Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010350

Physical Location & Seq

Genomic Coordinates Reverse (-)

3989571 .. 3995278

Gene Structure 5708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G040000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTATTGGCAGTAGAAGGAGGAGGGTTCTTCTCATCTTCAGCTTCTGGGTATAGCAAAGGCCTGGCCCTTCTTCTCTTGGGTCAGAAGAACGAAGATAAACCCATGAGAGTTTCGCCGTGGAATCAGTACCAGTTGGTGGACCAAGAATCTGACACTGACCTCCAGCTGGCTTCCACAAAGGACCGACTTTCCCGCGGGTGCGCCTCCTTTGTCTGCTTTGGTCGCGCTTCCGCCGGGCTTGACACTCCATCTCCTCTTAAAGTGGGCCCTGCCCAACAGCAGGATAACTTGCCTGGGTCTCTAGTTTCTGATAAAGGCAAGGATCACACTGCTGACACTGACGATGATCATAATTCAATAAAAGTTGTTCTTAAAAGTAGCCTGAAGAAGCCATCAAAAAGAACTCCAGTTTCTGTTGAGAGTGCTAATGAACGTGAAGCATTGAGTGAAACATGTAGCGACACTCCTGATAATGCAGAAAGGAGGAAAGTGCAGTGGACAGATACTTGTGGGAGTGAGCTTGTTGAGATCAGGGAATTTGAGCCCAGTGAATTGGATGGATCAGATGATGAATTCGACAATGGGAATGAAAGAAGTTGTTCATGTGTGATTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.35

Weight (kDa)

4.64

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22790 AT1G22790
fragaria_vesca	FvH4_2g13060 FvH4_2g13060
malus_domestica	MD05G1032900.v1.1 MD10G1033900.v1.1
prunus_persica	Prupe.8G040000_v2.0.a1
pyrus_communis	pycom05g02390 pycom10g02240
rosa_chinensis	RchiOBHm_Chr6g0274321
rosa_laevigata	RLG00000013554
rosa_multiflora	Rmu_sc0006675.1_g000004 Rmu_sc0007877.1_g000024
rosa_roxburghii	Rroxscaffold_7G00194370
rosa_rugosa	Rorug06G0080800 Rorug06G0080900
rosa_samantha	Rh6AG196000 Rh6BG200200 Rh6CG201100 Rh6DG191900
rosa_wichuraiana	Rw6G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccII	CGCG	2 cut(s)	198, 228
AciI	CCGC	3 cut(s)	196, 198, 234
AclWI	GGATC	2 cut(s)	333, 571
AcsI	RAATTY	2 cut(s)	539, 575
AcuI	CTGAAG	2 cut(s)	24, 407
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
AflIII	ACRYGT	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	360
AjnI	CCWGG	2 cut(s)	63, 295
AluBI	AGCT	3 cut(s)	44, 169, 523
AluI	AGCT	3 cut(s)	44, 169, 523
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	2 cut(s)	333, 571
AlwNI	CAGNNNCTG	2 cut(s)	47, 416
AoxI	GGCC	3 cut(s)	61, 66, 268
ApaI	GGGCCC	1 cut(s)	272
ApoI	RAATTY	2 cut(s)	539, 575
Asp700I	GAANNNNTTC	1 cut(s)	601
AspLEI	GCGC	2 cut(s)	206, 230
AspS9I	GGNCC	5 cut(s)	67, 142, 184, 268, 269
AsuC2I	CCSGG	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	142, 184
BaeGI	GKGCMC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	272, 549
BccI	CCATC	3 cut(s)	259, 403, 554
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	65, 297
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	1 cut(s)	305
Bme1390I	CCNGG	3 cut(s)	65, 238, 297
Bme18I	GGWCC	2 cut(s)	142, 184
BmgT120I	GGNCC	5 cut(s)	67, 142, 184, 268, 269
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	3 cut(s)	65, 238, 297
BmrI	ACTGGG	1 cut(s)	543
BmuI	ACTGGG	1 cut(s)	543
BpmI	CTGGAG	2 cut(s)	149, 393
BpuMI	CCSGG	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	119, 196, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 169, 283
Bse1I	ACTGG	3 cut(s)	133, 410, 549
BseBI	CCWGG	2 cut(s)	65, 297
BseDI	CCNNGG	3 cut(s)	119, 196, 296
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
BseNI	ACTGG	3 cut(s)	133, 410, 549
BseRI	GAGGAG	2 cut(s)	36, 246
BseSI	GKGCMC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	2 cut(s)	198, 228
BshFI	GGCC	3 cut(s)	63, 68, 270
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
BsmAI	GTCTC	1 cut(s)	306
BsnI	GGCC	3 cut(s)	63, 68, 270
Bso31I	GGTCTC	1 cut(s)	306
Bsp120I	GGGCCC	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	272, 549
Bsp143I	GATC	4 cut(s)	325, 349, 531, 563
BspACI	CCGC	3 cut(s)	196, 198, 234
BspANI	GGCC	3 cut(s)	63, 68, 270
BspFNI	CGCG	2 cut(s)	198, 228
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	2 cut(s)	333, 571
BspTNI	GGTCTC	1 cut(s)	306
BsrI	ACTGG	3 cut(s)	133, 410, 549
BssECI	CCNNGG	3 cut(s)	119, 196, 296
BssMI	GATC	4 cut(s)	325, 349, 531, 563
Bst2UI	CCWGG	2 cut(s)	65, 297
BstC8I	GCNNGC	1 cut(s)	171
BstDSI	CCRYGG	2 cut(s)	119, 196
BstF5I	GGATG	1 cut(s)	565
BstFNI	CGCG	2 cut(s)	198, 228
BstHHI	GCGC	2 cut(s)	206, 230
BstKTI	GATC	4 cut(s)	328, 352, 534, 566
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	4 cut(s)	325, 349, 531, 563
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	2 cut(s)	65, 297
BstNSI	RCATGY	1 cut(s)	459
BstSCI	CCNGG	3 cut(s)	63, 236, 295
BstSLI	GKGCMC	1 cut(s)	272
BstUI	CGCG	2 cut(s)	198, 228
BstXI	CCANNNNNNTGG	1 cut(s)	556
BsuRI	GGCC	3 cut(s)	63, 68, 270
BtgI	CCRYGG	2 cut(s)	119, 196
BtsCI	GGATG	1 cut(s)	565
BtsI	GCAGTG	2 cut(s)	330, 503
BtsIMutI	CAGTG	5 cut(s)	156, 330, 339, 503, 556
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	2 cut(s)	47, 416
CfoI	GCGC	2 cut(s)	206, 230
Cfr13I	GGNCC	5 cut(s)	67, 142, 184, 268, 269
Cfr42I	CCGCGG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	3 cut(s)	106, 456, 606
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	4 cut(s)	327, 351, 533, 565
DpnII	GATC	4 cut(s)	325, 349, 531, 563
EciI	GGCGGA	1 cut(s)	223
Eco147I	AGGCCT	1 cut(s)	63
Eco24I	GRGCYC	2 cut(s)	272, 549
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	142, 184
Eco57I	CTGAAG	2 cut(s)	24, 407
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	63, 295
EcoT38I	GRGCYC	2 cut(s)	272, 549
FaeI	CATG	3 cut(s)	109, 459, 609
FaiI	YATR	6 cut(s)	54, 107, 354, 457, 607, 617
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	3 cut(s)	105, 455, 605
FauI	CCCGC	2 cut(s)	191, 203
FbaI	TGATCA	1 cut(s)	349
FokI	GGATG	1 cut(s)	572
FriOI	GRGCYC	2 cut(s)	272, 549
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	2 cut(s)	205, 229
GsuI	CTGGAG	2 cut(s)	149, 393
HaeIII	GGCC	3 cut(s)	63, 68, 270
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	2 cut(s)	206, 230
Hin1II	CATG	3 cut(s)	109, 459, 609
Hin6I	GCGC	2 cut(s)	204, 228
HinP1I	GCGC	2 cut(s)	204, 228
HinfI	GANTC	2 cut(s)	124, 149
HpaII	CCGG	1 cut(s)	237
Hpy166II	GTNNAC	2 cut(s)	142, 501
Hpy188I	TCNGA	4 cut(s)	87, 154, 313, 568
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	2 cut(s)	142, 501
HpyAV	CCTTC	2 cut(s)	11, 80
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	2 cut(s)	479, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	3 cut(s)	109, 459, 609
HspAI	GCGC	2 cut(s)	204, 228
Ksp22I	TGATCA	1 cut(s)	349
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	325, 349, 531, 563
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	436
MalI	GATC	4 cut(s)	327, 351, 533, 565
MboI	GATC	4 cut(s)	325, 349, 531, 563
MboII	GAAGA	6 cut(s)	22, 30, 65, 100, 107, 400
MhlI	GDGCHC	2 cut(s)	272, 549
MluCI	AATT	4 cut(s)	355, 539, 554, 575
MnlI	CCTC	6 cut(s)	14, 17, 173, 217, 267, 480
MroXI	GAANNNNTTC	1 cut(s)	601
MseI	TTAA	2 cut(s)	261, 375
MspA1I	CMGCKG	2 cut(s)	169, 198
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	3 cut(s)	65, 238, 297
MvaI	CCWGG	2 cut(s)	65, 297
MvnI	CGCG	2 cut(s)	198, 228
MwoI	GCNNNNNNNGC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	4 cut(s)	325, 349, 531, 563
NlaIII	CATG	3 cut(s)	109, 459, 609
NlaIV	GGNNCC	1 cut(s)	270
NspI	RCATGY	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	63
PciI	ACATGT	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	124, 149
PflMI	CCANNNNNTGG	1 cut(s)	139
PscI	ACATGT	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	63, 295
PspGI	CCWGG	2 cut(s)	63, 295
PspN4I	GGNNCC	1 cut(s)	270
PspOMI	GGGCCC	1 cut(s)	268
PspPI	GGNCC	5 cut(s)	67, 142, 184, 268, 269
PstNI	CAGNNNCTG	2 cut(s)	47, 416
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacII	CCGCGG	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	261, 375
Sau3AI	GATC	4 cut(s)	325, 349, 531, 563
Sau96I	GGNCC	5 cut(s)	67, 142, 184, 268, 269
ScrFI	CCNGG	3 cut(s)	65, 238, 297
SduI	GDGCHC	2 cut(s)	272, 549
SetI	ASST	5 cut(s)	46, 165, 171, 439, 525
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	142, 184
Sse9I	AATT	4 cut(s)	355, 539, 554, 575
SseBI	AGGCCT	1 cut(s)	63
SsiI	CCGC	3 cut(s)	196, 198, 234
SspMI	CTAG	1 cut(s)	305
StuI	AGGCCT	1 cut(s)	63
StyD4I	CCNGG	3 cut(s)	63, 236, 295
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	1 cut(s)	579
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	355, 539, 554, 575
TfiI	GAWTC	2 cut(s)	124, 149
Tru1I	TTAA	2 cut(s)	261, 375
Tru9I	TTAA	2 cut(s)	261, 375
TscAI	CASTG	5 cut(s)	163, 337, 346, 503, 556
TspDTI	ATGAA	4 cut(s)	447, 588, 594, 606
TspRI	CASTG	5 cut(s)	163, 337, 346, 503, 556
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	2 cut(s)	142, 184
XapI	RAATTY	2 cut(s)	539, 575
XceI	RCATGY	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	601
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.