RLG00000008141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018375
Physical Location & Seq
Reverse (-)
26196015 .. 26204609
8595 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008141

Sequence Viewer

Length: 1329 bp
ATGGATAAGGCGGCGGTGGACTCTCTTCCAGCTCCGCAAAATAACCCACTTCTCCACTACCACTCCTATTTCCACAACTCCTTATCACTCCGATTCCGACCCACAACCCGCTTCTGGCTCTACCAACCCTGCGTTGTCGACTCCTCCGGCGACGTAAACCCCCGAGAAAAGCTCTCCATCTCAAAACCCGTCTCCAGCGACGAAATCACCCCCATCGCCCCGTCAACTTCATCCTCAGTCTTCACGGAAGCCGTCGCCCCCATCCCTGATGATGACGTGGACGACGTCGATGCTATCACCAGCCGACGCTTCTTGTCCCCCAAACCCTTCGCGAGTCTCCGCCTCGCTATCTCCGTTACTATTTCTTCGTCGTCAAGCTCCTCTGACTTCCCATACGTCGTCGTCGTGTTGAGCACCGTCGTGAGAGTCCACCACCGCCTTATCCATTCTCACCATTTGGGGAAGAATTTGCAGGAGGAGGACGGTGAGGAATTTGATGAGGAATTGGAGGAGTCTGATGATGATGAAGTGGCGGAAAATGAAGAAGAAGAAGATGAAGATGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAAATGTAGAAGAAGAAGAAGGTGGAGGCAAGAACGAAATCGAGGATGGTTTCTTTAATATAAAGGCTACGGAAGCAGAGGAATATGAGAATGACAAGGAGGATGAAGGGGATGAAGAAGAAGATGGTGAAGATGAGGAGGAAGAGGATGATGCCCAGGAGCTCATGAATGTAGGGGAAGGTGAGGACGACGGGGATGGCATGGATGCAAGGGACGGAATTTCGACAAGGCATGGAGAAATTTGTTTAAATCGCGGTGGCCGGAGCTTGGCAGTAGGATTGAACCACCTGACTGGCAGCAGATATATTGGGAAATGCATCTGCAAAATTCAAGCTTCTGTAGGAGACTCTTTATTGGAATTGATAGGTTGTGAGGGTGACATGGCTACTTCAACTTGTGAATATTCCAAACTATATCACCATCTTCTACACTTTGGTTACTTTTTGCAATGCCTGAGACTTCAAAATGTTTTCTGTGATGAATTAATTTGTCACCTATTGAGGAACAGCAAATTGCAGAGCTTGGAACTAAGGTGGATAAGATCCAAGGAGCATATTACTGGATTATGCAAGCTTCTCAACCAGAACAGTGAAAGTTTAACGTCGCTTGAATTCATTTACTGTACACTTTCTTCAGCTTCTATCACAGCAATTTGTAGTTCTCTATCCCCAACAATTTGGTCTTGGAAGGAGGGAAATATTTCAGCTAACGAGAAATTCGTGCAAGTTTATATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

443

Amino Acids

49.54

Weight (kDa)

4.31

Isoelectric Point (pI)

64.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018375)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13611
rosa_chinensis RchiOBHm_Chr3g0485191 RchiOBHm_Chr6g0254781 RchiOBHm_Chr7g0210011
rosa_laevigata RLG00000008141
rosa_samantha Rh1CG139600 Rh2AG532000 Rh2CG237700 Rh2CG444900 Rh5AG535900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
AccI GTMKAC 1 cut(s) 138
AccII CGCG 2 cut(s) 332, 843
AciI CCGC 8 cut(s) 11, 14, 35, 109, 340, 436, 533, 843
AclWI GGATC 1 cut(s) 1125
AcoI YGGCCR 1 cut(s) 847
AcsI RAATTY 7 cut(s) 466, 491, 807, 828, 915, 1199, 1304
AcuI CTGAAG 1 cut(s) 1206
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 1 cut(s) 1213
AfiI CCNNNNNNNGG 2 cut(s) 114, 856
AgsI TTSAA 5 cut(s) 871, 920, 981, 1052, 1199
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 744
AleI CACNNNNGTG 1 cut(s) 419
Alw21I GWGCWC 2 cut(s) 416, 753
Alw26I GTCTC 4 cut(s) 196, 341, 927, 1039
AlwI GGATC 1 cut(s) 1125
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 1 cut(s) 847
ApeKI GCWGC 1 cut(s) 885
ApoI RAATTY 7 cut(s) 466, 491, 807, 828, 915, 1199, 1304
AseI ATTAAT 1 cut(s) 1073
Asp700I GAANNNNTTC 1 cut(s) 1288
AsuHPI GGTGA 9 cut(s) 199, 289, 443, 497, 728, 782, 977, 998, 1073
AvaI CYCGRG 1 cut(s) 162
BanII GRGCYC 1 cut(s) 753
BarI GAAGNNNNNNTAC 2 cut(s) 1204, 1236
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 2 cut(s) 416, 753
BbvI GCAGC 1 cut(s) 897
BccI CCATC 7 cut(s) 185, 221, 269, 629, 707, 779, 1017
BceAI ACGGC 1 cut(s) 236
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BciT130I CCWGG 1 cut(s) 746
BcoDI GTCTC 4 cut(s) 196, 341, 927, 1039
BfmI CTRYAG 1 cut(s) 927
BisI GCNGC 2 cut(s) 12, 886
BlsI GCNGC 2 cut(s) 13, 887
Bme1390I CCNGG 1 cut(s) 746
BmeT110I CYCGRG 1 cut(s) 162
BmgBI CACGTC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 746
BmsI GCATC 4 cut(s) 280, 730, 784, 915
BpiI GAAGAC 1 cut(s) 232
BplI GAGNNNNNCTC 2 cut(s) 156, 188
BpmI CTGGAG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 744, 1134
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 856
Bse1I ACTGG 2 cut(s) 886, 1153
Bse3DI GCAATG 1 cut(s) 1043
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 2 cut(s) 744, 1134
BseGI GGATG 8 cut(s) 230, 261, 640, 697, 706, 742, 790, 799
BseLI CCNNNNNNNGG 2 cut(s) 114, 856
BseMI GCAATG 1 cut(s) 1043
BseMII CTCAG 2 cut(s) 249, 1034
BseNI ACTGG 2 cut(s) 886, 1153
BseXI GCAGC 1 cut(s) 897
Bsh1236I CGCG 2 cut(s) 332, 843
BshFI GGCC 1 cut(s) 849
BsiHKAI GWGCWC 2 cut(s) 416, 753
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 147, 850
BslFI GGGAC 2 cut(s) 301, 815
BslI CCNNNNNNNGG 2 cut(s) 114, 856
BsmAI GTCTC 4 cut(s) 196, 341, 927, 1039
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 301, 815
BsnI GGCC 1 cut(s) 849
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 416, 753
Bsp1407I TGTACA 1 cut(s) 1211
Bsp143I GATC 1 cut(s) 1130
Bsp68I TCGCGA 1 cut(s) 332
BspACI CCGC 8 cut(s) 11, 14, 35, 109, 340, 436, 533, 843
BspANI GGCC 1 cut(s) 849
BspCNI CTCAG 2 cut(s) 248, 1035
BspFNI CGCG 2 cut(s) 332, 843
BspHI TCATGA 1 cut(s) 753
BspPI GGATC 1 cut(s) 1125
BsrDI GCAATG 1 cut(s) 1043
BsrGI TGTACA 1 cut(s) 1211
BsrI ACTGG 2 cut(s) 886, 1153
BssECI CCNNGG 2 cut(s) 744, 1134
BssMI GATC 1 cut(s) 1130
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 1134
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 4 cut(s) 418, 485, 1178, 1211
Bst6I CTCTTC 2 cut(s) 30, 726
BstACI GRCGYC 1 cut(s) 285
BstAUI TGTACA 1 cut(s) 1211
BstC8I GCNNGC 1 cut(s) 1160
BstDEI CTNAG 3 cut(s) 235, 1043, 1118
BstF5I GGATG 8 cut(s) 230, 261, 640, 697, 706, 742, 790, 799
BstFNI CGCG 2 cut(s) 332, 843
BstKTI GATC 1 cut(s) 1133
BstMAI GTCTC 4 cut(s) 196, 341, 927, 1039
BstMBI GATC 1 cut(s) 1130
BstMWI GCNNNNNNNGC 1 cut(s) 662
BstNI CCWGG 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 744
BstSFI CTRYAG 1 cut(s) 927
BstUI CGCG 2 cut(s) 332, 843
BstV1I GCAGC 1 cut(s) 897
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 1130
BstXI CCANNNNNNTGG 2 cut(s) 881, 1266
BstYI RGATCY 1 cut(s) 1130
BsuRI GGCC 1 cut(s) 849
BtgZI GCGATG 1 cut(s) 199
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 8 cut(s) 230, 261, 640, 697, 706, 742, 790, 799
BtsIMutI CAGTG 1 cut(s) 1183
BtuMI TCGCGA 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 1160
CciI TCATGA 1 cut(s) 753
CseI GACGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 1212
CviAII CATG 4 cut(s) 754, 790, 821, 970
CviQI GTAC 1 cut(s) 1212
DdeI CTNAG 3 cut(s) 235, 1043, 1118
DpnI GATC 1 cut(s) 1132
DpnII GATC 1 cut(s) 1130
DraI TTTAAA 1 cut(s) 837
EaeI YGGCCR 1 cut(s) 847
Eam1104I CTCTTC 2 cut(s) 30, 726
EarI CTCTTC 2 cut(s) 30, 726
EciI GGCGGA 2 cut(s) 329, 548
Ecl136II GAGCTC 1 cut(s) 751
Eco130I CCWWGG 1 cut(s) 1134
Eco24I GRGCYC 1 cut(s) 753
Eco53kI GAGCTC 1 cut(s) 751
Eco57I CTGAAG 1 cut(s) 1206
Eco88I CYCGRG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 1199
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 1 cut(s) 1134
EcoT22I ATGCAT 1 cut(s) 908
EcoT38I GRGCYC 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 1134
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 4 cut(s) 757, 793, 824, 973
FaqI GGGAC 2 cut(s) 301, 815
FatI CATG 4 cut(s) 753, 789, 820, 969
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 12, 886
FokI GGATG 8 cut(s) 217, 248, 647, 704, 713, 749, 797, 806
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 2 cut(s) 12, 886
GluI GCNGC 2 cut(s) 12, 886
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 1 cut(s) 849
HapII CCGG 2 cut(s) 147, 850
HgaI GACGC 1 cut(s) 315
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 4 cut(s) 757, 793, 824, 973
HincII GTYRAC 2 cut(s) 139, 225
HindII GTYRAC 2 cut(s) 139, 225
HindIII AAGCTT 2 cut(s) 921, 1160
HinfI GANTC 7 cut(s) 20, 93, 140, 334, 426, 512, 935
HpaII CCGG 2 cut(s) 147, 850
HphI GGTGA 9 cut(s) 199, 289, 443, 497, 728, 782, 977, 998, 1073
Hpy166II GTNNAC 7 cut(s) 19, 139, 157, 225, 280, 430, 1214
Hpy188I TCNGA 4 cut(s) 92, 98, 385, 517
Hpy188III TCNNGA 3 cut(s) 331, 421, 754
Hpy8I GTNNAC 7 cut(s) 19, 139, 157, 225, 280, 430, 1214
HpyAV CCTTC 5 cut(s) 337, 602, 689, 761, 1270
HpyCH4III ACNGT 4 cut(s) 418, 485, 1178, 1211
HpyCH4IV ACGT 5 cut(s) 153, 276, 285, 396, 1190
HpyCH4V TGCA 8 cut(s) 472, 797, 906, 912, 1036, 1105, 1158, 1312
HpyF10VI GCNNNNNNNGC 1 cut(s) 662
HpyF3I CTNAG 3 cut(s) 235, 1043, 1118
HpySE526I ACGT 5 cut(s) 153, 276, 285, 396, 1190
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 4 cut(s) 757, 793, 824, 973
Kzo9I GATC 1 cut(s) 1130
LmnI GCTCC 5 cut(s) 37, 383, 748, 852, 1138
Lsp1109I GCAGC 1 cut(s) 897
LweI GCATC 4 cut(s) 280, 730, 784, 915
MaeII ACGT 5 cut(s) 153, 276, 285, 396, 1190
MaeIII GTNAC 4 cut(s) 355, 965, 1025, 1079
MalI GATC 1 cut(s) 1132
MboI GATC 1 cut(s) 1130
MflI RGATCY 1 cut(s) 1130
MhlI GDGCHC 2 cut(s) 416, 753
MlyI GAGTC 6 cut(s) 14, 134, 343, 435, 521, 929
MmeI TCCRAC 1 cut(s) 121
Mph1103I ATGCAT 1 cut(s) 908
MroXI GAANNNNTTC 1 cut(s) 1288
MseI TTAA 4 cut(s) 645, 836, 1073, 1187
MslI CAYNNNNRTG 1 cut(s) 419
MspI CCGG 2 cut(s) 147, 850
MspR9I CCNGG 1 cut(s) 746
MvaI CCWGG 1 cut(s) 746
MvnI CGCG 2 cut(s) 332, 843
MwoI GCNNNNNNNGC 1 cut(s) 662
NdeII GATC 1 cut(s) 1130
NlaIII CATG 4 cut(s) 757, 793, 824, 973
NmuCI GTSAC 2 cut(s) 965, 1079
NruI TCGCGA 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 908
OliI CACNNNNGTG 1 cut(s) 419
PagI TCATGA 1 cut(s) 753
PcsI WCGNNNNNNNCGW 4 cut(s) 282, 351, 402, 1305
PdmI GAANNNNTTC 1 cut(s) 1288
PfeI GAWTC 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 2 cut(s) 13, 887
PleI GAGTC 6 cut(s) 14, 134, 342, 434, 520, 929
PpsI GAGTC 6 cut(s) 14, 134, 342, 434, 520, 929
PshBI ATTAAT 1 cut(s) 1073
Psp124BI GAGCTC 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PsuI RGATCY 1 cut(s) 1130
PsyI GACNNNGTC 1 cut(s) 284
RruI TCGCGA 1 cut(s) 332
RsaI GTAC 1 cut(s) 1213
RsaNI GTAC 1 cut(s) 1212
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 753
SalI GTCGAC 1 cut(s) 137
SaqAI TTAA 4 cut(s) 645, 836, 1073, 1187
SatI GCNGC 2 cut(s) 12, 886
Sau3AI GATC 1 cut(s) 1130
SchI GAGTC 6 cut(s) 14, 134, 343, 435, 521, 929
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 2 cut(s) 416, 753
SfaNI GCATC 4 cut(s) 280, 730, 784, 915
SfcI CTRYAG 1 cut(s) 927
SmiMI CAYNNNNRTG 1 cut(s) 419
SsiI CCGC 8 cut(s) 11, 14, 35, 109, 340, 436, 533, 843
SspI AATATT 2 cut(s) 992, 1288
SstI GAGCTC 1 cut(s) 753
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 1 cut(s) 1134
TaaI ACNGT 4 cut(s) 418, 485, 1178, 1211
TaiI ACGT 5 cut(s) 156, 279, 288, 399, 1193
TaqI TCGA 4 cut(s) 138, 288, 630, 812
TatI WGTACW 1 cut(s) 1211
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 4 cut(s) 645, 836, 1073, 1187
Tru9I TTAA 4 cut(s) 645, 836, 1073, 1187
TscAI CASTG 1 cut(s) 1183
TseFI GTSAC 2 cut(s) 965, 1079
TseI GCWGC 1 cut(s) 885
Tsp45I GTSAC 2 cut(s) 965, 1079
TspDTI ATGAA 9 cut(s) 219, 540, 555, 570, 708, 717, 770, 1083, 1192
TspGWI ACGGA 4 cut(s) 260, 343, 674, 819
TspRI CASTG 1 cut(s) 1183
Tth111I GACNNNGTC 1 cut(s) 284
VspI ATTAAT 1 cut(s) 1073
XapI RAATTY 7 cut(s) 466, 491, 807, 828, 915, 1199, 1304
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 1288
ZraI GACGTC 1 cut(s) 286
Zsp2I ATGCAT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.