Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018375

Physical Location & Seq

Genomic Coordinates Forward (+)

24582148 .. 24583563

Gene Structure 1416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG237700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTCCTTCTCCCCCAAATCGATTCAGCCTTATCTGAGGTCAGGGAATTTCGACAAGGCATGGAGAAATTTGTTTAAATCGCGGTGGCCGGAGCTTGGCAGTAGGATTGAACCTCCTGACTGGCAGCAGATATATTGGGAAACGCATCTGCAAAATTGTCTAGATGAAGTAGCAGAGCTAGCTTCGCTGCCCTCATTTGATGGGCGCCTTGGTGAAATCAAGATTTCAGACTCTTTATTGGAATTGATAGGTTGTGAGGGTGACATGGCTACTTCAACTTGTGAATATTCCAAACTATATCACCATTGTCTACACTGTGGTTACTTTGTGCAATGCCTGAGACTTCAAAATGCTTTCTGTGATGAAGAAATTTGTGTAAGTTACTCTATTCATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

132

Amino Acids

15.29

Weight (kDa)

5.1

Isoelectric Point (pI)

57.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018375)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13611
rosa_chinensis	RchiOBHm_Chr3g0485191 RchiOBHm_Chr6g0254781 RchiOBHm_Chr7g0210011
rosa_laevigata	RLG00000008141
rosa_samantha	Rh1CG139600 Rh2AG532000 Rh2CG237700 Rh2CG444900 Rh5AG535900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	310
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	3 cut(s)	46, 67, 369
AcyI	GRCGYC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	110, 276, 347
AluBI	AGCT	3 cut(s)	94, 178, 182
AluI	AGCT	3 cut(s)	94, 178, 182
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	124, 187
ApoI	RAATTY	3 cut(s)	46, 67, 369
AspLEI	GCGC	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	224, 272, 293
AsuNHI	GCTAGC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	136, 174
BccI	CCATC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	2 cut(s)	161, 179
BfoI	RGCGCY	1 cut(s)	208
BisI	GCNGC	2 cut(s)	125, 188
BlsI	GCNGC	2 cut(s)	126, 189
BmiI	GGNNCC	1 cut(s)	206
BmsI	GCATC	1 cut(s)	154
BmtI	GCTAGC	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	338
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	2 cut(s)	26, 329
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	136, 174
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	204
BshVI	ATCGAT	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	2 cut(s)	27, 330
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	206
BspOI	GCTAGC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	317
BstACI	GRCGYC	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	35, 338
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 184
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	136, 174
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	88
BsuTUI	ATCGAT	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	20
CviAII	CATG	3 cut(s)	60, 265, 392
CviJI	RGCY	6 cut(s)	28, 88, 94, 178, 182, 269
CviKI_1	RGCY	6 cut(s)	28, 88, 94, 178, 182, 269
DdeI	CTNAG	2 cut(s)	35, 338
DinI	GGCGCC	1 cut(s)	206
DraI	TTTAAA	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	208
EgeI	GGCGCC	1 cut(s)	206
EheI	GGCGCC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	3 cut(s)	63, 268, 395
FaiI	YATR	6 cut(s)	61, 133, 266, 298, 393, 397
FatI	CATG	3 cut(s)	59, 264, 391
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	125, 188
Fsp4HI	GCNGC	2 cut(s)	125, 188
FspBI	CTAG	2 cut(s)	161, 179
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	2 cut(s)	125, 188
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	88
HapII	CCGG	1 cut(s)	89
HhaI	GCGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	3 cut(s)	63, 268, 395
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	22, 230
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	3 cut(s)	224, 272, 293
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	2 cut(s)	36, 229
Hpy188III	TCNNGA	3 cut(s)	116, 161, 220
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	151, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 184
HpyF3I	CTNAG	2 cut(s)	35, 338
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	63, 268, 395
HspAI	GCGC	1 cut(s)	205
KasI	GGCGCC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	5 cut(s)	27, 102, 106, 129, 350
Lsp1109I	GCAGC	2 cut(s)	136, 174
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	161, 179
MaeIII	GTNAC	3 cut(s)	260, 320, 380
MboII	GAAGA	1 cut(s)	377
MluCI	AATT	5 cut(s)	46, 67, 154, 242, 369
Mly113I	GGCGCC	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	4 cut(s)	30, 123, 202, 250
MseI	TTAA	1 cut(s)	75
MspI	CCGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	179, 184
NarI	GGCGCC	1 cut(s)	205
NheI	GCTAGC	1 cut(s)	178
NlaIII	CATG	3 cut(s)	63, 268, 395
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	126, 189
PleI	GAGTC	1 cut(s)	224
PluTI	GGCGCC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	125, 188
SchI	GAGTC	1 cut(s)	224
SetI	ASST	6 cut(s)	41, 96, 115, 180, 184, 253
SfaNI	GCATC	1 cut(s)	154
SfoI	GGCGCC	1 cut(s)	206
Sse9I	AATT	5 cut(s)	46, 67, 154, 242, 369
SsiI	CCGC	1 cut(s)	82
SspDI	GGCGCC	1 cut(s)	204
SspI	AATATT	1 cut(s)	287
SspMI	CTAG	2 cut(s)	161, 179
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	20, 51
TasI	AATT	5 cut(s)	46, 67, 154, 242, 369
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	2 cut(s)	124, 187
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	180, 378, 380
TspRI	CASTG	1 cut(s)	320
XapI	RAATTY	3 cut(s)	46, 67, 369
XbaI	TCTAGA	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	2 cut(s)	161, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.