Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010350

Physical Location & Seq

Genomic Coordinates Forward (+)

8069377 .. 8071593

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTACTGGCAGTAGAAGGAGGGGGTTTATTCTCAGCGTCCGCGTCTGGGTATAGTAAGGGATTGACCCTTCTTTTCTCTGGTGATAAAGACGTAGATAGGCCCATGAGAGTTGTCCCGTGGAATCACTACCAGGTGGTTGACCAAGAGCCTGAGGCTGACCCTGTTCTTCAGCTGGATTCTATTAAGAACCGAGTTTCCCGCGGTTGCGCTGCTTCCTTCAGTTGTTTTGGTGGCGCTTCCGCGGGACTTGAGACCCCTTCTCCTCTTAAAGTTGAACCTGTGCAGCAGCAGCATCGTGAAATATCATCACCAGAGTCTGTTGTTGTTGTTTCTGAAAAGGGTAAAGACCAAATAAGTGAAGCTGATAATGGCAGCAGCAAAGAAGCTTTCAAACTCTCGTTGAGGAGTAGCTTGAAGAGGCCCTCTGTTGCGGAATCACGCTCTCTAGAAGATATAAAAGAATACGAGACGTTGAGTGTGGATGGTAGCGATCTCACTGGTGACATGGCAAGGCGGAAAGTTCAGTGGCCTGATGCTTGTGGTAGTGAACTCACTCAAGTTAGAGAATTTGAGCCGAGTGAGATGGGATTATCAGATGAAGAATGGGAGGTAGGACGACAAAGAACATGTTCGTGTGTGATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.55

Weight (kDa)

4.77

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22790 AT1G22790
fragaria_vesca	FvH4_2g13060 FvH4_2g13060
malus_domestica	MD05G1032900.v1.1 MD10G1033900.v1.1
prunus_persica	Prupe.8G040000_v2.0.a1
pyrus_communis	pycom05g02390 pycom10g02240
rosa_chinensis	RchiOBHm_Chr6g0274321
rosa_laevigata	RLG00000013554
rosa_multiflora	Rmu_sc0006675.1_g000004 Rmu_sc0007877.1_g000024
rosa_roxburghii	Rroxscaffold_7G00194370
rosa_rugosa	Rorug06G0080800 Rorug06G0080900
rosa_samantha	Rh6AG196000 Rh6BG200200 Rh6CG201100 Rh6DG191900
rosa_wichuraiana	Rw6G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	44, 204, 245
AciI	CCGC	7 cut(s)	42, 202, 204, 243, 245, 434, 517
AcsI	RAATTY	1 cut(s)	569
AcuI	CTGAAG	2 cut(s)	155, 205
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	3 cut(s)	278, 394, 418
AjnI	CCWGG	1 cut(s)	132
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	4 cut(s)	175, 365, 389, 414
AluI	AGCT	4 cut(s)	175, 365, 389, 414
Alw26I	GTCTC	2 cut(s)	248, 464
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	3 cut(s)	101, 422, 530
ApeKI	GCWGC	6 cut(s)	212, 286, 289, 292, 375, 378
ApoI	RAATTY	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	631
AspLEI	GCGC	2 cut(s)	212, 239
AspS9I	GGNCC	2 cut(s)	102, 423
AsuHPI	GGTGA	3 cut(s)	95, 303, 515
AxyI	CCTNAGG	1 cut(s)	153
BbvI	GCAGC	6 cut(s)	199, 298, 301, 304, 387, 390
BccI	CCATC	2 cut(s)	479, 580
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	642
BcoDI	GTCTC	2 cut(s)	248, 464
BfaI	CTAG	1 cut(s)	449
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	6 cut(s)	213, 287, 290, 293, 376, 379
BlsI	GCNGC	6 cut(s)	214, 288, 291, 294, 377, 380
Bme1390I	CCNGG	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	102, 423
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	304, 526
BpuEI	CTTGAG	2 cut(s)	272, 543
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	119, 202, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	12, 505
Bse21I	CCTNAGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	119, 202, 243
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	48, 144
BseNI	ACTGG	2 cut(s)	12, 505
BseRI	GAGGAG	2 cut(s)	255, 421
BseXI	GCAGC	6 cut(s)	199, 298, 301, 304, 387, 390
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	3 cut(s)	44, 204, 245
BshFI	GGCC	3 cut(s)	103, 424, 532
BslFI	GGGAC	2 cut(s)	101, 261
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	2 cut(s)	248, 464
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	2 cut(s)	101, 261
BsnI	GGCC	3 cut(s)	103, 424, 532
Bso31I	GGTCTC	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	493, 642
BspACI	CCGC	7 cut(s)	42, 202, 204, 243, 245, 434, 517
BspANI	GGCC	3 cut(s)	103, 424, 532
BspCNI	CTCAG	2 cut(s)	47, 145
BspFNI	CGCG	3 cut(s)	44, 204, 245
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	12, 505
BssECI	CCNNGG	3 cut(s)	119, 202, 243
BssMI	GATC	2 cut(s)	493, 642
Bst2UI	CCWGG	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	413
BstDEI	CTNAG	2 cut(s)	34, 153
BstDSI	CCRYGG	3 cut(s)	119, 202, 243
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	3 cut(s)	44, 204, 245
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	212, 239
BstKTI	GATC	2 cut(s)	496, 645
BstMAI	GTCTC	2 cut(s)	248, 464
BstMBI	GATC	2 cut(s)	493, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	3 cut(s)	44, 204, 245
BstV1I	GCAGC	6 cut(s)	199, 298, 301, 304, 387, 390
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	103, 424, 532
BtgI	CCRYGG	3 cut(s)	119, 202, 243
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	498, 533
CaiI	CAGNNNCTG	1 cut(s)	320
CfoI	GCGC	2 cut(s)	212, 239
Cfr13I	GGNCC	2 cut(s)	102, 423
Cfr42I	CCGCGG	2 cut(s)	205, 246
CseI	GACGC	2 cut(s)	27, 33
CsiI	ACCWGGT	1 cut(s)	132
CviAII	CATG	4 cut(s)	106, 508, 630, 646
DdeI	CTNAG	2 cut(s)	34, 153
DpnI	GATC	2 cut(s)	495, 644
DpnII	GATC	2 cut(s)	493, 642
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
EciI	GGCGGA	1 cut(s)	532
Eco31I	GGTCTC	1 cut(s)	248
Eco57I	CTGAAG	2 cut(s)	155, 205
Eco81I	CCTNAGG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	4 cut(s)	109, 511, 633, 649
FaiI	YATR	6 cut(s)	54, 107, 458, 509, 631, 647
FaqI	GGGAC	2 cut(s)	101, 261
FatI	CATG	4 cut(s)	105, 507, 629, 645
FauI	CCCGC	2 cut(s)	209, 238
FbaI	TGATCA	1 cut(s)	642
Fnu4HI	GCNGC	6 cut(s)	213, 287, 290, 293, 376, 379
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	6 cut(s)	213, 287, 290, 293, 376, 379
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	2 cut(s)	211, 238
GluI	GCNGC	6 cut(s)	213, 287, 290, 293, 376, 379
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	103, 424, 532
HgaI	GACGC	2 cut(s)	27, 33
HhaI	GCGC	2 cut(s)	212, 239
Hin1II	CATG	4 cut(s)	109, 511, 633, 649
Hin6I	GCGC	2 cut(s)	210, 237
HinP1I	GCGC	2 cut(s)	210, 237
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	4 cut(s)	124, 179, 317, 437
HphI	GGTGA	3 cut(s)	95, 303, 515
Hpy166II	GTNNAC	2 cut(s)	142, 551
Hpy188I	TCNGA	2 cut(s)	337, 598
Hpy188III	TCNNGA	2 cut(s)	299, 449
Hpy8I	GTNNAC	2 cut(s)	142, 551
HpyAV	CCTTC	4 cut(s)	11, 80, 229, 270
HpyCH4IV	ACGT	2 cut(s)	93, 473
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	2 cut(s)	34, 153
HpySE526I	ACGT	2 cut(s)	93, 473
Hsp92II	CATG	4 cut(s)	109, 511, 633, 649
HspAI	GCGC	2 cut(s)	210, 237
Ksp22I	TGATCA	1 cut(s)	642
KspI	CCGCGG	2 cut(s)	205, 246
Kzo9I	GATC	2 cut(s)	493, 642
Lsp1109I	GCAGC	6 cut(s)	199, 298, 301, 304, 387, 390
LweI	GCATC	2 cut(s)	304, 526
MabI	ACCWGGT	1 cut(s)	132
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	2 cut(s)	93, 473
MaeIII	GTNAC	2 cut(s)	3, 503
MalI	GATC	2 cut(s)	495, 644
MboI	GATC	2 cut(s)	493, 642
MboII	GAAGA	4 cut(s)	161, 430, 464, 614
MluCI	AATT	1 cut(s)	569
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	7 cut(s)	14, 148, 276, 399, 414, 436, 604
MroXI	GAANNNNTTC	1 cut(s)	631
MseI	TTAA	2 cut(s)	186, 270
MslI	CAYNNNNRTG	1 cut(s)	634
MspA1I	CMGCKG	3 cut(s)	175, 204, 245
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	3 cut(s)	44, 204, 245
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeII	GATC	2 cut(s)	493, 642
NlaIII	CATG	4 cut(s)	109, 511, 633, 649
NmeAIII	GCCGAG	1 cut(s)	603
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	1 cut(s)	633
PciI	ACATGT	1 cut(s)	629
PdmI	GAANNNNTTC	1 cut(s)	631
PfeI	GAWTC	3 cut(s)	124, 179, 437
PkrI	GCNGC	6 cut(s)	214, 288, 291, 294, 377, 380
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	102, 423
PstNI	CAGNNNCTG	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	634
SacII	CCGCGG	2 cut(s)	205, 246
SaqAI	TTAA	2 cut(s)	186, 270
SatI	GCNGC	6 cut(s)	213, 287, 290, 293, 376, 379
Sau3AI	GATC	2 cut(s)	493, 642
Sau96I	GGNCC	2 cut(s)	102, 423
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	9 cut(s)	96, 138, 177, 283, 367, 391, 416, 476, 615
SexAI	ACCWGGT	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	304, 526
Sfr303I	CCGCGG	2 cut(s)	205, 246
SgrBI	CCGCGG	2 cut(s)	205, 246
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	2 cut(s)	251, 558
SmoI	CTYRAG	2 cut(s)	251, 558
Sse9I	AATT	1 cut(s)	569
SsiI	CCGC	7 cut(s)	42, 202, 204, 243, 245, 434, 517
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	132
TaiI	ACGT	2 cut(s)	96, 476
TasI	AATT	1 cut(s)	569
TfiI	GAWTC	3 cut(s)	124, 179, 437
Tru1I	TTAA	2 cut(s)	186, 270
Tru9I	TTAA	2 cut(s)	186, 270
TscAI	CASTG	2 cut(s)	505, 533
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	6 cut(s)	212, 286, 289, 292, 375, 378
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	615
TspRI	CASTG	2 cut(s)	505, 533
XapI	RAATTY	1 cut(s)	569
XbaI	TCTAGA	1 cut(s)	448
XceI	RCATGY	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	631
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.