Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0016750

Physical Location & Seq

Genomic Coordinates Forward (+)

12125423 .. 12126034

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1082500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAAATGGCTTTTCAAGTCACATTCCAACAATGAGTGCCCAATTTGTAGAACTGGTGTAGAGTTCAGCCAACTCATATTTTCTTACGGAAAATCGAAACTTCAATCGGATCCAACATCTGGATTCAAATGCAACATTTGCTCCGAATTAGCCCGAGACCCGATTGTCACACTTTGTGGCCATCTTTATTGTTGGCCTTGTTTGAACAAATGGCTTAACAAATGGAATTCAAATTCCAACTGCTGGGTTTGCAAGGCTGTTATAGAGGAGAAAACATTGGTCCCTCTCTATGGAAAAGGGATCGAATCACACGGTGCCGCAGGTCTGGGATCATGGTCTGTAAGTCTTGAAGCCAACTGTTTTGTTCAACGTGTGTTTGCTACGATCGGAGCTTTGTTTCGGTTTGGTCGACGTACCATGGAAGTTTGTATGACAAGGGTGTTACCAGTTATAGCAATTCTCGTAATGTTGCATCCCTCTTTGCCAAGGGAAAGAAAGAATGATTTGGTGGAAAAGGTTTTGGTTTGGAGCTTGTGGTCTTGGTTCATTTTAGTCATTTGGGATGTCCTCATCAATGGGAACATTAAACGACATAAAAAATTGATACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

204

Amino Acids

23.26

Weight (kDa)

9.27

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	43 - 90	7e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	43 - 85	4.3e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	43 - 84	2e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	43 - 85	6.5e-06	Ring finger domain
zf-C3HC4	PF00097	44 - 84	9.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	44 - 78	1.4e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016750)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07980
malus_domestica	MD05G1072100.v1.1 MD10G1082500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0262431
rosa_laevigata	RLG00000014429
rosa_multiflora	Rmu_co8450695.1_g000001 Rmu_sc0010965.1_g000002 Rmu_sc0018995.1_g000001
rosa_roxburghii	Rroxscaffold_177G00434460 Rroxscaffold_7G00205270
rosa_rugosa	Rorug05G0597200
rosa_samantha	Rh6BG112000 Rh6CG110100 Rh6DG099700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	314
AccB7I	CCANNNNNTGG	2 cut(s)	119, 243
AccI	GTMKAC	1 cut(s)	409
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	4 cut(s)	104, 117, 308, 337
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	226, 232
AdeI	CACNNNGTG	2 cut(s)	176, 314
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	3 cut(s)	119, 243, 290
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	7 cut(s)	16, 104, 127, 205, 231, 350, 368
AluBI	AGCT	2 cut(s)	392, 531
AluI	AGCT	2 cut(s)	392, 531
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	4 cut(s)	104, 117, 308, 337
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	2 cut(s)	178, 194
ApoI	RAATTY	2 cut(s)	226, 232
AspS9I	GGNCC	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	314
BccI	CCATC	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	3 cut(s)	111, 282, 316
BmsI	GCATC	1 cut(s)	481
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	417, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 243, 290
Bse1I	ACTGG	2 cut(s)	58, 446
BseDI	CCNNGG	2 cut(s)	417, 485
BseGI	GGATG	2 cut(s)	472, 568
BseLI	CCNNNNNNNGG	3 cut(s)	119, 243, 290
BseNI	ACTGG	2 cut(s)	58, 446
BseRI	GAGGAG	1 cut(s)	281
BseSI	GKGCMC	1 cut(s)	41
BseYI	CCCAGC	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	180, 196
BshNI	GGYRCC	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	3 cut(s)	119, 243, 290
BsmAI	GTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	180, 196
Bso31I	GGTCTC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	109, 300, 329, 384
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	2 cut(s)	180, 196
BspLI	GGNNCC	3 cut(s)	111, 282, 316
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	4 cut(s)	104, 117, 308, 337
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	58, 446
BssECI	CCNNGG	2 cut(s)	417, 485
BssMI	GATC	4 cut(s)	109, 300, 329, 384
BssT1I	CCWWGG	2 cut(s)	417, 485
Bst4CI	ACNGT	2 cut(s)	314, 359
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	472, 568
BstKTI	GATC	4 cut(s)	112, 303, 332, 387
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	4 cut(s)	109, 300, 329, 384
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 249
BstSLI	GKGCMC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	180, 196
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	472, 568
BveI	ACCTGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	2 cut(s)	333, 418
CviQI	GTAC	1 cut(s)	414
DpnI	GATC	4 cut(s)	111, 302, 331, 386
DpnII	GATC	4 cut(s)	109, 300, 329, 384
DraIII	CACNNNGTG	2 cut(s)	176, 314
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	417, 485
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	417, 485
ErhI	CCWWGG	2 cut(s)	417, 485
FaeI	CATG	2 cut(s)	336, 421
FaiI	YATR	8 cut(s)	77, 263, 291, 334, 419, 431, 452, 594
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	2 cut(s)	332, 417
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	2 cut(s)	459, 575
Fsp4HI	GCNGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	318
GsaI	CCCAGC	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	180, 196
Hin1II	CATG	2 cut(s)	336, 421
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HinfI	GANTC	2 cut(s)	123, 305
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	3 cut(s)	109, 145, 389
Hpy188III	TCNNGA	2 cut(s)	120, 347
Hpy8I	GTNNAC	1 cut(s)	410
Hpy99I	CGWCG	1 cut(s)	414
HpyCH4III	ACNGT	2 cut(s)	314, 359
HpyCH4IV	ACGT	2 cut(s)	370, 412
HpyCH4V	TGCA	3 cut(s)	132, 252, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 249
HpySE526I	ACGT	2 cut(s)	370, 412
Hsp92II	CATG	2 cut(s)	336, 421
Kzo9I	GATC	4 cut(s)	109, 300, 329, 384
LmnI	GCTCC	3 cut(s)	146, 389, 528
LpnPI	CCDG	6 cut(s)	39, 105, 229, 306, 311, 459
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	2 cut(s)	370, 412
MaeIII	GTNAC	3 cut(s)	18, 166, 441
MalI	GATC	4 cut(s)	111, 302, 331, 386
MboI	GATC	4 cut(s)	109, 300, 329, 384
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	6 cut(s)	42, 146, 226, 232, 456, 599
MluNI	TGGCCA	1 cut(s)	180
MmeI	TCCRAC	3 cut(s)	51, 137, 261
MnlI	CCTC	4 cut(s)	259, 294, 487, 578
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	3 cut(s)	216, 585, 610
Msp20I	TGGCCA	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	138, 249
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	109, 300, 329, 384
NlaIII	CATG	2 cut(s)	336, 421
NlaIV	GGNNCC	3 cut(s)	111, 282, 316
NmuCI	GTSAC	2 cut(s)	18, 166
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	123, 305
PflMI	CCANNNNNTGG	2 cut(s)	119, 243
PkrI	GCNGC	1 cut(s)	319
Ple19I	CGATCG	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	243
PspN4I	GGNNCC	3 cut(s)	111, 282, 316
PspPI	GGNCC	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	109
PvuI	CGATCG	1 cut(s)	387
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SalI	GTCGAC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	216, 585, 610
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	4 cut(s)	109, 300, 329, 384
Sau96I	GGNCC	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	325, 373, 394, 415, 519, 533
SfaNI	GCATC	1 cut(s)	481
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	6 cut(s)	42, 146, 226, 232, 456, 599
SsiI	CCGC	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	417, 485
TaaI	ACNGT	2 cut(s)	314, 359
TaiI	ACGT	2 cut(s)	373, 415
TaqI	TCGA	3 cut(s)	95, 303, 409
TasI	AATT	6 cut(s)	42, 146, 226, 232, 456, 599
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	123, 305
Tru1I	TTAA	3 cut(s)	216, 585, 610
Tru9I	TTAA	3 cut(s)	216, 585, 610
TseFI	GTSAC	2 cut(s)	18, 166
Tsp45I	GTSAC	2 cut(s)	18, 166
TspDTI	ATGAA	2 cut(s)	17, 535
TspGWI	ACGGA	1 cut(s)	102
Van91I	CCANNNNNTGG	2 cut(s)	119, 243
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	2 cut(s)	226, 232
XmiI	GTMKAC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.