Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015932

Physical Location & Seq

Genomic Coordinates Forward (+)

11468499 .. 11470477

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCAGTGGCATCTTCCTTTCCCTGCATCAAAATCTCAACCTGCTCATCATCCCCATCTTGTTCATATTCTTCTTCCTCCTCTAGTAATTCTTTTATGTTCTCTTCTTCACCTAAGCCCTGTTATGTAAAGACCACCACCATCAGGAGCTCCCAAACTGAAGGCCCTATAAGAAGACCTGCTGCTCCTTCAGTCAGAGAACCCTCTCCACCTACTCTCAAGCCCCCAACACCTCCCTCCAAGTCCCCTTCGCCGCCACAGCCTCAGCCGGCGGCTCCGGTTTCGGGGGTAACAATGGTGGAGGATAAGAATGTGGTAACTCTTGAGTTTCAGAGGCAGAAGGCTAAGGAGATTCAGGACTACTTCAAGCAGAAGAAGCTTGAGGAAGCGAATCAGGGTCCCTTCTTTGGCTTTGTTGGCAAGAATGAGATTAGCAATGGAAGATGGGCAATGTTTGGTTTTGCTGTTGGGATGCTAACAGAATATGCAACTGGCTCAGACTTTGTTGATCAAGTAAAGATCCTTCTCTCCAATTTTGGGATTGTAGATCTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

186

Amino Acids

20.03

Weight (kDa)

8.9

Isoelectric Point (pI)

68.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34000
fragaria_vesca	FvH4_2g13070
malus_domestica	MD05G1032800.v1.1 MD10G1033800.v1.1
prunus_persica	Prupe.8G039900_v2.0.a1
pyrus_communis	pycom05g02380 pycom10g02230
rosa_chinensis	RchiOBHm_Chr6g0274331
rosa_laevigata	RLG00000013552
rosa_roxburghii	Rroxscaffold_7G00194350
rosa_rugosa	Rorug06G0080900
rosa_samantha	Rh6AG196100 Rh6BG200300 Rh6CG201200
rosa_wichuraiana	Rw6G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	50, 187
AciI	CCGC	2 cut(s)	254, 272
AclWI	GGATC	1 cut(s)	514
AcuI	CTGAAG	2 cut(s)	174, 180
AfiI	CCNNNNNNNGG	4 cut(s)	144, 284, 407, 537
AgsI	TTSAA	1 cut(s)	367
AluBI	AGCT	2 cut(s)	150, 379
AluI	AGCT	2 cut(s)	150, 379
Alw21I	GWGCWC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	514
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	182
AspS9I	GGNCC	2 cut(s)	164, 398
AsuHPI	GGTGA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	152
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	64, 149, 438
BclI	TGATCA	1 cut(s)	508
BfaI	CTAG	1 cut(s)	84
BfuAI	ACCTGC	2 cut(s)	50, 187
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	3 cut(s)	183, 254, 273
BlsI	GCNGC	3 cut(s)	184, 255, 274
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	164, 398
BmiI	GGNNCC	3 cut(s)	276, 399, 400
BmsI	GCATC	3 cut(s)	20, 36, 462
BpiI	GAAGAC	1 cut(s)	181
Bpu10I	CCTNAGC	3 cut(s)	114, 264, 345
BpuEI	CTTGAG	3 cut(s)	203, 344, 401
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 284, 407, 537
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	2 cut(s)	442, 456
BseGI	GGATG	2 cut(s)	50, 477
BseLI	CCNNNNNNNGG	4 cut(s)	144, 284, 407, 537
BseMI	GCAATG	2 cut(s)	442, 456
BseMII	CTCAG	2 cut(s)	278, 510
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	269, 278
BslFI	GGGAC	2 cut(s)	229, 384
BslI	CCNNNNNNNGG	4 cut(s)	144, 284, 407, 537
BsmFI	GGGAC	2 cut(s)	229, 384
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	508, 519, 547
BspACI	CCGC	2 cut(s)	254, 272
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	277, 509
BspLI	GGNNCC	3 cut(s)	276, 399, 400
BspMI	ACCTGC	2 cut(s)	50, 187
BspPI	GGATC	1 cut(s)	514
BsrDI	GCAATG	2 cut(s)	442, 456
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	496
BssAI	RCCGGY	1 cut(s)	268
BssMI	GATC	3 cut(s)	508, 519, 547
Bst6I	CTCTTC	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	114, 264, 345, 496
BstF5I	GGATG	2 cut(s)	50, 477
BstKTI	GATC	3 cut(s)	511, 522, 550
BstMBI	GATC	3 cut(s)	508, 519, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	259, 376, 417
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	2 cut(s)	519, 547
BstYI	RGATCY	2 cut(s)	519, 547
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	50, 477
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	2 cut(s)	50, 187
Cac8I	GCNNGC	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	164, 398
DdeI	CTNAG	4 cut(s)	114, 264, 345, 496
DpnI	GATC	3 cut(s)	510, 521, 549
DpnII	GATC	3 cut(s)	508, 519, 547
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	150
Eco57I	CTGAAG	2 cut(s)	174, 180
EcoICRI	GAGCTC	1 cut(s)	150
EcoO109I	RGGNCCY	2 cut(s)	164, 398
EcoT38I	GRGCYC	1 cut(s)	152
FaiI	YATR	5 cut(s)	67, 98, 126, 170, 486
FaqI	GGGAC	2 cut(s)	229, 384
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	183, 254, 273
FokI	GGATG	2 cut(s)	37, 484
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	183, 254, 273
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	183, 254, 273
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	2 cut(s)	269, 278
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	2 cut(s)	352, 391
HpaII	CCGG	2 cut(s)	269, 278
HphI	GGTGA	1 cut(s)	102
Hpy188I	TCNGA	3 cut(s)	197, 333, 499
Hpy188III	TCNNGA	4 cut(s)	145, 323, 356, 551
HpyAV	CCTTC	6 cut(s)	155, 198, 258, 334, 412, 533
HpyCH4V	TGCA	2 cut(s)	27, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	259, 376, 417
HpyF3I	CTNAG	4 cut(s)	114, 264, 345, 496
KflI	GGGWCCC	1 cut(s)	398
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	508, 519, 547
LmnI	GCTCC	4 cut(s)	147, 155, 190, 280
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	3 cut(s)	20, 36, 462
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	289, 316
MalI	GATC	3 cut(s)	510, 521, 549
MboI	GATC	3 cut(s)	508, 519, 547
MboII	GAAGA	8 cut(s)	6, 63, 66, 96, 99, 186, 385, 453
MflI	RGATCY	2 cut(s)	519, 547
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	2 cut(s)	88, 532
MnlI	CCTC	9 cut(s)	88, 91, 214, 243, 247, 273, 295, 327, 376
MroNI	GCCGGC	1 cut(s)	268
MspI	CCGG	2 cut(s)	269, 278
MwoI	GCNNNNNNNGC	3 cut(s)	259, 376, 417
NaeI	GCCGGC	1 cut(s)	270
NdeII	GATC	3 cut(s)	508, 519, 547
NgoMIV	GCCGGC	1 cut(s)	268
NlaIV	GGNNCC	3 cut(s)	276, 399, 400
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	352, 391
PkrI	GCNGC	3 cut(s)	184, 255, 274
PpuMI	RGGWCCY	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	398
PspN4I	GGNNCC	3 cut(s)	276, 399, 400
PspPI	GGNCC	2 cut(s)	164, 398
PspPPI	RGGWCCY	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	519, 547
SacI	GAGCTC	1 cut(s)	152
SatI	GCNGC	3 cut(s)	183, 254, 273
Sau3AI	GATC	3 cut(s)	508, 519, 547
Sau96I	GGNCC	2 cut(s)	164, 398
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	7 cut(s)	44, 115, 152, 181, 214, 235, 381
SfaNI	GCATC	3 cut(s)	20, 36, 462
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	3 cut(s)	218, 323, 380
SmoI	CTYRAG	3 cut(s)	218, 323, 380
Sse9I	AATT	2 cut(s)	88, 532
SsiI	CCGC	2 cut(s)	254, 272
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	152
TasI	AATT	2 cut(s)	88, 532
TauI	GCSGC	2 cut(s)	256, 275
TfiI	GAWTC	2 cut(s)	352, 391
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	398
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.