Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8450695.1

Orthogroup ID

OG0016750

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 828

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8450695.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

gattttgtagctcgctacgtaatgcacgaagacaatgaagctggttttgaatgcaacatttgtcttgccttagctgaggacccagtcataacactctgtggtcacctttactgctggtcttgtttggtcaaatggctcttcagttcacagtattccaacaacgagtgtccgatttgcaagtccgatatcgagttcagcaaattaatcttttcttatggaaagttgaaatcgtccgaatccaaaccgatatcttggtttgaatgtaacatttgctctggattagctcaagatccaattataacactctgtggccacctctattgttggccttgcatctataaatggctttccaagtggaattcaaattccaattgttgggtttgtaatgctgtcatagaggagaacaaattgatccctctttatggaaaagggataaaatcgtcatcacatgattcggactcaagctttcgagctgttgcacctgcaggcgctggcagtcttgcttcaactaccaaggtgaactgttttgtacggtgtgcattcgatgctagccagaccttgtttcggtttggaagatataccatggagattttcatgacaagggtgttgccagtagttgcaattcttttgatgtttcatccctccatgccgagggaaaggaaaaacgatttggtggagaaggttttcgggttgagtttgtggtgtttgttgattctagtcgtttgggatatcctcaagggaaaaattagacgacatcacaaattggaacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

257

Amino Acids

29.32

Weight (kDa)

8.11

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016750)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07980
malus_domestica	MD05G1072100.v1.1 MD10G1082500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0262431
rosa_laevigata	RLG00000014429
rosa_multiflora	Rmu_co8450695.1_g000001 Rmu_sc0010965.1_g000002 Rmu_sc0018995.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434460 Rroxscaffold_7G00205270
rosa_rugosa	Rorug05G0597200
rosa_samantha	Rh6BG112000 Rh6CG110100 Rh6DG099700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	375
AclWI	GGATC	2 cut(s)	284, 406
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	358, 364
AcuI	CTGAAG	1 cut(s)	124
AdeI	CACNNNGTG	2 cut(s)	98, 308
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	4 cut(s)	375, 422, 564, 651
AgsI	TTSAA	5 cut(s)	50, 226, 260, 363, 507
AjuI	GAANNNNNNNTTGG	2 cut(s)	653, 685
AluBI	AGCT	6 cut(s)	11, 41, 74, 284, 465, 473
AluI	AGCT	6 cut(s)	11, 41, 74, 284, 465, 473
AlwI	GGATC	2 cut(s)	284, 406
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	2 cut(s)	310, 326
ApoI	RAATTY	2 cut(s)	358, 364
AseI	ATTAAT	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	683
AspLEI	GCGC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	95, 529
AsuNHI	GCTAGC	1 cut(s)	548
AvaII	GGWCC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	75
BfaI	CTAG	2 cut(s)	549, 716
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	490
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	342, 535
BmtI	GCTAGC	1 cut(s)	552
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	36
Bpu10I	CCTNAGC	2 cut(s)	70, 75
BpuEI	CTTGAG	3 cut(s)	270, 445, 719
BsaAI	YACGTR	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	513, 582, 650
Bsc4I	CCNNNNNNNGG	4 cut(s)	375, 422, 564, 651
Bse1I	ACTGG	2 cut(s)	83, 611
BseDI	CCNNGG	3 cut(s)	513, 582, 650
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	4 cut(s)	375, 422, 564, 651
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	83, 611
BseRI	GAGGAG	1 cut(s)	413
BshFI	GGCC	2 cut(s)	312, 328
BslI	CCNNNNNNNGG	4 cut(s)	375, 422, 564, 651
BsmI	GAATGC	2 cut(s)	56, 539
BsnI	GGCC	2 cut(s)	312, 328
Bsp143I	GATC	2 cut(s)	289, 411
Bsp19I	CCATGG	1 cut(s)	582
BspANI	GGCC	2 cut(s)	312, 328
BspCNI	CTCAG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	490
BspOI	GCTAGC	1 cut(s)	552
BspPI	GGATC	2 cut(s)	284, 406
BspQI	GCTCTTC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	83, 611
BssECI	CCNNGG	3 cut(s)	513, 582, 650
BssMI	GATC	2 cut(s)	289, 411
BssT1I	CCWWGG	2 cut(s)	513, 582
Bst4CI	ACNGT	3 cut(s)	150, 524, 534
Bst6I	CTCTTC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	4 cut(s)	13, 487, 493, 550
BstDEI	CTNAG	2 cut(s)	70, 75
BstDSI	CCRYGG	1 cut(s)	582
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	637
BstH2I	RGCGCY	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	2 cut(s)	292, 414
BstMBI	GATC	2 cut(s)	289, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstPI	GGTNACC	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	483
BstSNI	TACGTA	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	312, 328
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	1 cut(s)	637
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	4 cut(s)	13, 487, 493, 550
CaiI	CAGNNNCTG	1 cut(s)	491
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	530
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	4 cut(s)	449, 583, 595, 646
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	2 cut(s)	70, 75
DpnI	GATC	2 cut(s)	291, 413
DpnII	GATC	2 cut(s)	289, 411
DraIII	CACNNNGTG	2 cut(s)	98, 308
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco105I	TACGTA	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	513, 582
Eco32I	GATATC	3 cut(s)	187, 249, 730
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	124
Eco91I	GGTNACC	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	358
EcoRV	GATATC	3 cut(s)	187, 249, 730
EcoT14I	CCWWGG	2 cut(s)	513, 582
ErhI	CCWWGG	2 cut(s)	513, 582
FaeI	CATG	4 cut(s)	452, 586, 598, 649
FatI	CATG	4 cut(s)	448, 582, 594, 645
FokI	GGATG	1 cut(s)	624
FspBI	CTAG	2 cut(s)	549, 716
GlaI	GCGC	1 cut(s)	490
HaeII	RGCGCY	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	312, 328
HhaI	GCGC	1 cut(s)	491
Hin1II	CATG	4 cut(s)	452, 586, 598, 649
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	4 cut(s)	236, 452, 458, 712
HphI	GGTGA	2 cut(s)	95, 529
Hpy166II	GTNNAC	2 cut(s)	146, 520
Hpy188I	TCNGA	4 cut(s)	171, 184, 235, 457
Hpy188III	TCNNGA	3 cut(s)	276, 287, 595
Hpy8I	GTNNAC	2 cut(s)	146, 520
HpyAV	CCTTC	1 cut(s)	673
HpyCH4III	ACNGT	3 cut(s)	150, 524, 534
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	8 cut(s)	25, 54, 177, 333, 479, 485, 539, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	2 cut(s)	70, 75
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	452, 586, 598, 649
HspAI	GCGC	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	289, 411
LguI	GCTCTTC	1 cut(s)	143
LpnPI	CCDG	9 cut(s)	27, 96, 100, 261, 471, 477, 495, 566, 624
LweI	GCATC	2 cut(s)	342, 535
MaeI	CTAG	2 cut(s)	549, 716
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	101, 263
MalI	GATC	2 cut(s)	291, 413
MboI	GATC	2 cut(s)	289, 411
MboII	GAAGA	3 cut(s)	41, 130, 585
MfeI	CAATTG	1 cut(s)	370
MflI	RGATCY	1 cut(s)	289
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	9 cut(s)	200, 294, 358, 364, 370, 407, 621, 744, 761
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	70, 326, 391, 426, 645, 652, 743
Mox20I	TGGCCA	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	312
MunI	CAATTG	1 cut(s)	370
Mva1269I	GAATGC	2 cut(s)	56, 539
MwoI	GCNNNNNNNGC	1 cut(s)	545
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	2 cut(s)	289, 411
NheI	GCTAGC	1 cut(s)	548
NlaIII	CATG	4 cut(s)	452, 586, 598, 649
NlaIV	GGNNCC	1 cut(s)	81
NmeAIII	GCCGAG	1 cut(s)	675
NmuCI	GTSAC	1 cut(s)	101
PagI	TCATGA	1 cut(s)	594
PaqCI	CACCTGC	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	2 cut(s)	56, 539
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	3 cut(s)	236, 452, 712
PflFI	GACNNNGTC	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	375
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Ppu21I	YACGTR	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	79
PshBI	ATTAAT	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	79
PspEI	GGTNACC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	79
PspPPI	RGGWCCY	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	289, 411
Sau96I	GGNCC	1 cut(s)	79
SbfI	CCTGCAGG	1 cut(s)	487
SchI	GAGTC	1 cut(s)	452
SdaI	CCTGCAGG	1 cut(s)	487
SfaNI	GCATC	2 cut(s)	342, 535
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	79
SmlI	CTYRAG	3 cut(s)	285, 460, 734
SmoI	CTYRAG	3 cut(s)	285, 460, 734
SnaBI	TACGTA	1 cut(s)	19
Sse8387I	CCTGCAGG	1 cut(s)	487
Sse9I	AATT	9 cut(s)	200, 294, 358, 364, 370, 407, 621, 744, 761
SspMI	CTAG	2 cut(s)	549, 716
StyI	CCWWGG	2 cut(s)	513, 582
TaaI	ACNGT	3 cut(s)	150, 524, 534
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	189, 469, 543
TasI	AATT	9 cut(s)	200, 294, 358, 364, 370, 407, 621, 744, 761
TfiI	GAWTC	3 cut(s)	236, 452, 712
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	51, 583, 626
Tth111I	GACNNNGTC	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	79
VspI	ATTAAT	1 cut(s)	203
XapI	RAATTY	2 cut(s)	358, 364
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	2 cut(s)	549, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.