Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010350

Physical Location & Seq

Genomic Coordinates Reverse (-)

2817712 .. 2821166

Gene Structure 3455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTATTTGCAGTAGAAGGAGGAGGGTTCTTCTCATCTTCAGCTGCTGGGTATAGCAAGGGCCTAGCCGTTCTTCTCTTGGGTCAGAAGAAAGAAGATAAACCCATGAGAGTTTCGCCGTGGAATCAGTACCGGTTGGTGGATCAAGAATCTGACACTGACCTCCAGCTGGCTTCCACAAAGAACCGACTTTCCCGCGGCTGCGCTTCCTTTGTCTGCTTTGGTCGCGCTTCCGCCGGGCTCGACACTCCATCTCCTCTTAAAGTGGGCCCTGCCCAACAGCAGGATATCTTGCCTGGATCTCTTGTTTCTGACGAAGGCAAGGATCATACTGCTGATGCTGATGATGACCATATTGCAAGAAAGGTTGTTGTTAAAAGTAGCCTGAAGAATTCATCCAAAAGAAATCCAGCTTCTGTTGAGAGTGCTAATGAACGTGAAGCATCGAGTGAACTAGGTAGTGATATTCCTGGTCATGCGGAAACGAGGAAAGTGCAGTGGACAGATGTTTGCGGGAGTGAGCTTGTTGAAATCAGGGAATTTGAGCCCAGTGAAATGGACGGATCAGATGATGAGTTCGACAATGGGAATGAAAGAAGTTGTGCATGTGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.19

Weight (kDa)

4.77

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22790 AT1G22790
fragaria_vesca	FvH4_2g13060 FvH4_2g13060
malus_domestica	MD05G1032900.v1.1 MD10G1033900.v1.1
prunus_persica	Prupe.8G040000_v2.0.a1
pyrus_communis	pycom05g02390 pycom10g02240
rosa_chinensis	RchiOBHm_Chr6g0274321
rosa_laevigata	RLG00000013554
rosa_multiflora	Rmu_sc0006675.1_g000004 Rmu_sc0007877.1_g000024
rosa_roxburghii	Rroxscaffold_7G00194370
rosa_rugosa	Rorug06G0080800 Rorug06G0080900
rosa_samantha	Rh6AG196000 Rh6BG200200 Rh6CG201100 Rh6DG191900
rosa_wichuraiana	Rw6G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	198, 228
AciI	CCGC	5 cut(s)	196, 198, 234, 479, 513
AclWI	GGATC	4 cut(s)	150, 307, 333, 571
AcsI	RAATTY	2 cut(s)	391, 539
AcuI	CTGAAG	2 cut(s)	24, 407
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
AgeI	ACCGGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	530
AjnI	CCWGG	2 cut(s)	295, 469
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	4 cut(s)	44, 169, 413, 523
AluI	AGCT	4 cut(s)	44, 169, 413, 523
AlwI	GGATC	4 cut(s)	150, 307, 333, 571
AlwNI	CAGNNNCTG	2 cut(s)	47, 416
AoxI	GGCC	2 cut(s)	61, 268
ApaI	GGGCCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	44, 201
ApoI	RAATTY	2 cut(s)	391, 539
AsiGI	ACCGGT	1 cut(s)	132
AspLEI	GCGC	2 cut(s)	206, 230
AspS9I	GGNCC	3 cut(s)	61, 268, 269
AsuC2I	CCSGG	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	272
BanII	GRGCYC	3 cut(s)	243, 272, 549
BbvI	GCAGC	2 cut(s)	31, 188
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	2 cut(s)	53, 103
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciT130I	CCWGG	2 cut(s)	297, 471
BcnI	CCSGG	1 cut(s)	238
BfaI	CTAG	2 cut(s)	65, 455
BisI	GCNGC	3 cut(s)	45, 199, 202
BlsI	GCNGC	3 cut(s)	46, 200, 203
Bme1390I	CCNGG	3 cut(s)	238, 297, 471
BmgT120I	GGNCC	3 cut(s)	61, 268, 269
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	3 cut(s)	238, 297, 471
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	328, 452
BmuI	ACTGGG	1 cut(s)	543
BpmI	CTGGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	119, 196
BsaWI	WCCGGW	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 169, 283
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	297, 471
BseDI	CCNNGG	2 cut(s)	119, 196
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	2 cut(s)	36, 246
BseSI	GKGCMC	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	31, 188
BseYI	CCCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	2 cut(s)	198, 228
BshFI	GGCC	2 cut(s)	63, 270
BshTI	ACCGGT	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	133, 237
BslI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
BsnI	GGCC	2 cut(s)	63, 270
Bsp120I	GGGCCC	1 cut(s)	268
Bsp1286I	GDGCHC	3 cut(s)	243, 272, 549
Bsp143I	GATC	4 cut(s)	142, 299, 325, 563
BspACI	CCGC	5 cut(s)	196, 198, 234, 479, 513
BspANI	GGCC	2 cut(s)	63, 270
BspFNI	CGCG	2 cut(s)	198, 228
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	4 cut(s)	150, 307, 333, 571
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	119, 196
BssMI	GATC	4 cut(s)	142, 299, 325, 563
Bst2UI	CCWGG	2 cut(s)	297, 471
BstC8I	GCNNGC	1 cut(s)	171
BstDSI	CCRYGG	2 cut(s)	119, 196
BstF5I	GGATG	1 cut(s)	395
BstFNI	CGCG	2 cut(s)	198, 228
BstHHI	GCGC	2 cut(s)	206, 230
BstKTI	GATC	4 cut(s)	145, 302, 328, 566
BstMBI	GATC	4 cut(s)	142, 299, 325, 563
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	2 cut(s)	297, 471
BstNSI	RCATGY	1 cut(s)	609
BstSCI	CCNGG	3 cut(s)	236, 295, 469
BstSLI	GKGCMC	1 cut(s)	272
BstUI	CGCG	2 cut(s)	198, 228
BstV1I	GCAGC	2 cut(s)	31, 188
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	63, 270
BtgI	CCRYGG	2 cut(s)	119, 196
BtsCI	GGATG	1 cut(s)	395
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	3 cut(s)	156, 503, 556
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	2 cut(s)	47, 416
CfoI	GCGC	2 cut(s)	206, 230
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	3 cut(s)	61, 268, 269
Cfr42I	CCGCGG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	130
CspAI	ACCGGT	1 cut(s)	132
CviAII	CATG	3 cut(s)	106, 476, 606
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	4 cut(s)	144, 301, 327, 565
DpnII	GATC	4 cut(s)	142, 299, 325, 563
EciI	GGCGGA	1 cut(s)	223
Eco24I	GRGCYC	3 cut(s)	243, 272, 549
Eco32I	GATATC	1 cut(s)	289
Eco57I	CTGAAG	2 cut(s)	24, 407
EcoO109I	RGGNCCY	2 cut(s)	61, 269
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	295, 469
EcoRV	GATATC	1 cut(s)	289
EcoT38I	GRGCYC	3 cut(s)	243, 272, 549
FaeI	CATG	3 cut(s)	109, 479, 609
FaiI	YATR	7 cut(s)	54, 107, 330, 354, 477, 607, 617
FatI	CATG	3 cut(s)	105, 475, 605
FauI	CCCGC	2 cut(s)	203, 506
Fnu4HI	GCNGC	3 cut(s)	45, 199, 202
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	3 cut(s)	243, 272, 549
Fsp4HI	GCNGC	3 cut(s)	45, 199, 202
FspBI	CTAG	2 cut(s)	65, 455
GlaI	GCGC	2 cut(s)	205, 229
GluI	GCNGC	3 cut(s)	45, 199, 202
GsaI	CCCAGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	63, 270
HapII	CCGG	2 cut(s)	133, 237
HhaI	GCGC	2 cut(s)	206, 230
Hin1II	CATG	3 cut(s)	109, 479, 609
Hin6I	GCGC	2 cut(s)	204, 228
HinP1I	GCGC	2 cut(s)	204, 228
HinfI	GANTC	2 cut(s)	124, 149
HpaII	CCGG	2 cut(s)	133, 237
Hpy166II	GTNNAC	2 cut(s)	452, 501
Hpy188I	TCNGA	4 cut(s)	87, 154, 313, 568
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	2 cut(s)	452, 501
HpyAV	CCTTC	2 cut(s)	11, 311
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	4 cut(s)	11, 359, 496, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	3 cut(s)	109, 479, 609
HspAI	GCGC	2 cut(s)	204, 228
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	142, 299, 325, 563
Lsp1109I	GCAGC	2 cut(s)	31, 188
LweI	GCATC	2 cut(s)	328, 452
MaeI	CTAG	2 cut(s)	65, 455
MaeII	ACGT	1 cut(s)	436
MalI	GATC	4 cut(s)	144, 301, 327, 565
MboI	GATC	4 cut(s)	142, 299, 325, 563
MboII	GAAGA	6 cut(s)	22, 30, 65, 100, 107, 400
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	3 cut(s)	243, 272, 549
MluCI	AATT	2 cut(s)	391, 539
MnlI	CCTC	5 cut(s)	14, 17, 173, 267, 480
MseI	TTAA	2 cut(s)	261, 375
MspA1I	CMGCKG	3 cut(s)	44, 169, 198
MspI	CCGG	2 cut(s)	133, 237
MspR9I	CCNGG	3 cut(s)	238, 297, 471
MvaI	CCWGG	2 cut(s)	297, 471
MvnI	CGCG	2 cut(s)	198, 228
MwoI	GCNNNNNNNGC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	4 cut(s)	142, 299, 325, 563
NlaIII	CATG	3 cut(s)	109, 479, 609
NlaIV	GGNNCC	1 cut(s)	270
NspI	RCATGY	1 cut(s)	609
PfeI	GAWTC	2 cut(s)	124, 149
PinAI	ACCGGT	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	46, 200, 203
Psp6I	CCWGG	2 cut(s)	295, 469
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	2 cut(s)	295, 469
PspN4I	GGNNCC	1 cut(s)	270
PspOMI	GGGCCC	1 cut(s)	268
PspPI	GGNCC	3 cut(s)	61, 268, 269
PstNI	CAGNNNCTG	2 cut(s)	47, 416
PsuI	RGATCY	1 cut(s)	299
PvuII	CAGCTG	2 cut(s)	44, 169
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacII	CCGCGG	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	261, 375
SatI	GCNGC	3 cut(s)	45, 199, 202
Sau3AI	GATC	4 cut(s)	142, 299, 325, 563
Sau96I	GGNCC	3 cut(s)	61, 268, 269
ScrFI	CCNGG	3 cut(s)	238, 297, 471
SduI	GDGCHC	3 cut(s)	243, 272, 549
SetI	ASST	8 cut(s)	46, 165, 171, 369, 415, 439, 460, 525
SfaNI	GCATC	2 cut(s)	328, 452
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	391, 539
SsiI	CCGC	5 cut(s)	196, 198, 234, 479, 513
SspMI	CTAG	2 cut(s)	65, 455
StyD4I	CCNGG	3 cut(s)	236, 295, 469
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	3 cut(s)	243, 446, 579
TasI	AATT	2 cut(s)	391, 539
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	124, 149
Tru1I	TTAA	2 cut(s)	261, 375
Tru9I	TTAA	2 cut(s)	261, 375
TscAI	CASTG	3 cut(s)	163, 503, 556
TseI	GCWGC	2 cut(s)	44, 201
TspDTI	ATGAA	3 cut(s)	384, 447, 606
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	3 cut(s)	163, 503, 556
XapI	RAATTY	2 cut(s)	391, 539
XceI	RCATGY	1 cut(s)	609
XspI	CTAG	2 cut(s)	65, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.