Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010350

Physical Location & Seq

Genomic Coordinates Reverse (-)

36133566 .. 36138297

Gene Structure 4732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTATTTGCAGTAGAAGGAGGAGGGTTCTTCTCGTCTTCAGCTTCTGGGTATAGCAAAGGTTTGGCCCTTCTACTCTTGGGTCACAAGGACGACGATAAACCCATGAGAGTTTCGCCGTGGAATCAGTACCAGTTGGTGGACCAAGAATCTGACTCTCACCTCCAGCTGGCTTCCACGAAGAACCGACTTTCCCGCGGTTGCGCCTCCTTTGTCTGCTTTGGTCGCGCTTCCGCCGGGCTTGACACTCCGTCTCCTCTTAAAGTGGGCCCTGCCCAACAGCAGGATGTCTTGCACGAGTCTGTTGCTTCTGATAAAGGCGGGGATCATATTGCCACCCCTGAGGAGTTTCATACTGCAAGAAAACTTGCTCTCAAAAGTAGCTTGAAGAAGCCATCAAAAAGCATACCAGTTCCTGTCCAGAGTTCTAATGAACATGAAACAAATAGTCAAATTCCAGGCAATGCAGAAAGGAGAAAAGTGCAGTGGACTGATACTTGTGGGAGTGAGCTCGTTGATATCAGAGAATTTGAACCCAGTGAAGCGGATGGATCAGATGATGAATTCAACAATGGGAATGAAAGAAGTTGTTCGTGTGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

21.88

Weight (kDa)

5.36

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22790 AT1G22790
fragaria_vesca	FvH4_2g13060 FvH4_2g13060
malus_domestica	MD05G1032900.v1.1 MD10G1033900.v1.1
prunus_persica	Prupe.8G040000_v2.0.a1
pyrus_communis	pycom05g02390 pycom10g02240
rosa_chinensis	RchiOBHm_Chr6g0274321
rosa_laevigata	RLG00000013554
rosa_multiflora	Rmu_sc0006675.1_g000004 Rmu_sc0007877.1_g000024
rosa_roxburghii	Rroxscaffold_7G00194370
rosa_rugosa	Rorug06G0080800 Rorug06G0080900
rosa_samantha	Rh6AG196000 Rh6BG200200 Rh6CG201100 Rh6DG191900
rosa_wichuraiana	Rw6G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccII	CGCG	2 cut(s)	198, 228
AciI	CCGC	5 cut(s)	196, 198, 234, 321, 545
AclWI	GGATC	2 cut(s)	333, 559
AcsI	RAATTY	3 cut(s)	453, 527, 563
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
AgsI	TTSAA	3 cut(s)	388, 533, 568
AhdI	GACNNNNNGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	457
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	4 cut(s)	44, 169, 384, 511
AluI	AGCT	4 cut(s)	44, 169, 384, 511
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	2 cut(s)	333, 559
AlwNI	CAGNNNCTG	2 cut(s)	47, 416
AoxI	GGCC	2 cut(s)	66, 268
ApaI	GGGCCC	1 cut(s)	272
ApoI	RAATTY	3 cut(s)	453, 527, 563
Asp700I	GAANNNNTTC	1 cut(s)	589
AspLEI	GCGC	2 cut(s)	206, 230
AspS9I	GGNCC	4 cut(s)	67, 142, 268, 269
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	272, 513
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	513
BccI	CCATC	2 cut(s)	403, 542
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	258
Bme1390I	CCNGG	2 cut(s)	238, 459
Bme18I	GGWCC	1 cut(s)	142
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	67, 142, 268, 269
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	2 cut(s)	238, 459
BmrI	ACTGGG	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	119, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 169, 283
Bse1I	ACTGG	3 cut(s)	133, 410, 537
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	119, 196
BseGI	GGATG	2 cut(s)	292, 553
BseLI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	3 cut(s)	133, 410, 537
BseRI	GAGGAG	3 cut(s)	36, 246, 359
BseSI	GKGCMC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	2 cut(s)	198, 228
BshFI	GGCC	2 cut(s)	68, 270
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	68, 270
Bsp120I	GGGCCC	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	272, 513
Bsp143I	GATC	2 cut(s)	325, 551
BspACI	CCGC	5 cut(s)	196, 198, 234, 321, 545
BspANI	GGCC	2 cut(s)	68, 270
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	2 cut(s)	198, 228
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	2 cut(s)	333, 559
BsrDI	GCAATG	1 cut(s)	469
BsrI	ACTGG	3 cut(s)	133, 410, 537
BssECI	CCNNGG	2 cut(s)	119, 196
BssMI	GATC	2 cut(s)	325, 551
BssSI	CACGAG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	2 cut(s)	119, 196
BstF5I	GGATG	2 cut(s)	292, 553
BstFNI	CGCG	2 cut(s)	198, 228
BstHHI	GCGC	2 cut(s)	206, 230
BstKTI	GATC	2 cut(s)	328, 554
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	2 cut(s)	325, 551
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	236, 457
BstSLI	GKGCMC	1 cut(s)	272
BstUI	CGCG	2 cut(s)	198, 228
BstV2I	GAAGAC	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	68, 270
BtgI	CCRYGG	2 cut(s)	119, 196
BtsCI	GGATG	2 cut(s)	292, 553
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	2 cut(s)	491, 544
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	2 cut(s)	47, 416
CfoI	GCGC	2 cut(s)	206, 230
Cfr13I	GGNCC	4 cut(s)	67, 142, 268, 269
Cfr42I	CCGCGG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	2 cut(s)	106, 437
CviJI	RGCY	9 cut(s)	44, 68, 169, 173, 241, 270, 384, 394, 511
CviKI_1	RGCY	9 cut(s)	44, 68, 169, 173, 241, 270, 384, 394, 511
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	327, 553
DpnII	GATC	2 cut(s)	325, 551
DriI	GACNNNNNGTC	1 cut(s)	250
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	511
Eco24I	GRGCYC	2 cut(s)	272, 513
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	24
Eco81I	CCTNAGG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	520
EcoT38I	GRGCYC	2 cut(s)	272, 513
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	2 cut(s)	109, 440
FaiI	YATR	7 cut(s)	54, 107, 330, 354, 407, 438, 605
FatI	CATG	2 cut(s)	105, 436
FauI	CCCGC	2 cut(s)	203, 314
FokI	GGATG	2 cut(s)	299, 560
FriOI	GRGCYC	2 cut(s)	272, 513
GlaI	GCGC	2 cut(s)	205, 229
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	68, 270
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	2 cut(s)	206, 230
Hin1II	CATG	2 cut(s)	109, 440
Hin6I	GCGC	2 cut(s)	204, 228
HinP1I	GCGC	2 cut(s)	204, 228
HinfI	GANTC	4 cut(s)	124, 149, 155, 299
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	142, 489
Hpy188I	TCNGA	4 cut(s)	154, 313, 524, 556
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	2 cut(s)	142, 489
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	11, 80
HpyCH4V	TGCA	5 cut(s)	11, 295, 359, 467, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	109, 440
HspAI	GCGC	2 cut(s)	204, 228
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	325, 551
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	327, 553
MboI	GATC	2 cut(s)	325, 551
MboII	GAAGA	4 cut(s)	22, 30, 193, 400
MhlI	GDGCHC	2 cut(s)	272, 513
MluCI	AATT	3 cut(s)	453, 527, 563
MlyI	GAGTC	2 cut(s)	149, 308
MnlI	CCTC	6 cut(s)	14, 17, 173, 217, 267, 337
MroXI	GAANNNNTTC	1 cut(s)	589
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	2 cut(s)	169, 198
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	238, 459
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	2 cut(s)	198, 228
MwoI	GCNNNNNNNGC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	2 cut(s)	325, 551
NlaIII	CATG	2 cut(s)	109, 440
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	124, 149
PflMI	CCANNNNNTGG	1 cut(s)	139
PleI	GAGTC	2 cut(s)	149, 307
PpsI	GAGTC	2 cut(s)	149, 307
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	270
PspOMI	GGGCCC	1 cut(s)	268
PspPI	GGNCC	4 cut(s)	67, 142, 268, 269
PstNI	CAGNNNCTG	2 cut(s)	47, 416
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	513
SacII	CCGCGG	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	325, 551
Sau96I	GGNCC	4 cut(s)	67, 142, 268, 269
SchI	GAGTC	2 cut(s)	149, 308
ScrFI	CCNGG	2 cut(s)	238, 459
SduI	GDGCHC	2 cut(s)	272, 513
SetI	ASST	6 cut(s)	46, 64, 165, 171, 386, 513
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	3 cut(s)	453, 527, 563
SsiI	CCGC	5 cut(s)	196, 198, 234, 321, 545
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	236, 457
TasI	AATT	3 cut(s)	453, 527, 563
TfiI	GAWTC	2 cut(s)	124, 149
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	2 cut(s)	491, 544
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	5 cut(s)	341, 447, 453, 576, 594
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	491, 544
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	3 cut(s)	453, 527, 563
XmnI	GAANNNNTTC	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.