Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010350

Physical Location & Seq

Genomic Coordinates Forward (+)

10798140 .. 10801621

Gene Structure 3482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGAGTCTCTGTGTTCAGTTCTCTTACCAACGACGGTGAAATTCTCTTACCCAAACCTTACTTCAACGGCTACTGTTGCTTCTTTCTCAATCAAGAACGTGGCCTCCGGCCAGCGAAGAGCAGCAGCTACTGTAAAACCCTCTGAAAACCCAGCTAAAACCATCTCTCCAGCTCAACCAGCAAACCCAGTTTCTAGTTCAAAGAGTACAAGCAATGCTGCTTCTTTGCCTCCCAAGAAGGTTCTGGTTCCGATTGGGTTTGGGACTGAAGAAATGGAGGCTGTGATTATGGTGGATGTTCTGCGCCGAGCTGGTGCTGATGTCATTGTGGCCTCGGTGGAGCCGCAGCTCCAAATTGAAGCTTCTTGTGGGACTAAGTTGGTTGCTGATACCTCCATTTCCTCCTGTTCTGATCAAATTTTTGATCTTGTGGCTTTACCGGGAGGAATGCCTGGCTCGGTGAGGTTAAGAGACTGCGAAGTTCTTCAGAAAATTACAAGGCAACAGGCTGAGGAAAGGAGGTTATATGGAGCTATATGTGCTGCTCCAGCAGTAACACTTCTACCATGGGGTCTTCTAAGGAGAAAGCAGACAACTTGCCACCCTGCATTCTTTGACAAGCTACCAACCTTCTGGGCAGTCAAATCAAACATTCAAGTTTCTGGAGTACTCACAACAAGCCGTGGCCCTGGAACTTGTTTTGTTTTTGCCCTGTGCCTAGTGGAACAGCTATTTGGGGAATCTGTCGCCAAGGAAATTGGAGAGTTGCTGTTGGTGGGTCCTGCTGATGATGAATCTAGAAAGGAGGAGTTCAACAAAGTTGAATGGTCTTTTGATCACATCCCTCGAGTTCTCATTCCAGTTGCAAATGGTTCTGAAGAGATTGAAGTAGTGACTATTGTAGATATTCTGCGGAGAGCAAAGGTGGACATAACTGTTGCTTCAGTTGAAAAATCTGAGCAGATTTTGGCATCTCAAGGCACCAAAATCATAGCTGACAAGTTAATTGGTGTTGCTGCCAAGTCAACATATGATTTAATCATTCTTCCGGGAGGAAATGCTGGGGCTGAGCGGCTGAGCAAATCTAGAATTCTAAAGAGTCTCCTCAAAGAACAAGAACTAGCCAGAAGAATATATGGAGCAGTCTGTTCCTCATCAGCAATTCTACTTGAGCAGGGCTTACTGAAGGGTAAGAAAGCCACTGCCCATCCTTCCATTGCGAGCAAACCTACAGATGAGTTGGTGAACAACACCAAAGTAGTAATTGATGGTAACCTGATCACAAGCAGGGGACTTGCTACTGTTGCAGAATTTGCATTGGCTATTGTGAGCAAACTATATGGTCATGCAAGGGCAAGAAGTGTTGCAGAAGGCCTTGTTTATGAGTACCCGAAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

466

Amino Acids

49.79

Weight (kDa)

8.73

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DJ-1_PfpI	PF01965	79 - 243	1.1e-38	DJ-1/PfpI family
DJ-1_PfpI	PF01965	283 - 444	1.2e-38	DJ-1/PfpI family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22790 AT1G22790
fragaria_vesca	FvH4_2g13060 FvH4_2g13060
malus_domestica	MD05G1032900.v1.1 MD10G1033900.v1.1
prunus_persica	Prupe.8G040000_v2.0.a1
pyrus_communis	pycom05g02390 pycom10g02240
rosa_chinensis	RchiOBHm_Chr6g0274321
rosa_laevigata	RLG00000013554
rosa_multiflora	Rmu_sc0006675.1_g000004 Rmu_sc0007877.1_g000024
rosa_roxburghii	Rroxscaffold_7G00194370
rosa_rugosa	Rorug06G0080800 Rorug06G0080900
rosa_samantha	Rh6AG196000 Rh6BG200200 Rh6CG201100 Rh6DG191900
rosa_wichuraiana	Rw6G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	980
AccBSI	CCGCTC	1 cut(s)	1072
AciI	CCGC	3 cut(s)	344, 913, 1072
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	4 cut(s)	41, 417, 1089, 1310
AcuI	CTGAAG	5 cut(s)	288, 470, 897, 927, 1205
AfaI	GTAC	3 cut(s)	208, 669, 1388
AgsI	TTSAA	8 cut(s)	66, 201, 359, 656, 814, 824, 887, 950
AjnI	CCWGG	2 cut(s)	451, 688
AjuI	GAANNNNNNNTTGG	4 cut(s)	46, 78, 717, 749
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
Alw26I	GTCTC	3 cut(s)	12, 465, 1106
AlwNI	CAGNNNCTG	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	846
AoxI	GGCC	5 cut(s)	102, 109, 330, 685, 1372
ApeKI	GCWGC	6 cut(s)	122, 125, 218, 346, 542, 1016
ApoI	RAATTY	4 cut(s)	41, 417, 1089, 1310
Asp700I	GAANNNNTTC	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	686, 779
AsuC2I	CCSGG	2 cut(s)	441, 1050
AsuHPI	GGTGA	3 cut(s)	49, 472, 1255
AvaI	CYCGRG	1 cut(s)	846
AvaII	GGWCC	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	980
BbsI	GAAGAC	1 cut(s)	566
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	6 cut(s)	134, 137, 205, 358, 529, 1003
BccI	CCATC	3 cut(s)	170, 1215, 1262
BceAI	ACGGC	2 cut(s)	84, 666
BciT130I	CCWGG	2 cut(s)	453, 690
BclI	TGATCA	3 cut(s)	412, 835, 1278
BcnI	CCSGG	2 cut(s)	441, 1050
BcoDI	GTCTC	3 cut(s)	12, 465, 1106
BfaI	CTAG	5 cut(s)	195, 719, 798, 1086, 1121
BfmI	CTRYAG	1 cut(s)	1230
BisI	GCNGC	8 cut(s)	123, 126, 219, 344, 347, 543, 1017, 1073
BlpI	GCTNAGC	2 cut(s)	1068, 1076
BlsI	GCNGC	8 cut(s)	124, 127, 220, 345, 348, 544, 1018, 1074
BmcAI	AGTACT	1 cut(s)	669
Bme1390I	CCNGG	4 cut(s)	441, 453, 690, 1050
Bme18I	GGWCC	1 cut(s)	779
BmeT110I	CYCGRG	1 cut(s)	846
BmgT120I	GGNCC	2 cut(s)	686, 779
BmiI	GGNNCC	4 cut(s)	249, 342, 780, 982
BmrFI	CCNGG	4 cut(s)	441, 453, 690, 1050
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	980
BmuI	ACTGGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	3 cut(s)	153, 531, 684
Bpu10I	CCTNAGC	1 cut(s)	510
Bpu1102I	GCTNAGC	2 cut(s)	1068, 1076
BpuEI	CTTGAG	2 cut(s)	960, 1190
BpuMI	CCSGG	2 cut(s)	441, 1050
BsaJI	CCNNGG	5 cut(s)	333, 566, 682, 688, 750
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 89, 119, 151, 181
Bse1I	ACTGG	2 cut(s)	188, 860
Bse3DI	GCAATG	2 cut(s)	220, 1215
BseBI	CCWGG	2 cut(s)	453, 690
BseDI	CCNNGG	5 cut(s)	333, 566, 682, 688, 750
BseGI	GGATG	3 cut(s)	301, 840, 1207
BseMI	GCAATG	2 cut(s)	220, 1215
BseMII	CTCAG	4 cut(s)	501, 948, 1059, 1067
BseNI	ACTGG	2 cut(s)	188, 860
BseRI	GAGGAG	2 cut(s)	821, 1094
BseXI	GCAGC	6 cut(s)	134, 137, 205, 358, 529, 1003
BseYI	CCCAGC	2 cut(s)	151, 1061
BshFI	GGCC	5 cut(s)	104, 111, 332, 687, 1374
BshNI	GGYRCC	1 cut(s)	980
BsiHKCI	CYCGRG	1 cut(s)	846
BsiSI	CCGG	3 cut(s)	108, 440, 1049
BslFI	GGGAC	3 cut(s)	277, 385, 1305
BsmAI	GTCTC	3 cut(s)	12, 465, 1106
BsmFI	GGGAC	3 cut(s)	277, 385, 1305
BsmI	GAATGC	2 cut(s)	453, 608
BsnI	GGCC	5 cut(s)	104, 111, 332, 687, 1374
BsoBI	CYCGRG	1 cut(s)	846
Bsp143I	GATC	4 cut(s)	412, 424, 835, 1278
Bsp1720I	GCTNAGC	2 cut(s)	1068, 1076
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	3 cut(s)	344, 913, 1072
BspANI	GGCC	5 cut(s)	104, 111, 332, 687, 1374
BspCNI	CTCAG	4 cut(s)	502, 949, 1060, 1068
BspLI	GGNNCC	4 cut(s)	249, 342, 780, 982
BspQI	GCTCTTC	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	980
BsrBI	CCGCTC	1 cut(s)	1072
BsrDI	GCAATG	2 cut(s)	220, 1215
BsrI	ACTGG	2 cut(s)	188, 860
BssECI	CCNNGG	5 cut(s)	333, 566, 682, 688, 750
BssMI	GATC	4 cut(s)	412, 424, 835, 1278
BssT1I	CCWWGG	2 cut(s)	566, 750
Bst2UI	CCWGG	2 cut(s)	453, 690
Bst4CI	ACNGT	5 cut(s)	37, 76, 133, 937, 1303
Bst6I	CTCTTC	2 cut(s)	112, 873
BstAPI	GCANNNNNTGC	1 cut(s)	1313
BstC8I	GCNNGC	2 cut(s)	113, 1222
BstDEI	CTNAG	7 cut(s)	375, 510, 578, 957, 1068, 1076, 1398
BstDSI	CCRYGG	2 cut(s)	566, 682
BstEII	GGTNACC	1 cut(s)	1271
BstF5I	GGATG	3 cut(s)	301, 840, 1207
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	4 cut(s)	415, 427, 838, 1281
BstMAI	GTCTC	3 cut(s)	12, 465, 1106
BstMBI	GATC	4 cut(s)	412, 424, 835, 1278
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 179, 539, 548, 1304, 1313
BstNI	CCWGG	2 cut(s)	453, 690
BstPI	GGTNACC	1 cut(s)	1271
BstSCI	CCNGG	4 cut(s)	439, 451, 688, 1048
BstSFI	CTRYAG	1 cut(s)	1230
BstV1I	GCAGC	6 cut(s)	134, 137, 205, 358, 529, 1003
BstV2I	GAAGAC	1 cut(s)	566
BstXI	CCANNNNNNTGG	1 cut(s)	633
BsuRI	GGCC	5 cut(s)	104, 111, 332, 687, 1374
BtgI	CCRYGG	2 cut(s)	566, 682
BtsCI	GGATG	3 cut(s)	301, 840, 1207
BtsI	GCAGTG	1 cut(s)	1200
BtsIMutI	CAGTG	1 cut(s)	1200
Cac8I	GCNNGC	2 cut(s)	113, 1222
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	686, 779
Csp6I	GTAC	3 cut(s)	207, 668, 1387
CviAII	CATG	2 cut(s)	567, 1346
CviQI	GTAC	3 cut(s)	207, 668, 1387
DdeI	CTNAG	7 cut(s)	375, 510, 578, 957, 1068, 1076, 1398
DpnI	GATC	4 cut(s)	414, 426, 837, 1280
DpnII	GATC	4 cut(s)	412, 424, 835, 1278
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	112, 873
EarI	CTCTTC	2 cut(s)	112, 873
Eco130I	CCWWGG	2 cut(s)	566, 750
Eco147I	AGGCCT	1 cut(s)	1374
Eco47I	GGWCC	1 cut(s)	779
Eco57I	CTGAAG	5 cut(s)	288, 470, 897, 927, 1205
Eco88I	CYCGRG	1 cut(s)	846
Eco91I	GGTNACC	1 cut(s)	1271
EcoO109I	RGGNCCY	1 cut(s)	779
EcoO65I	GGTNACC	1 cut(s)	1271
EcoRI	GAATTC	1 cut(s)	1089
EcoRII	CCWGG	2 cut(s)	451, 688
EcoT14I	CCWWGG	2 cut(s)	566, 750
ErhI	CCWWGG	2 cut(s)	566, 750
FaeI	CATG	2 cut(s)	570, 1349
FaqI	GGGAC	3 cut(s)	277, 385, 1305
FatI	CATG	2 cut(s)	566, 1345
FauNDI	CATATG	1 cut(s)	1030
FbaI	TGATCA	3 cut(s)	412, 835, 1278
Fnu4HI	GCNGC	8 cut(s)	123, 126, 219, 344, 347, 543, 1017, 1073
FokI	GGATG	3 cut(s)	308, 827, 1194
Fsp4HI	GCNGC	8 cut(s)	123, 126, 219, 344, 347, 543, 1017, 1073
FspBI	CTAG	5 cut(s)	195, 719, 798, 1086, 1121
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	8 cut(s)	123, 126, 219, 344, 347, 543, 1017, 1073
GsaI	CCCAGC	2 cut(s)	155, 1065
GsuI	CTGGAG	3 cut(s)	153, 531, 684
HaeIII	GGCC	5 cut(s)	104, 111, 332, 687, 1374
HapII	CCGG	3 cut(s)	108, 440, 1049
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	570, 1349
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	1026
HindII	GTYRAC	1 cut(s)	1026
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	4 cut(s)	5, 740, 794, 1099
HpaII	CCGG	3 cut(s)	108, 440, 1049
HphI	GGTGA	3 cut(s)	49, 472, 1255
Hpy166II	GTNNAC	3 cut(s)	928, 1026, 1246
Hpy188I	TCNGA	6 cut(s)	145, 252, 412, 489, 877, 958
Hpy188III	TCNNGA	4 cut(s)	94, 663, 798, 1086
Hpy8I	GTNNAC	3 cut(s)	928, 1026, 1246
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	5 cut(s)	232, 640, 1180, 1221, 1364
HpyCH4III	ACNGT	5 cut(s)	37, 76, 133, 937, 1303
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	6 cut(s)	608, 866, 1307, 1316, 1349, 1367
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 179, 539, 548, 1304, 1313
HpyF3I	CTNAG	7 cut(s)	375, 510, 578, 957, 1068, 1076, 1398
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	570, 1349
HspAI	GCGC	1 cut(s)	304
Ksp22I	TGATCA	3 cut(s)	412, 835, 1278
Kzo9I	GATC	4 cut(s)	412, 424, 835, 1278
LguI	GCTCTTC	1 cut(s)	112
LmnI	GCTCC	5 cut(s)	340, 354, 530, 550, 1139
Lsp1109I	GCAGC	6 cut(s)	134, 137, 205, 358, 529, 1003
LweI	GCATC	1 cut(s)	980
MaeI	CTAG	5 cut(s)	195, 719, 798, 1086, 1121
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	3 cut(s)	553, 892, 1271
MalI	GATC	4 cut(s)	414, 426, 837, 1280
MbiI	CCGCTC	1 cut(s)	1072
MboI	GATC	4 cut(s)	412, 424, 835, 1278
MboII	GAAGA	7 cut(s)	129, 281, 476, 566, 890, 1037, 1140
MlyI	GAGTC	2 cut(s)	14, 1108
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	3 cut(s)	467, 1004, 1037
MspI	CCGG	3 cut(s)	108, 440, 1049
MspR9I	CCNGG	4 cut(s)	441, 453, 690, 1050
Mva1269I	GAATGC	2 cut(s)	453, 608
MvaI	CCWGG	2 cut(s)	453, 690
MwoI	GCNNNNNNNGC	6 cut(s)	77, 179, 539, 548, 1304, 1313
NciI	CCSGG	2 cut(s)	441, 1050
NcoI	CCATGG	1 cut(s)	566
NdeI	CATATG	1 cut(s)	1030
NdeII	GATC	4 cut(s)	412, 424, 835, 1278
NlaIII	CATG	2 cut(s)	570, 1349
NlaIV	GGNNCC	4 cut(s)	249, 342, 780, 982
NmeAIII	GCCGAG	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	892
PaeR7I	CTCGAG	1 cut(s)	846
PceI	AGGCCT	1 cut(s)	1374
PciSI	GCTCTTC	1 cut(s)	112
PctI	GAATGC	2 cut(s)	453, 608
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	740, 794
PfoI	TCCNGGA	1 cut(s)	1048
PkrI	GCNGC	8 cut(s)	124, 127, 220, 345, 348, 544, 1018, 1074
PleI	GAGTC	2 cut(s)	13, 1107
PpsI	GAGTC	2 cut(s)	13, 1107
PpuMI	RGGWCCY	1 cut(s)	779
Psp5II	RGGWCCY	1 cut(s)	779
Psp6I	CCWGG	2 cut(s)	451, 688
PspEI	GGTNACC	1 cut(s)	1271
PspFI	CCCAGC	2 cut(s)	151, 1061
PspGI	CCWGG	2 cut(s)	451, 688
PspN4I	GGNNCC	4 cut(s)	249, 342, 780, 982
PspPI	GGNCC	2 cut(s)	686, 779
PspPPI	RGGWCCY	1 cut(s)	779
PspXI	VCTCGAGB	1 cut(s)	846
PstNI	CAGNNNCTG	1 cut(s)	131
RsaI	GTAC	3 cut(s)	208, 669, 1388
RsaNI	GTAC	3 cut(s)	207, 668, 1387
SapI	GCTCTTC	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	467, 1004, 1037
SatI	GCNGC	8 cut(s)	123, 126, 219, 344, 347, 543, 1017, 1073
Sau3AI	GATC	4 cut(s)	412, 424, 835, 1278
Sau96I	GGNCC	2 cut(s)	686, 779
ScaI	AGTACT	1 cut(s)	669
SchI	GAGTC	2 cut(s)	14, 1108
ScrFI	CCNGG	4 cut(s)	441, 453, 690, 1050
SfaNI	GCATC	1 cut(s)	980
SfcI	CTRYAG	1 cut(s)	1230
Sfr274I	CTCGAG	1 cut(s)	846
SinI	GGWCC	1 cut(s)	779
SlaI	CTCGAG	1 cut(s)	846
SmlI	CTYRAG	3 cut(s)	846, 975, 1169
SmoI	CTYRAG	3 cut(s)	846, 975, 1169
SseBI	AGGCCT	1 cut(s)	1374
SsiI	CCGC	3 cut(s)	344, 913, 1072
SspMI	CTAG	5 cut(s)	195, 719, 798, 1086, 1121
StuI	AGGCCT	1 cut(s)	1374
StyD4I	CCNGG	4 cut(s)	439, 451, 688, 1048
StyI	CCWWGG	2 cut(s)	566, 750
TaaI	ACNGT	5 cut(s)	37, 76, 133, 937, 1303
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	847
TatI	WGTACW	2 cut(s)	206, 667
TauI	GCSGC	2 cut(s)	346, 1075
TfiI	GAWTC	2 cut(s)	740, 794
Tru1I	TTAA	3 cut(s)	467, 1004, 1037
Tru9I	TTAA	3 cut(s)	467, 1004, 1037
TscAI	CASTG	1 cut(s)	1207
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	6 cut(s)	122, 125, 218, 346, 542, 1016
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	1 cut(s)	807
TspRI	CASTG	1 cut(s)	1207
VpaK11BI	GGWCC	1 cut(s)	779
XapI	RAATTY	4 cut(s)	41, 417, 1089, 1310
XbaI	TCTAGA	2 cut(s)	797, 1085
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XhoI	CTCGAG	1 cut(s)	846
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	5 cut(s)	195, 719, 798, 1086, 1121
ZrmI	AGTACT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.