Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015932

Physical Location & Seq

Genomic Coordinates Forward (+)

35215982 .. 35218133

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG196100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCAGTGGCATCTTCCTTCCCCTGCATCAAAATCTCAACTTGCTCTTCGTCTCCATCTTGTTCATATTCTTCTTCTTCCTCTAGTAATTCTCTTATGTTGTCTTCTTCTTCAACTAAGCCCTGTTATGTAAAGGCCACCATTAGGAGCTCCCAAACTGAAGGGCCTATAAGAAGACCTGCTGCTCCTTCAGTTAGAGAACCCTCTCCACCTACTCTCAAACCCCCAACACCTCCCTCTAAGTCTCCTTCGCCGCCGCAGCCTCAGCCGGCGGCTCCGGTTTCCGGGCTGACGATGGTGGAGGACAAGAATGTGGTGACGCTTGAGTTTCAGAGGCAGAAGGCTAAGGAGATTCAGGACTACTTCAAGCAGAAGAAGCTTGAGGAAGCCAATCAGGGTCCTTTCTTTGGATTTGTTGGCAAGAATGAGATTAGCAATGGAAGATGGGCGATGTTTGGTTTTGCTGTTGGAATGCTAACAGAGTATGCAACTGGCTCAGACTTTGTTGATCAAGTAAAGATCCTTCTCTCCAATTTTGGGATAGTAGATCTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

185

Amino Acids

19.94

Weight (kDa)

8.9

Isoelectric Point (pI)

67.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34000
fragaria_vesca	FvH4_2g13070
malus_domestica	MD05G1032800.v1.1 MD10G1033800.v1.1
prunus_persica	Prupe.8G039900_v2.0.a1
pyrus_communis	pycom05g02380 pycom10g02230
rosa_chinensis	RchiOBHm_Chr6g0274331
rosa_laevigata	RLG00000013552
rosa_roxburghii	Rroxscaffold_7G00194350
rosa_rugosa	Rorug06G0080900
rosa_samantha	Rh6AG196100 Rh6BG200300 Rh6CG201200
rosa_wichuraiana	Rw6G017140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
AciI	CCGC	3 cut(s)	254, 257, 272
AclWI	GGATC	1 cut(s)	514
AcuI	CTGAAG	2 cut(s)	174, 180
AfiI	CCNNNNNNNGG	4 cut(s)	144, 284, 407, 537
AgsI	TTSAA	2 cut(s)	114, 367
AluBI	AGCT	2 cut(s)	150, 379
AluI	AGCT	2 cut(s)	150, 379
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	2 cut(s)	57, 249
AlwI	GGATC	1 cut(s)	514
AoxI	GGCC	2 cut(s)	135, 164
ApeKI	GCWGC	2 cut(s)	182, 259
AspS9I	GGNCC	2 cut(s)	164, 398
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	152
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
BbsI	GAAGAC	2 cut(s)	96, 181
Bbv12I	GWGCWC	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	169, 271
BccI	CCATC	3 cut(s)	64, 289, 438
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	57, 249
BfaI	CTAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	187
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	5 cut(s)	183, 254, 257, 260, 273
BlsI	GCNGC	5 cut(s)	184, 255, 258, 261, 274
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	164, 398
BmiI	GGNNCC	2 cut(s)	276, 399
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	2 cut(s)	20, 36
BpiI	GAAGAC	2 cut(s)	96, 181
Bpu10I	CCTNAGC	2 cut(s)	264, 345
BpuEI	CTTGAG	2 cut(s)	344, 401
BpuMI	CCSGG	1 cut(s)	286
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 284, 407, 537
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	4 cut(s)	144, 284, 407, 537
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	278, 510
BseNI	ACTGG	1 cut(s)	496
BseXI	GCAGC	2 cut(s)	169, 271
BshFI	GGCC	2 cut(s)	137, 166
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	269, 278, 285
BslI	CCNNNNNNNGG	4 cut(s)	144, 284, 407, 537
BsmAI	GTCTC	2 cut(s)	57, 249
BsmBI	CGTCTC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	137, 166
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	508, 519, 547
BspACI	CCGC	3 cut(s)	254, 257, 272
BspANI	GGCC	2 cut(s)	137, 166
BspCNI	CTCAG	2 cut(s)	277, 509
BspLI	GGNNCC	2 cut(s)	276, 399
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	496
BssAI	RCCGGY	1 cut(s)	268
BssMI	GATC	3 cut(s)	508, 519, 547
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	5 cut(s)	117, 240, 264, 345, 496
BstKTI	GATC	3 cut(s)	511, 522, 550
BstMAI	GTCTC	2 cut(s)	57, 249
BstMBI	GATC	3 cut(s)	508, 519, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	259, 265, 376
BstSCI	CCNGG	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	169, 271
BstV2I	GAAGAC	2 cut(s)	96, 181
BstX2I	RGATCY	2 cut(s)	519, 547
BstYI	RGATCY	2 cut(s)	519, 547
BsuRI	GGCC	2 cut(s)	137, 166
BtgZI	GCGATG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	164, 398
CseI	GACGC	1 cut(s)	328
DdeI	CTNAG	5 cut(s)	117, 240, 264, 345, 496
DpnI	GATC	3 cut(s)	510, 521, 549
DpnII	GATC	3 cut(s)	508, 519, 547
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	150
Eco57I	CTGAAG	2 cut(s)	174, 180
EcoICRI	GAGCTC	1 cut(s)	150
EcoO109I	RGGNCCY	2 cut(s)	164, 398
EcoT38I	GRGCYC	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	57
FaiI	YATR	5 cut(s)	67, 98, 129, 170, 486
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	5 cut(s)	183, 254, 257, 260, 273
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	5 cut(s)	183, 254, 257, 260, 273
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	5 cut(s)	183, 254, 257, 260, 273
HaeIII	GGCC	2 cut(s)	137, 166
HapII	CCGG	3 cut(s)	269, 278, 285
HgaI	GACGC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	3 cut(s)	269, 278, 285
HphI	GGTGA	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	333, 499
Hpy188III	TCNNGA	2 cut(s)	356, 551
HpyAV	CCTTC	6 cut(s)	28, 155, 198, 258, 334, 533
HpyCH4V	TGCA	2 cut(s)	27, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	259, 265, 376
HpyF3I	CTNAG	5 cut(s)	117, 240, 264, 345, 496
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	508, 519, 547
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	4 cut(s)	147, 155, 190, 280
Lsp1109I	GCAGC	2 cut(s)	169, 271
LweI	GCATC	2 cut(s)	20, 36
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	3 cut(s)	510, 521, 549
MboI	GATC	3 cut(s)	508, 519, 547
MflI	RGATCY	2 cut(s)	519, 547
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	2 cut(s)	88, 532
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	8 cut(s)	91, 214, 243, 247, 273, 295, 327, 376
MroNI	GCCGGC	1 cut(s)	268
MspI	CCGG	3 cut(s)	269, 278, 285
MspR9I	CCNGG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	259, 265, 376
NaeI	GCCGGC	1 cut(s)	270
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	3 cut(s)	508, 519, 547
NgoMIV	GCCGGC	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	276, 399
NmuCI	GTSAC	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	52
PctI	GAATGC	1 cut(s)	477
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	5 cut(s)	184, 255, 258, 261, 274
PpuMI	RGGWCCY	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	276, 399
PspPI	GGNCC	2 cut(s)	164, 398
PspPPI	RGGWCCY	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	519, 547
SacI	GAGCTC	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	52
SatI	GCNGC	5 cut(s)	183, 254, 257, 260, 273
Sau3AI	GATC	3 cut(s)	508, 519, 547
Sau96I	GGNCC	2 cut(s)	164, 398
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	5 cut(s)	152, 181, 214, 235, 381
SfaNI	GCATC	2 cut(s)	20, 36
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	323, 380
SmoI	CTYRAG	2 cut(s)	323, 380
Sse9I	AATT	2 cut(s)	88, 532
SsiI	CCGC	3 cut(s)	254, 257, 272
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	284
TasI	AATT	2 cut(s)	88, 532
TauI	GCSGC	3 cut(s)	256, 259, 275
TfiI	GAWTC	1 cut(s)	352
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	182, 259
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	398
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.