Rw6G017130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010350
Physical Location & Seq
Forward (+)
33972996 .. 33978093
5098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017130.1

Sequence Viewer

Length: 435 bp
ATGTTATTTGCAGTAGAAGGAGGAGGGTTCTTCTCGTCTTCAGCTTCTGGGTATAGCAAAGGTTTGGCCCTTCTACTCTTGGGTCACAAGGACGACGACGATAAACCCATGAGAGTTTCGCCGTGGAATCAGTACCAGTTGGTGGACCAAGAATCTGACTCTCACCTCCAGCTGGCTTCCACGAAGAACCGACTTTCCCGCGGTTGCGCCTCCTTTGTCTGCTTTGGTCGCGCTTCCGCCGGGCTTGACACTCCGTCTCCTCTTAAAGTGGGCCCTGCCCAACAGCAGGATGTCTTGCACGAGTCTGTTGCTTCTGATAAAGGCGAGGATCATACTGCTACCCCTGAGGAGTTTCATACTGCAAGAAAACTTTCTCTCAAAAGTAGCTTGAAGAAGCCATCAAAAAGCATACCAGTTCCTGTTCCAGAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.53

Weight (kDa)

6.5

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 142
AccII CGCG 2 cut(s) 201, 231
AciI CCGC 3 cut(s) 199, 201, 237
AclWI GGATC 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 142, 172, 286
AgsI TTSAA 1 cut(s) 391
AhdI GACNNNNNGTC 1 cut(s) 253
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 3 cut(s) 44, 172, 387
AluI AGCT 3 cut(s) 44, 172, 387
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 336
AlwNI CAGNNNCTG 2 cut(s) 47, 419
AoxI GGCC 2 cut(s) 66, 271
ApaI GGGCCC 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 370
AspLEI GCGC 2 cut(s) 209, 233
AspS9I GGNCC 4 cut(s) 67, 145, 271, 272
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 145
AxyI CCTNAGG 1 cut(s) 345
BaeGI GKGCMC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 275
BauI CACGAG 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 30
BccI CCATC 1 cut(s) 406
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 145
BmeRI GACNNNNNGTC 1 cut(s) 253
BmgT120I GGNCC 4 cut(s) 67, 145, 271, 272
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 122, 199
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 172, 286
Bse1I ACTGG 2 cut(s) 136, 413
Bse21I CCTNAGG 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 122, 199
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 3 cut(s) 142, 172, 286
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 2 cut(s) 136, 413
BseRI GAGGAG 3 cut(s) 36, 249, 362
BseSI GKGCMC 1 cut(s) 275
Bsh1236I CGCG 2 cut(s) 201, 231
BshFI GGCC 2 cut(s) 68, 273
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 3 cut(s) 142, 172, 286
BsmAI GTCTC 1 cut(s) 261
BsmBI CGTCTC 1 cut(s) 261
BsnI GGCC 2 cut(s) 68, 273
Bsp120I GGGCCC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 3 cut(s) 199, 201, 237
BspANI GGCC 2 cut(s) 68, 273
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 2 cut(s) 201, 231
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 1 cut(s) 336
BsrI ACTGG 2 cut(s) 136, 413
BssECI CCNNGG 2 cut(s) 122, 199
BssMI GATC 1 cut(s) 328
BssSI CACGAG 1 cut(s) 299
Bst2BI CACGAG 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 2 cut(s) 122, 199
BstF5I GGATG 1 cut(s) 295
BstFNI CGCG 2 cut(s) 201, 231
BstHHI GCGC 2 cut(s) 209, 233
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 239
BstSLI GKGCMC 1 cut(s) 275
BstUI CGCG 2 cut(s) 201, 231
BstV2I GAAGAC 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 2 cut(s) 68, 273
BtgI CCRYGG 2 cut(s) 122, 199
BtsCI GGATG 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 2 cut(s) 47, 419
CfoI GCGC 2 cut(s) 209, 233
Cfr13I GGNCC 4 cut(s) 67, 145, 271, 272
Cfr42I CCGCGG 1 cut(s) 202
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 109
CviJI RGCY 8 cut(s) 44, 68, 172, 176, 244, 273, 387, 397
CviKI_1 RGCY 8 cut(s) 44, 68, 172, 176, 244, 273, 387, 397
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
DriI GACNNNNNGTC 1 cut(s) 253
Eam1105I GACNNNNNGTC 1 cut(s) 253
EciI GGCGGA 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 24
Eco81I CCTNAGG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 1 cut(s) 112
FaiI YATR 5 cut(s) 54, 110, 333, 357, 410
FatI CATG 1 cut(s) 108
FauI CCCGC 1 cut(s) 206
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 1 cut(s) 275
GlaI GCGC 2 cut(s) 208, 232
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 68, 273
HapII CCGG 1 cut(s) 240
HhaI GCGC 2 cut(s) 209, 233
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 2 cut(s) 207, 231
HinP1I GCGC 2 cut(s) 207, 231
HinfI GANTC 4 cut(s) 127, 152, 158, 302
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 157, 316
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 2 cut(s) 98, 101
HpyAV CCTTC 2 cut(s) 11, 80
HpyCH4V TGCA 3 cut(s) 11, 298, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 2 cut(s) 207, 231
KspI CCGCGG 1 cut(s) 202
Kzo9I GATC 1 cut(s) 328
LpnPI CCDG 9 cut(s) 33, 149, 158, 182, 253, 272, 288, 357, 426
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 4 cut(s) 22, 30, 196, 403
MhlI GDGCHC 1 cut(s) 275
MlyI GAGTC 2 cut(s) 152, 311
MnlI CCTC 7 cut(s) 14, 17, 176, 220, 270, 319, 340
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 2 cut(s) 172, 201
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 241
MvnI CGCG 2 cut(s) 201, 231
MwoI GCNNNNNNNGC 1 cut(s) 228
NciI CCSGG 1 cut(s) 241
NdeII GATC 1 cut(s) 328
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 127, 152
PflMI CCANNNNNTGG 1 cut(s) 142
PleI GAGTC 2 cut(s) 152, 310
PpsI GAGTC 2 cut(s) 152, 310
PspN4I GGNNCC 1 cut(s) 273
PspOMI GGGCCC 1 cut(s) 271
PspPI GGNCC 4 cut(s) 67, 145, 271, 272
PstNI CAGNNNCTG 2 cut(s) 47, 419
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacII CCGCGG 1 cut(s) 202
SaqAI TTAA 1 cut(s) 264
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 4 cut(s) 67, 145, 271, 272
SchI GAGTC 2 cut(s) 152, 311
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 275
SetI ASST 5 cut(s) 46, 64, 168, 174, 389
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SinI GGWCC 1 cut(s) 145
SsiI CCGC 3 cut(s) 199, 201, 237
StyD4I CCNGG 1 cut(s) 239
TfiI GAWTC 2 cut(s) 127, 152
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 344
TspGWI ACGGA 1 cut(s) 243
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.