoRV	GATATC	1 cut(s)	1647
EcoT14I	CCWWGG	2 cut(s)	1583, 1601
EcoT22I	ATGCAT	1 cut(s)	1675
EcoT38I	GRGCYC	2 cut(s)	277, 1288
ErhI	CCWWGG	2 cut(s)	1583, 1601
FaeI	CATG	6 cut(s)	144, 602, 670, 844, 969, 1523
FaqI	GGGAC	2 cut(s)	185, 1430
FatI	CATG	6 cut(s)	140, 598, 666, 840, 965, 1519
FauI	CCCGC	2 cut(s)	330, 1379
Fnu4HI	GCNGC	7 cut(s)	192, 717, 794, 901, 992, 1239, 1440
FokI	GGATG	7 cut(s)	17, 160, 455, 683, 1361, 1618, 1729
FriOI	GRGCYC	2 cut(s)	277, 1288
Fsp4HI	GCNGC	7 cut(s)	192, 717, 794, 901, 992, 1239, 1440
FspBI	CTAG	6 cut(s)	747, 1079, 1371, 1472, 1764, 1779
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	3 cut(s)	152, 995, 1281
GluI	GCNGC	7 cut(s)	192, 717, 794, 901, 992, 1239, 1440
GsaI	CCCAGC	2 cut(s)	298, 1262
HaeII	RGCGCY	1 cut(s)	997
HaeIII	GGCC	3 cut(s)	421, 541, 688
HapII	CCGG	5 cut(s)	93, 402, 1052, 1244, 1325
HhaI	GCGC	3 cut(s)	153, 996, 1282
Hin1II	CATG	6 cut(s)	144, 602, 670, 844, 969, 1523
Hin6I	GCGC	3 cut(s)	151, 994, 1280
HinP1I	GCGC	3 cut(s)	151, 994, 1280
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	723
HpaII	CCGG	5 cut(s)	93, 402, 1052, 1244, 1325
HphI	GGTGA	4 cut(s)	74, 102, 316, 917
Hpy166II	GTNNAC	3 cut(s)	847, 963, 1296
Hpy188I	TCNGA	8 cut(s)	319, 631, 1158, 1363, 1405, 1578, 1644, 1661
Hpy188III	TCNNGA	5 cut(s)	131, 478, 551, 620, 1779
Hpy8I	GTNNAC	3 cut(s)	847, 963, 1296
Hpy99I	CGWCG	1 cut(s)	1512
HpyAV	CCTTC	5 cut(s)	540, 954, 1021, 1658, 1749
HpyCH4III	ACNGT	6 cut(s)	37, 128, 215, 679, 941, 1170
HpyCH4IV	ACGT	2 cut(s)	368, 1510
HpyCH4V	TGCA	8 cut(s)	577, 793, 859, 991, 1089, 1104, 1238, 1673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	722, 888, 897
HpyF3I	CTNAG	5 cut(s)	179, 225, 284, 440, 1800
HpySE526I	ACGT	2 cut(s)	368, 1510
Hsp92II	CATG	6 cut(s)	144, 602, 670, 844, 969, 1523
HspAI	GCGC	3 cut(s)	151, 994, 1280
KflI	GGGWCCC	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	386, 822, 837, 873, 1332, 1363
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	5 cut(s)	188, 465, 887, 1219, 1715
Lsp1109I	GCAGC	6 cut(s)	178, 805, 887, 1003, 1250, 1426
LweI	GCATC	4 cut(s)	138, 281, 477, 1067
MaeI	CTAG	6 cut(s)	747, 1079, 1371, 1472, 1764, 1779
MaeII	ACGT	2 cut(s)	368, 1510
MaeIII	GTNAC	4 cut(s)	304, 551, 563, 1556
MalI	GATC	6 cut(s)	388, 824, 839, 875, 1334, 1365
MboI	GATC	6 cut(s)	386, 822, 837, 873, 1332, 1363
MfeI	CAATTG	2 cut(s)	487, 1046
MflI	RGATCY	3 cut(s)	822, 873, 1363
MhlI	GDGCHC	2 cut(s)	277, 1288
MlsI	TGGCCA	1 cut(s)	421
MluNI	TGGCCA	1 cut(s)	421
MlyI	GAGTC	2 cut(s)	1322, 1510
MmeI	TCCRAC	5 cut(s)	797, 982, 1310, 1493, 1509
Mox20I	TGGCCA	1 cut(s)	421
Mph1103I	ATGCAT	1 cut(s)	1675
MroXI	GAANNNNTTC	2 cut(s)	636, 824
MscI	TGGCCA	1 cut(s)	421
MseI	TTAA	7 cut(s)	248, 350, 834, 1007, 1164, 1179, 1188
MslI	CAYNNNNRTG	1 cut(s)	760
Msp20I	TGGCCA	1 cut(s)	421
MspCI	CTTAAG	1 cut(s)	833
MspI	CCGG	5 cut(s)	93, 402, 1052, 1244, 1325
MspR9I	CCNGG	5 cut(s)	799, 1016, 1244, 1326, 1418
MunI	CAATTG	2 cut(s)	487, 1046
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	3 cut(s)	799, 1016, 1418
MvnI	CGCG	2 cut(s)	558, 1282
MwoI	GCNNNNNNNGC	3 cut(s)	722, 888, 897
NciI	CCSGG	2 cut(s)	1244, 1326
NdeII	GATC	6 cut(s)	386, 822, 837, 873, 1332, 1363
NheI	GCTAGC	1 cut(s)	1078
NlaIII	CATG	6 cut(s)	144, 602, 670, 844, 969, 1523
NlaIV	GGNNCC	2 cut(s)	173, 174
NmuCI	GTSAC	3 cut(s)	304, 551, 563
NsbI	TGCGCA	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	1675
NspV	TTCGAA	1 cut(s)	1031
OliI	CACNNNNGTG	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	282
PctI	GAATGC	1 cut(s)	718
PdmI	GAANNNNTTC	2 cut(s)	636, 824
PflFI	GACNNNGTC	1 cut(s)	677
PkrI	GCNGC	7 cut(s)	193, 718, 795, 902, 993, 1240, 1441
PleI	GAGTC	2 cut(s)	1321, 1510
PpsI	GAGTC	2 cut(s)	1321, 1510
PpuMI	RGGWCCY	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	1179
PsiI	TTATAA	1 cut(s)	1434
Psp124BI	GAGCTC	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	172
Psp6I	CCWGG	3 cut(s)	797, 1014, 1416
PspFI	CCCAGC	2 cut(s)	294, 1258
PspGI	CCWGG	3 cut(s)	797, 1014, 1416
PspN4I	GGNNCC	2 cut(s)	173, 174
PspPI	GGNCC	3 cut(s)	172, 399, 743
PspPPI	RGGWCCY	1 cut(s)	172
PstI	CTGCAG	3 cut(s)	861, 993, 1240
PstNI	CAGNNNCTG	2 cut(s)	41, 1367
PsuI	RGATCY	3 cut(s)	822, 873, 1363
PsyI	GACNNNGTC	1 cut(s)	677
RsaI	GTAC	3 cut(s)	751, 855, 1234
RsaNI	GTAC	3 cut(s)	750, 854, 1233
RseI	CAYNNNNRTG	1 cut(s)	760
SacI	GAGCTC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	7 cut(s)	248, 350, 834, 1007, 1164, 1179, 1188
SatI	GCNGC	7 cut(s)	192, 717, 794, 901, 992, 1239, 1440
Sau3AI	GATC	6 cut(s)	386, 822, 837, 873, 1332, 1363
Sau96I	GGNCC	3 cut(s)	172, 399, 743
SchI	GAGTC	2 cut(s)	1322, 1510
ScrFI	CCNGG	5 cut(s)	799, 1016, 1244, 1326, 1418
SduI	GDGCHC	2 cut(s)	277, 1288
SfaNI	GCATC	4 cut(s)	138, 281, 477, 1067
SfcI	CTRYAG	3 cut(s)	857, 989, 1236
SfuI	TTCGAA	1 cut(s)	1031
SinI	GGWCC	3 cut(s)	172, 399, 743
SmiMI	CAYNNNNRTG	1 cut(s)	760
SmlI	CTYRAG	3 cut(s)	608, 758, 833
SmoI	CTYRAG	3 cut(s)	608, 758, 833
SsiI	CCGC	6 cut(s)	337, 556, 716, 788, 1319, 1386
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	6 cut(s)	747, 1079, 1371, 1472, 1764, 1779
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	5 cut(s)	797, 1014, 1242, 1324, 1416
StyI	CCWWGG	2 cut(s)	1583, 1601
TaaI	ACNGT	6 cut(s)	37, 128, 215, 679, 941, 1170
TaiI	ACGT	2 cut(s)	371, 1513
TaqI	TCGA	6 cut(s)	100, 326, 985, 1031, 1276, 1507
TaqII	GACCGA	1 cut(s)	907
TatI	WGTACW	1 cut(s)	749
TauI	GCSGC	1 cut(s)	719
Tru1I	TTAA	7 cut(s)	248, 350, 834, 1007, 1164, 1179, 1188
Tru9I	TTAA	7 cut(s)	248, 350, 834, 1007, 1164, 1179, 1188
TscAI	CASTG	2 cut(s)	682, 745
TseFI	GTSAC	3 cut(s)	304, 551, 563
TseI	GCWGC	6 cut(s)	191, 793, 900, 991, 1238, 1439
Tsp45I	GTSAC	3 cut(s)	304, 551, 563
TspDTI	ATGAA	6 cut(s)	21, 60, 1055, 1165, 1622, 1731
TspGWI	ACGGA	2 cut(s)	1132, 1361
TspRI	CASTG	2 cut(s)	682, 745
Tth111I	GACNNNGTC	1 cut(s)	677
Vha464I	CTTAAG	1 cut(s)	833
VpaK11BI	GGWCC	3 cut(s)	172, 399, 743
VspI	ATTAAT	1 cut(s)	1179
XapI	RAATTY	7 cut(s)	48, 83, 358, 613, 651, 1020, 1685
XbaI	TCTAGA	1 cut(s)	1778
XmnI	GAANNNNTTC	2 cut(s)	636, 824
XspI	CTAG	6 cut(s)	747, 1079, 1371, 1472, 1764, 1779
Zsp2I	ATGCAT	1 cut(s)	1675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.