Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015932

Physical Location & Seq

Genomic Coordinates Reverse (-)

5340483 .. 5343180

Gene Structure 2698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1032800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCAGTGGCATCTTCCTTCCCCTGCATCAAAACCCCACCTGCATCACCATCTTCCTGCTCACATTCTCCTTCTTGTTCCTCAAACCATTCTTTTATGCTCTCTTCTTCCTCTTCAACAAAGCCTTACTATGTCAAATTCAGCATAAGGAGCTCTCAAACCGAAGGCCCTATCAGAAGACCTGGTGCTCCTTCTCTCCGGGAACCCTCCCGGCCGTCTTCCCCTCTCACACCAACGCCTCCTTCTCCTCCGTCTCCTTCGCCGCCGCCTCAGCAGCCCTTGAAGCCGGAACAGGTTTCCGGGCAGACTATGGTGGAGGACAAGAATGTGGTGACCTTGGAGTTCCAGAGGCAAAAGGCTAAGGAGATTCAGGAGTACTTCAAGCAGAAGAAGCTTGAGGAAGCTAACCAGGGTCCTTTCTTTGGCTTTGTTGGCAAGAATGAGATCAGCAATGGCAGATGGGCAATGTTCGGTTTTGCCGTTGGAATGCTAACAGAGTATGCAACTGGCTCGGACTTTGTTGATCAAGTAAAGATACTTCTCTCCAATTTCGGAATTCTAGATCTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

191

Amino Acids

20.76

Weight (kDa)

8.77

Isoelectric Point (pI)

76.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34000
fragaria_vesca	FvH4_2g13070
malus_domestica	MD05G1032800.v1.1 MD10G1033800.v1.1
prunus_persica	Prupe.8G039900_v2.0.a1
pyrus_communis	pycom05g02380 pycom10g02230
rosa_chinensis	RchiOBHm_Chr6g0274331
rosa_laevigata	RLG00000013552
rosa_roxburghii	Rroxscaffold_7G00194350
rosa_rugosa	Rorug06G0080900
rosa_samantha	Rh6AG196100 Rh6BG200300 Rh6CG201200
rosa_wichuraiana	Rw6G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	1 cut(s)	49
AciI	CCGC	2 cut(s)	263, 266
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	137, 555
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	117, 283, 382
AjnI	CCWGG	2 cut(s)	181, 408
AjuI	GAANNNNNNNTTGG	2 cut(s)	226, 258
AluBI	AGCT	3 cut(s)	153, 394, 404
AluI	AGCT	3 cut(s)	153, 394, 404
Alw21I	GWGCWC	2 cut(s)	155, 190
Alw26I	GTCTC	1 cut(s)	258
AoxI	GGCC	2 cut(s)	166, 212
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	2 cut(s)	137, 555
AspS9I	GGNCC	2 cut(s)	167, 413
AsuC2I	CCSGG	3 cut(s)	200, 211, 301
AsuHPI	GGTGA	2 cut(s)	39, 343
AvaII	GGWCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbsI	GAAGAC	2 cut(s)	184, 210
Bbv12I	GWGCWC	2 cut(s)	155, 190
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	58, 453
BceAI	ACGGC	2 cut(s)	199, 464
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BciT130I	CCWGG	2 cut(s)	183, 410
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	3 cut(s)	200, 211, 301
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	49
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	3 cut(s)	263, 266, 275
BlsI	GCNGC	3 cut(s)	264, 267, 276
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	5 cut(s)	183, 200, 211, 301, 410
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	167, 413
BmiI	GGNNCC	2 cut(s)	204, 414
BmrFI	CCNGG	5 cut(s)	183, 200, 211, 301, 410
BmsI	GCATC	3 cut(s)	20, 36, 53
BpiI	GAAGAC	2 cut(s)	184, 210
Bpu10I	CCTNAGC	2 cut(s)	270, 360
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	3 cut(s)	200, 211, 301
BsaJI	CCNNGG	2 cut(s)	336, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	511
Bse3DI	GCAATG	2 cut(s)	457, 471
BseBI	CCWGG	2 cut(s)	183, 410
BseDI	CCNNGG	2 cut(s)	336, 409
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	2 cut(s)	457, 471
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	237
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	168, 214
BsiEI	CGRYCG	1 cut(s)	215
BsiHKAI	GWGCWC	2 cut(s)	155, 190
BsiSI	CCGG	4 cut(s)	199, 211, 287, 300
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	168, 214
Bsp1286I	GDGCHC	2 cut(s)	155, 190
Bsp143I	GATC	3 cut(s)	444, 523, 562
BspACI	CCGC	2 cut(s)	263, 266
BspANI	GGCC	2 cut(s)	168, 214
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	204, 414
BspMI	ACCTGC	1 cut(s)	49
BsrDI	GCAATG	2 cut(s)	457, 471
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	2 cut(s)	336, 409
BssMI	GATC	3 cut(s)	444, 523, 562
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	183, 410
Bst6I	CTCTTC	2 cut(s)	109, 118
BstDEI	CTNAG	2 cut(s)	270, 360
BstEII	GGTNACC	1 cut(s)	331
BstKTI	GATC	3 cut(s)	447, 526, 565
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	3 cut(s)	444, 523, 562
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	6 cut(s)	150, 271, 274, 283, 391, 432
BstNI	CCWGG	2 cut(s)	183, 410
BstPI	GGTNACC	1 cut(s)	331
BstSCI	CCNGG	5 cut(s)	181, 198, 209, 299, 408
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	2 cut(s)	184, 210
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BstZI	CGGCCG	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	168, 214
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	167, 413
CsiI	ACCWGGT	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	376
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	270, 360
DpnI	GATC	3 cut(s)	446, 525, 564
DpnII	GATC	3 cut(s)	444, 523, 562
EaeI	YGGCCR	1 cut(s)	212
EagI	CGGCCG	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	109, 118
EarI	CTCTTC	2 cut(s)	109, 118
Ecl136II	GAGCTC	1 cut(s)	153
EclXI	CGGCCG	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	413
Eco52I	CGGCCG	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	153
EcoO109I	RGGNCCY	2 cut(s)	167, 413
EcoO65I	GGTNACC	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	181, 408
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	336
Esp3I	CGTCTC	1 cut(s)	258
FaiI	YATR	5 cut(s)	98, 132, 146, 311, 501
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	263, 266, 275
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	263, 266, 275
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	3 cut(s)	263, 266, 275
HaeIII	GGCC	2 cut(s)	168, 214
HapII	CCGG	4 cut(s)	199, 211, 287, 300
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	4 cut(s)	199, 211, 287, 300
HphI	GGTGA	2 cut(s)	39, 343
Hpy188I	TCNGA	3 cut(s)	176, 514, 554
Hpy188III	TCNNGA	4 cut(s)	346, 371, 560, 566
HpyAV	CCTTC	6 cut(s)	28, 81, 158, 201, 252, 267
HpyCH4V	TGCA	3 cut(s)	27, 44, 503
HpyF10VI	GCNNNNNNNGC	6 cut(s)	150, 271, 274, 283, 391, 432
HpyF3I	CTNAG	2 cut(s)	270, 360
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	444, 523, 562
LmnI	GCTCC	2 cut(s)	150, 193
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	3 cut(s)	20, 36, 53
MabI	ACCWGGT	1 cut(s)	181
MaeI	CTAG	1 cut(s)	560
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	3 cut(s)	446, 525, 564
MboI	GATC	3 cut(s)	444, 523, 562
MboII	GAAGA	8 cut(s)	6, 45, 96, 99, 105, 189, 210, 400
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	2 cut(s)	155, 190
MluCI	AATT	3 cut(s)	137, 547, 555
MmeI	TCCRAC	1 cut(s)	463
MspI	CCGG	4 cut(s)	199, 211, 287, 300
MspR9I	CCNGG	5 cut(s)	183, 200, 211, 301, 410
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	183, 410
MwoI	GCNNNNNNNGC	6 cut(s)	150, 271, 274, 283, 391, 432
NciI	CCSGG	3 cut(s)	200, 211, 301
NdeII	GATC	3 cut(s)	444, 523, 562
NlaIV	GGNNCC	2 cut(s)	204, 414
NmuCI	GTSAC	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	477
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	367
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	264, 267, 276
PpuMI	RGGWCCY	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	181, 408
PspEI	GGTNACC	1 cut(s)	331
PspGI	CCWGG	2 cut(s)	181, 408
PspN4I	GGNNCC	2 cut(s)	204, 414
PspPI	GGNCC	2 cut(s)	167, 413
PspPPI	RGGWCCY	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	155
SatI	GCNGC	3 cut(s)	263, 266, 275
Sau3AI	GATC	3 cut(s)	444, 523, 562
Sau96I	GGNCC	2 cut(s)	167, 413
ScaI	AGTACT	1 cut(s)	377
ScrFI	CCNGG	5 cut(s)	183, 200, 211, 301, 410
SduI	GDGCHC	2 cut(s)	155, 190
SetI	ASST	7 cut(s)	43, 155, 184, 297, 338, 396, 406
SexAI	ACCWGGT	1 cut(s)	181
SfaNI	GCATC	3 cut(s)	20, 36, 53
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	3 cut(s)	137, 547, 555
SsiI	CCGC	2 cut(s)	263, 266
SspMI	CTAG	1 cut(s)	560
SstI	GAGCTC	1 cut(s)	155
StyD4I	CCNGG	5 cut(s)	181, 198, 209, 299, 408
StyI	CCWWGG	1 cut(s)	336
TasI	AATT	3 cut(s)	137, 547, 555
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	2 cut(s)	265, 268
TfiI	GAWTC	1 cut(s)	367
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	331
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	137, 555
XbaI	TCTAGA	1 cut(s)	559
XspI	CTAG	1 cut(s)	560
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.