Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010350

Physical Location & Seq

Genomic Coordinates Forward (+)

11462096 .. 11467921

Gene Structure 5826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTTATTTGCAGTAGAAGGAGGAGGGTTCTTCTCGTCTTCGGCTTCTGGGTATAGCAAAGGCTTGGCCCTTCTTCTCTTGGGTCACAAGGACGACGATAAACCCATGAGAGTTTCGCCGTGGAATCAGTACCAGTTGGTGGACCAAGAATCTGACACTCACCTCCAGCTGGCTTCCACGAAAAACCGACTTTCCCGCGGTTGCGCCTCCTTTGTCTGCTTTGGTCGCGCTTCCGCCGGGCTTGACACTCCGTCTCCTCTTAAAGTAGGCCCTACCCAACAGCAGGATGTCTTGCACGAGTCTGTTGCTTCTGACAAAGGCGACGATCATACTGCTGCTGCCCCTGAGGAGTTTCATACTGCAAAAAAAGTTGTTCTGAAAAGTAGCTTGAAGAAGCCATCAAAAAGGTTACCAGTTCCTATTGAGAGTTCTACTGAGCGTGAATTATCTAGTGATACAAATAGTCACATTCAAGGCAATGACGAAAAGAGGAAAGTGCAGTGGACTGATACTTGTGGGAGCGAGCTTGTTGATATCAGAGAATTTGAGCCCAGTGAAGCGGATGGATCGGATGATGAATTCAACAATGGGAATGAAAGAAGTTGTTCATGTGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.55

Weight (kDa)

5.15

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22790 AT1G22790
fragaria_vesca	FvH4_2g13060 FvH4_2g13060
malus_domestica	MD05G1032900.v1.1 MD10G1033900.v1.1
prunus_persica	Prupe.8G040000_v2.0.a1
pyrus_communis	pycom05g02390 pycom10g02240
rosa_chinensis	RchiOBHm_Chr6g0274321
rosa_laevigata	RLG00000013554
rosa_multiflora	Rmu_sc0006675.1_g000004 Rmu_sc0007877.1_g000024
rosa_roxburghii	Rroxscaffold_7G00194370
rosa_rugosa	Rorug06G0080800 Rorug06G0080900
rosa_samantha	Rh6AG196000 Rh6BG200200 Rh6CG201100 Rh6DG191900
rosa_wichuraiana	Rw6G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccII	CGCG	2 cut(s)	198, 228
AciI	CCGC	4 cut(s)	196, 198, 234, 560
AclWI	GGATC	1 cut(s)	574
AcsI	RAATTY	2 cut(s)	542, 578
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
AgsI	TTSAA	3 cut(s)	391, 473, 583
AhdI	GACNNNNNGTC	1 cut(s)	250
AluBI	AGCT	3 cut(s)	169, 387, 526
AluI	AGCT	3 cut(s)	169, 387, 526
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	574
AoxI	GGCC	2 cut(s)	66, 268
ApeKI	GCWGC	2 cut(s)	335, 338
ApoI	RAATTY	2 cut(s)	542, 578
Asp700I	GAANNNNTTC	1 cut(s)	604
AspLEI	GCGC	2 cut(s)	206, 230
AspS9I	GGNCC	3 cut(s)	67, 142, 269
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	552
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	322, 325
BccI	CCATC	2 cut(s)	406, 557
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	4 cut(s)	287, 314, 321, 348
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	450
BisI	GCNGC	2 cut(s)	336, 339
BlsI	GCNGC	2 cut(s)	337, 340
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	142
BmeRI	GACNNNNNGTC	1 cut(s)	250
BmgT120I	GGNCC	3 cut(s)	67, 142, 269
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	546
BmuI	ACTGGG	1 cut(s)	546
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	119, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 169, 283
Bse1I	ACTGG	3 cut(s)	133, 413, 552
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	484
BseDI	CCNNGG	2 cut(s)	119, 196
BseGI	GGATG	3 cut(s)	292, 568, 577
BseLI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	336, 426
BseNI	ACTGG	3 cut(s)	133, 413, 552
BseRI	GAGGAG	3 cut(s)	36, 246, 362
BseXI	GCAGC	2 cut(s)	322, 325
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	2 cut(s)	198, 228
BshFI	GGCC	2 cut(s)	68, 270
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	139, 169, 283
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	68, 270
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	2 cut(s)	325, 566
BspACI	CCGC	4 cut(s)	196, 198, 234, 560
BspANI	GGCC	2 cut(s)	68, 270
BspCNI	CTCAG	2 cut(s)	337, 427
BspFNI	CGCG	2 cut(s)	198, 228
BspPI	GGATC	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	484
BsrI	ACTGG	3 cut(s)	133, 413, 552
BssECI	CCNNGG	2 cut(s)	119, 196
BssMI	GATC	2 cut(s)	325, 566
BssSI	CACGAG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	171, 524
BstDEI	CTNAG	2 cut(s)	345, 435
BstDSI	CCRYGG	2 cut(s)	119, 196
BstEII	GGTNACC	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	292, 568, 577
BstFNI	CGCG	2 cut(s)	198, 228
BstHHI	GCGC	2 cut(s)	206, 230
BstKTI	GATC	2 cut(s)	328, 569
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	2 cut(s)	325, 566
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstPI	GGTNACC	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	236
BstUI	CGCG	2 cut(s)	198, 228
BstV1I	GCAGC	2 cut(s)	322, 325
BstV2I	GAAGAC	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	68, 270
BtgI	CCRYGG	2 cut(s)	119, 196
BtsCI	GGATG	3 cut(s)	292, 568, 577
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	2 cut(s)	506, 559
Cac8I	GCNNGC	2 cut(s)	171, 524
CfoI	GCGC	2 cut(s)	206, 230
Cfr13I	GGNCC	3 cut(s)	67, 142, 269
Cfr42I	CCGCGG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	2 cut(s)	106, 609
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	2 cut(s)	345, 435
DpnI	GATC	2 cut(s)	327, 568
DpnII	GATC	2 cut(s)	325, 566
DriI	GACNNNNNGTC	1 cut(s)	250
Eam1105I	GACNNNNNGTC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	345
Eco91I	GGTNACC	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	578
EcoRV	GATATC	1 cut(s)	535
EcoT38I	GRGCYC	1 cut(s)	552
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	2 cut(s)	109, 612
FaiI	YATR	6 cut(s)	54, 107, 330, 357, 610, 620
FatI	CATG	2 cut(s)	105, 608
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	336, 339
FokI	GGATG	3 cut(s)	299, 575, 584
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	2 cut(s)	336, 339
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	2 cut(s)	205, 229
GluI	GCNGC	2 cut(s)	336, 339
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	68, 270
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	2 cut(s)	206, 230
Hin1II	CATG	2 cut(s)	109, 612
Hin6I	GCGC	2 cut(s)	204, 228
HinP1I	GCGC	2 cut(s)	204, 228
HinfI	GANTC	3 cut(s)	124, 149, 299
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	142, 504
Hpy188I	TCNGA	5 cut(s)	154, 313, 378, 539, 571
Hpy8I	GTNNAC	2 cut(s)	142, 504
Hpy99I	CGWCG	2 cut(s)	98, 326
HpyAV	CCTTC	2 cut(s)	11, 80
HpyCH4V	TGCA	4 cut(s)	11, 295, 362, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	2 cut(s)	345, 435
Hsp92II	CATG	2 cut(s)	109, 612
HspAI	GCGC	2 cut(s)	204, 228
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	325, 566
LmnI	GCTCC	1 cut(s)	519
LpnPI	CCDG	9 cut(s)	33, 146, 155, 179, 250, 269, 357, 426, 565
Lsp1109I	GCAGC	2 cut(s)	322, 325
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	3 cut(s)	83, 408, 464
MalI	GATC	2 cut(s)	327, 568
MboI	GATC	2 cut(s)	325, 566
MboII	GAAGA	4 cut(s)	22, 30, 65, 403
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	3 cut(s)	443, 542, 578
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	7 cut(s)	14, 17, 173, 217, 267, 340, 483
MroXI	GAANNNNTTC	1 cut(s)	604
MseI	TTAA	1 cut(s)	261
MspA1I	CMGCKG	2 cut(s)	169, 198
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	238
MvnI	CGCG	2 cut(s)	198, 228
MwoI	GCNNNNNNNGC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	2 cut(s)	325, 566
NlaIII	CATG	2 cut(s)	109, 612
NmuCI	GTSAC	2 cut(s)	83, 464
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	124, 149
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	337, 340
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PspEI	GGTNACC	1 cut(s)	408
PspPI	GGNCC	3 cut(s)	67, 142, 269
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacII	CCGCGG	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	336, 339
Sau3AI	GATC	2 cut(s)	325, 566
Sau96I	GGNCC	3 cut(s)	67, 142, 269
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	552
SetI	ASST	5 cut(s)	165, 171, 389, 410, 528
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	3 cut(s)	443, 542, 578
SsiI	CCGC	4 cut(s)	196, 198, 234, 560
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	236
TasI	AATT	3 cut(s)	443, 542, 578
TfiI	GAWTC	2 cut(s)	124, 149
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	2 cut(s)	506, 559
TseFI	GTSAC	2 cut(s)	83, 464
TseI	GCWGC	2 cut(s)	335, 338
Tsp45I	GTSAC	2 cut(s)	83, 464
TspDTI	ATGAA	4 cut(s)	344, 591, 597, 609
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	506, 559
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	2 cut(s)	542, 578
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.