Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010350

Physical Location & Seq

Genomic Coordinates Forward (+)

35195360 .. 35199058

Gene Structure 3699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG196000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTATTTGCAGTAGAAGGAGGAGGGTTCTTCTCGTCTTCAGCTTCTGGGTATAGCAAAGGTTTGGCCCTTCTACTCTTGGGTCACAAGGACGACGACGATAAACCCATGAGAGTTTCGCCGTGGAATCAGTACCAGTTGGTGGACCAAGAATCTGACTCTCACCTCCAGCTGGCTTCCACGAAGAACCGACTTTCCCGCGGTTGCGCCTCCTTTGTCTGCTTTGGTCGCGCTTCCGCCGGGCTTGACACTCCGTCTCCTCTTAAAGTGGGCCCTGCCCAACAGCAGGATGTCTTGCACGAGTCTGTTGCTTCTGATAAAGGCGAGGATCATACTGCTACCCCTGAGGAGTTTCATACTGCAAGAAAACTTTCTCTCAAAAGTAGCTTGAAGAAGCCATCAAAAAGCATACCAGTTCCTGTCCAGAGTTCTAATGAACATGAAACAAATAGTCAAATTCCAGGCAATGCAGAAAGGAGAAAAGTGCAGTGGACTGATACTTGTGGGAGTGAGCTCGTTGATATCAGAGAATTTGAACCCAGTGAAGCGGATGGATCAGATGATGAATTCAACAATGGGAATGAAAGAAGTTGTTCGTGTGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

22.07

Weight (kDa)

5.13

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22790 AT1G22790
fragaria_vesca	FvH4_2g13060 FvH4_2g13060
malus_domestica	MD05G1032900.v1.1 MD10G1033900.v1.1
prunus_persica	Prupe.8G040000_v2.0.a1
pyrus_communis	pycom05g02390 pycom10g02240
rosa_chinensis	RchiOBHm_Chr6g0274321
rosa_laevigata	RLG00000013554
rosa_multiflora	Rmu_sc0006675.1_g000004 Rmu_sc0007877.1_g000024
rosa_roxburghii	Rroxscaffold_7G00194370
rosa_rugosa	Rorug06G0080800 Rorug06G0080900
rosa_samantha	Rh6AG196000 Rh6BG200200 Rh6CG201100 Rh6DG191900
rosa_wichuraiana	Rw6G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccII	CGCG	2 cut(s)	201, 231
AciI	CCGC	4 cut(s)	199, 201, 237, 548
AclWI	GGATC	2 cut(s)	336, 562
AcsI	RAATTY	3 cut(s)	456, 530, 566
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	3 cut(s)	142, 172, 286
AgsI	TTSAA	3 cut(s)	391, 536, 571
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	460
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	4 cut(s)	44, 172, 387, 514
AluI	AGCT	4 cut(s)	44, 172, 387, 514
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	2 cut(s)	336, 562
AlwNI	CAGNNNCTG	2 cut(s)	47, 419
AoxI	GGCC	2 cut(s)	66, 271
ApaI	GGGCCC	1 cut(s)	275
ApoI	RAATTY	3 cut(s)	456, 530, 566
Asp700I	GAANNNNTTC	2 cut(s)	370, 592
AspLEI	GCGC	2 cut(s)	209, 233
AspS9I	GGNCC	4 cut(s)	67, 145, 271, 272
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	145
AxyI	CCTNAGG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	275
BanII	GRGCYC	2 cut(s)	275, 516
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	516
BccI	CCATC	2 cut(s)	406, 545
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	261
Bme1390I	CCNGG	2 cut(s)	241, 462
Bme18I	GGWCC	1 cut(s)	145
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmgT120I	GGNCC	4 cut(s)	67, 145, 271, 272
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	241, 462
BmrI	ACTGGG	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	122, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 172, 286
Bse1I	ACTGG	3 cut(s)	136, 413, 540
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	122, 199
BseGI	GGATG	2 cut(s)	295, 556
BseLI	CCNNNNNNNGG	3 cut(s)	142, 172, 286
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	3 cut(s)	136, 413, 540
BseRI	GAGGAG	3 cut(s)	36, 249, 362
BseSI	GKGCMC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	506
Bsh1236I	CGCG	2 cut(s)	201, 231
BshFI	GGCC	2 cut(s)	68, 273
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	3 cut(s)	142, 172, 286
BsmAI	GTCTC	1 cut(s)	261
BsmBI	CGTCTC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	68, 273
Bsp120I	GGGCCC	1 cut(s)	271
Bsp1286I	GDGCHC	2 cut(s)	275, 516
Bsp143I	GATC	2 cut(s)	328, 554
BspACI	CCGC	4 cut(s)	199, 201, 237, 548
BspANI	GGCC	2 cut(s)	68, 273
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	2 cut(s)	201, 231
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	336, 562
BsrDI	GCAATG	1 cut(s)	472
BsrI	ACTGG	3 cut(s)	136, 413, 540
BssECI	CCNNGG	2 cut(s)	122, 199
BssMI	GATC	2 cut(s)	328, 554
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	2 cut(s)	122, 199
BstF5I	GGATG	2 cut(s)	295, 556
BstFNI	CGCG	2 cut(s)	201, 231
BstHHI	GCGC	2 cut(s)	209, 233
BstKTI	GATC	2 cut(s)	331, 557
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	328, 554
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	2 cut(s)	239, 460
BstSLI	GKGCMC	1 cut(s)	275
BstUI	CGCG	2 cut(s)	201, 231
BstV2I	GAAGAC	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	68, 273
BtgI	CCRYGG	2 cut(s)	122, 199
BtsCI	GGATG	2 cut(s)	295, 556
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	494, 547
Cac8I	GCNNGC	1 cut(s)	174
CaiI	CAGNNNCTG	2 cut(s)	47, 419
CfoI	GCGC	2 cut(s)	209, 233
Cfr13I	GGNCC	4 cut(s)	67, 145, 271, 272
Cfr42I	CCGCGG	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	2 cut(s)	109, 440
CviJI	RGCY	9 cut(s)	44, 68, 172, 176, 244, 273, 387, 397, 514
CviKI_1	RGCY	9 cut(s)	44, 68, 172, 176, 244, 273, 387, 397, 514
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	2 cut(s)	330, 556
DpnII	GATC	2 cut(s)	328, 554
DriI	GACNNNNNGTC	1 cut(s)	253
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	514
Eco24I	GRGCYC	2 cut(s)	275, 516
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	24
Eco81I	CCTNAGG	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	514
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	460
EcoRV	GATATC	1 cut(s)	523
EcoT38I	GRGCYC	2 cut(s)	275, 516
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	2 cut(s)	112, 443
FaiI	YATR	7 cut(s)	54, 110, 333, 357, 410, 441, 608
FatI	CATG	2 cut(s)	108, 439
FauI	CCCGC	1 cut(s)	206
FokI	GGATG	2 cut(s)	302, 563
FriOI	GRGCYC	2 cut(s)	275, 516
GlaI	GCGC	2 cut(s)	208, 232
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	68, 273
HapII	CCGG	1 cut(s)	240
HhaI	GCGC	2 cut(s)	209, 233
Hin1II	CATG	2 cut(s)	112, 443
Hin6I	GCGC	2 cut(s)	207, 231
HinP1I	GCGC	2 cut(s)	207, 231
HinfI	GANTC	4 cut(s)	127, 152, 158, 302
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	145, 492
Hpy188I	TCNGA	4 cut(s)	157, 316, 527, 559
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	2 cut(s)	145, 492
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	2 cut(s)	11, 80
HpyCH4V	TGCA	5 cut(s)	11, 298, 362, 470, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	112, 443
HspAI	GCGC	2 cut(s)	207, 231
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	328, 554
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	330, 556
MboI	GATC	2 cut(s)	328, 554
MboII	GAAGA	4 cut(s)	22, 30, 196, 403
MhlI	GDGCHC	2 cut(s)	275, 516
MluCI	AATT	3 cut(s)	456, 530, 566
MlyI	GAGTC	2 cut(s)	152, 311
MnlI	CCTC	7 cut(s)	14, 17, 176, 220, 270, 319, 340
MroXI	GAANNNNTTC	2 cut(s)	370, 592
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	172, 201
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	241, 462
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	2 cut(s)	201, 231
MwoI	GCNNNNNNNGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	2 cut(s)	328, 554
NlaIII	CATG	2 cut(s)	112, 443
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	83
PdmI	GAANNNNTTC	2 cut(s)	370, 592
PfeI	GAWTC	2 cut(s)	127, 152
PflMI	CCANNNNNTGG	1 cut(s)	142
PleI	GAGTC	2 cut(s)	152, 310
PpsI	GAGTC	2 cut(s)	152, 310
Psp124BI	GAGCTC	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	273
PspOMI	GGGCCC	1 cut(s)	271
PspPI	GGNCC	4 cut(s)	67, 145, 271, 272
PstNI	CAGNNNCTG	2 cut(s)	47, 419
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	516
SacII	CCGCGG	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	328, 554
Sau96I	GGNCC	4 cut(s)	67, 145, 271, 272
SchI	GAGTC	2 cut(s)	152, 311
ScrFI	CCNGG	2 cut(s)	241, 462
SduI	GDGCHC	2 cut(s)	275, 516
SetI	ASST	6 cut(s)	46, 64, 168, 174, 389, 516
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	3 cut(s)	456, 530, 566
SsiI	CCGC	4 cut(s)	199, 201, 237, 548
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	2 cut(s)	239, 460
TasI	AATT	3 cut(s)	456, 530, 566
TfiI	GAWTC	2 cut(s)	127, 152
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	494, 547
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	5 cut(s)	344, 450, 456, 579, 597
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	494, 547
Van91I	CCANNNNNTGG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	3 cut(s)	456, 530, 566
XmnI	GAANNNNTTC	2 cut(s)	370, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.