FvH4_2g13611

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018375
Physical Location & Seq
Forward (+)
11885664 .. 11891558
5895 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13611.t1

Sequence Viewer

Length: 984 bp
ATGAATTCCAACTTGTTTTCTCGGTGGAATGAGAGGCTAGGTGGGGATAAGGAAGATGAAGAAGATGATGCACAAAGGCGAAGAAATACAACACAAGTTATGGCAGAAGCAACTAGCTGGTTGGCTATTAACTCACTCCAAAAACAACCTCAATGGGATCCAAAACCCGGCTTCGGCGACGAAAGCACCCCCATCGCCCCGTCAACTTCCTCCTCAGTCTTCACGAAAGCAGTTGTCGCCCCCATCCCCGACGACAATGTGGACGACGTGGAGGCTATCATCAGCTGCCGCTTCTTGTCCCCCTTCGCGACTCTCCGATCCTTTTCCAACATCATACGTGGCAGAATCTCCGGGGTCCTCCGCATCATAATCCGATCGCCGAATCTATTGGCTATGCTCCGTCGTCAGACGGCTCAATTTCTCTACACTAGAGTGTTTCTGACAGCTTTAGGAGTATGCTATTATGGCTTTACAAGAACGCCGATATCGAAACACAACTTCGAGGTAACAAGTATAGCAATCAATGATGTCAAACTATTGGCTAGGTCTGATACAGACACCTTAACCGAGTCCGTCGTTGTCTGCACCAAACTAGCTTTGGAGATCGGTATATCGGTTTTGGAGCCGTTTACAGCCTATGTTGTACAAGAGGTTGGTGTGGCTTCGATTATTCTGGTGTTAAGCTTAATTGAGATTGTGATGAGTTGCAGGAAGCAACCTTGGTGGGTTAATGATAGATTTAGATGGAGGAGGGTTAGTTGGGTTCTTGGTGTTTATGAGGTGCTTATTGCTATCATGGAAATTGTTCTATATGCACTGGCTTTCCAAACTCACTGGAGTCTGCACATTGCACTGTTTGCATGGGTCTATGGATTCTATTCAATTTGTGAGAAGCTTGTGAAGAAATTGACAAGGAAAGAGAGGCTTTATGAGACTGTTTTGTTCGAAGAATTAAGAATCCGTGCAAGAGGAGGATTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

328

Amino Acids

37.34

Weight (kDa)

8.55

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018375)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13611
rosa_chinensis RchiOBHm_Chr3g0485191 RchiOBHm_Chr6g0254781 RchiOBHm_Chr7g0210011
rosa_laevigata RLG00000008141
rosa_samantha Rh1CG139600 Rh2AG532000 Rh2CG237700 Rh2CG444900 Rh5AG535900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 308
AciI CCGC 2 cut(s) 289, 361
AclWI GGATC 3 cut(s) 152, 165, 312
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 645
AfiI CCNNNNNNNGG 2 cut(s) 167, 173
AgsI TTSAA 1 cut(s) 882
AjiI CACGTC 1 cut(s) 268
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 6 cut(s) 117, 285, 446, 596, 684, 895
AluI AGCT 6 cut(s) 117, 285, 446, 596, 684, 895
Alw26I GTCTC 1 cut(s) 926
AlwI GGATC 3 cut(s) 152, 165, 312
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 804
AspS9I GGNCC 1 cut(s) 355
AsuC2I CCSGG 2 cut(s) 168, 352
AsuII TTCGAA 1 cut(s) 945
AvaII GGWCC 1 cut(s) 355
BamHI GGATCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 272
BccI CCATC 3 cut(s) 200, 251, 738
BceAI ACGGC 2 cut(s) 426, 610
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BcnI CCSGG 2 cut(s) 168, 352
BcoDI GTCTC 1 cut(s) 926
BfaI CTAG 5 cut(s) 38, 114, 429, 543, 593
BisI GCNGC 2 cut(s) 286, 289
BlsI GCNGC 2 cut(s) 287, 290
Bme1390I CCNGG 2 cut(s) 168, 352
Bme18I GGWCC 1 cut(s) 355
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 3 cut(s) 159, 356, 624
BmrFI CCNGG 2 cut(s) 168, 352
BmsI GCATC 2 cut(s) 58, 372
BpiI GAAGAC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 856
Bpu14I TTCGAA 1 cut(s) 945
BpuMI CCSGG 2 cut(s) 168, 352
BsaAI YACGTR 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 351, 719
BsaXI ACNNNNNCTCC 2 cut(s) 742, 772
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 173
Bse1I ACTGG 2 cut(s) 822, 839
Bse3DI GCAATG 1 cut(s) 846
BseDI CCNNGG 2 cut(s) 351, 719
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 167, 173
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 2 cut(s) 822, 839
BseRI GAGGAG 3 cut(s) 202, 763, 984
BseXI GCAGC 1 cut(s) 272
BsgI GTGCAG 2 cut(s) 568, 827
Bsh1236I CGCG 1 cut(s) 308
Bsh1285I CGRYCG 1 cut(s) 377
BsiEI CGRYCG 1 cut(s) 377
BsiSI CCGG 2 cut(s) 168, 351
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 2 cut(s) 167, 173
BsmAI GTCTC 1 cut(s) 926
BsmFI GGGAC 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 945
Bsp1407I TGTACA 1 cut(s) 643
Bsp143I GATC 4 cut(s) 157, 317, 374, 603
Bsp68I TCGCGA 1 cut(s) 308
BspACI CCGC 2 cut(s) 289, 361
BspCNI CTCAG 1 cut(s) 227
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 3 cut(s) 159, 356, 624
BspPI GGATC 3 cut(s) 152, 165, 312
BspT104I TTCGAA 1 cut(s) 945
BsrDI GCAATG 1 cut(s) 846
BsrGI TGTACA 1 cut(s) 643
BsrI ACTGG 2 cut(s) 822, 839
BssECI CCNNGG 2 cut(s) 351, 719
BssMI GATC 4 cut(s) 157, 317, 374, 603
BssT1I CCWWGG 1 cut(s) 719
Bst4CI ACNGT 2 cut(s) 855, 937
BstAPI GCANNNNNTGC 1 cut(s) 857
BstAUI TGTACA 1 cut(s) 643
BstBAI YACGTR 1 cut(s) 338
BstBI TTCGAA 1 cut(s) 945
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 4 cut(s) 160, 320, 377, 606
BstMAI GTCTC 1 cut(s) 926
BstMBI GATC 4 cut(s) 157, 317, 374, 603
BstMCI CGRYCG 1 cut(s) 377
BstMWI GCNNNNNNNGC 4 cut(s) 183, 236, 465, 857
BstSCI CCNGG 2 cut(s) 166, 350
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 178
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 815, 832, 851
BtuMI TCGCGA 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 355
Csp6I GTAC 1 cut(s) 644
CspCI CAANNNNNGTGG 2 cut(s) 704, 739
CviAII CATG 2 cut(s) 796, 861
CviQI GTAC 1 cut(s) 644
DdeI CTNAG 1 cut(s) 214
DpnI GATC 4 cut(s) 159, 319, 376, 605
DpnII GATC 4 cut(s) 157, 317, 374, 603
Eco130I CCWWGG 1 cut(s) 719
Eco32I GATATC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 719
ErhI CCWWGG 1 cut(s) 719
FaeI CATG 2 cut(s) 799, 864
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FaqI GGGAC 1 cut(s) 283
FatI CATG 2 cut(s) 795, 860
Fnu4HI GCNGC 2 cut(s) 286, 289
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 2 cut(s) 286, 289
FspBI CTAG 5 cut(s) 38, 114, 429, 543, 593
GluI GCNGC 2 cut(s) 286, 289
GsuI CTGGAG 1 cut(s) 856
HapII CCGG 2 cut(s) 168, 351
Hin1II CATG 2 cut(s) 799, 864
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 2 cut(s) 682, 893
HinfI GANTC 8 cut(s) 310, 345, 382, 569, 838, 873, 957, 975
HpaII CCGG 2 cut(s) 168, 351
Hpy166II GTNNAC 3 cut(s) 204, 262, 630
Hpy188I TCNGA 5 cut(s) 317, 374, 408, 441, 550
Hpy188III TCNNGA 2 cut(s) 223, 307
Hpy8I GTNNAC 3 cut(s) 204, 262, 630
Hpy99I CGWCG 5 cut(s) 182, 254, 269, 405, 578
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 2 cut(s) 855, 937
HpyCH4IV ACGT 2 cut(s) 267, 337
HpyCH4V TGCA 8 cut(s) 71, 585, 708, 815, 844, 851, 860, 965
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 236, 465, 857
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 2 cut(s) 267, 337
Hsp92II CATG 2 cut(s) 799, 864
Kzo9I GATC 4 cut(s) 157, 317, 374, 603
LmnI GCTCC 2 cut(s) 402, 622
LpnPI CCDG 7 cut(s) 103, 181, 364, 659, 694, 803, 820
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 2 cut(s) 58, 372
MaeI CTAG 5 cut(s) 38, 114, 429, 543, 593
MaeII ACGT 2 cut(s) 267, 337
MaeIII GTNAC 1 cut(s) 505
MalI GATC 4 cut(s) 159, 319, 376, 605
MboI GATC 4 cut(s) 157, 317, 374, 603
MboII GAAGA 7 cut(s) 65, 71, 74, 93, 211, 913, 959
MflI RGATCY 1 cut(s) 157
MluCI AATT 7 cut(s) 4, 416, 687, 801, 882, 905, 950
MlyI GAGTC 3 cut(s) 304, 578, 847
MmeI TCCRAC 2 cut(s) 33, 351
MroXI GAANNNNTTC 1 cut(s) 804
MseI TTAA 6 cut(s) 129, 563, 680, 686, 729, 953
MslI CAYNNNNRTG 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 2 cut(s) 168, 351
MspR9I CCNGG 2 cut(s) 168, 352
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 4 cut(s) 183, 236, 465, 857
NciI CCSGG 2 cut(s) 168, 352
NdeII GATC 4 cut(s) 157, 317, 374, 603
NlaIII CATG 2 cut(s) 799, 864
NlaIV GGNNCC 3 cut(s) 159, 356, 624
NruI TCGCGA 1 cut(s) 308
NspV TTCGAA 1 cut(s) 945
OliI CACNNNNGTG 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 804
PfeI GAWTC 5 cut(s) 345, 382, 873, 957, 975
PkrI GCNGC 2 cut(s) 287, 290
Ple19I CGATCG 1 cut(s) 377
PleI GAGTC 3 cut(s) 304, 577, 846
PpsI GAGTC 3 cut(s) 304, 577, 846
Ppu21I YACGTR 1 cut(s) 338
PpuMI RGGWCCY 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 355
PspN4I GGNNCC 3 cut(s) 159, 356, 624
PspPI GGNCC 1 cut(s) 355
PspPPI RGGWCCY 1 cut(s) 355
PsuI RGATCY 1 cut(s) 157
PvuI CGATCG 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 285
RruI TCGCGA 1 cut(s) 308
RsaI GTAC 1 cut(s) 645
RsaNI GTAC 1 cut(s) 644
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 6 cut(s) 129, 563, 680, 686, 729, 953
SatI GCNGC 2 cut(s) 286, 289
Sau3AI GATC 4 cut(s) 157, 317, 374, 603
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 3 cut(s) 304, 578, 847
ScrFI CCNGG 2 cut(s) 168, 352
SfaNI GCATC 2 cut(s) 58, 372
SfuI TTCGAA 1 cut(s) 945
SinI GGWCC 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 431
Sse9I AATT 7 cut(s) 4, 416, 687, 801, 882, 905, 950
SsiI CCGC 2 cut(s) 289, 361
SspMI CTAG 5 cut(s) 38, 114, 429, 543, 593
StyD4I CCNGG 2 cut(s) 166, 350
StyI CCWWGG 1 cut(s) 719
TaaI ACNGT 2 cut(s) 855, 937
TaiI ACGT 2 cut(s) 270, 340
TaqI TCGA 5 cut(s) 488, 501, 665, 945, 978
TasI AATT 7 cut(s) 4, 416, 687, 801, 882, 905, 950
TatI WGTACW 1 cut(s) 643
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 5 cut(s) 345, 382, 873, 957, 975
Tru1I TTAA 6 cut(s) 129, 563, 680, 686, 729, 953
Tru9I TTAA 6 cut(s) 129, 563, 680, 686, 729, 953
TscAI CASTG 3 cut(s) 822, 839, 858
TseI GCWGC 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 17, 72
TspGWI ACGGA 3 cut(s) 389, 562, 950
TspRI CASTG 3 cut(s) 822, 839, 858
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 1 cut(s) 4
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XmnI GAANNNNTTC 1 cut(s) 804
XspI CTAG 5 cut(s) 38, 114, 429, 543, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.