FvH4_2g19792

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0020125
Physical Location & Seq
Reverse (-)
16738348 .. 16740480
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19792.t1

Sequence Viewer

Length: 2133 bp
ATGGCCAAAAACAAAGGAGTAGGGCCTGCTCAGTCCACTGCTGGTTCTCAAGGTGGTGATGTTTCATCCCTTGAAAACGAACTACAGAGTCACAAAGAGCACACTGCTGCTCAGATTAGTGACCTCCAAACCACTCTCAATGTGTACCAAGAGTCTATTAATGCATTTCGCCTGGAGATGATGGCAGAGTTCCGAGCTCTGAAGGAGGCATCTGCTGCTCGAGTAGATCCAGTGAGTTCTACACCTCTCAAGTTCGGATCTGTTCCTCCAGAGGTCGGATCTGTAGCGTTGGAGGGTTTTGCCGACTCTGCTACATCCACTCGAGCGATGGTAAGCTCAACTACAAGTTCACAAAGAGGGAATGGTTCTCAACCTCTAGCTTTGGCTGCACCTAATTTTGCTGAAAGTGAGTCACTTTTACAATTCCATACTAGTCAGCCTATCATTACAAATGCTTCTGGAGTGGTCATGAACACTCTCACGGTGACTAAGGTGTCGGAACCTACACCCAAGTTGGATAAAGGGAAGAGTGTCAGTCTGGTGAAAGGTCAAGCAAGTGGAACCAAGTCTCAAGGATGTGGTTTTACTAAATACCAGCCTAATCAATTTTTTCAGCACTCAAAATTTGGTTCTCAACCACTTTCACAAACTCAGTTTCAGTACAGCTCCATACCACCCTTTGGTGCACAACGGGATTTTGTTCATGCGCAAATGGCCATGCCAAATTTTGCACATAACTTTTTTGCCCCAGGTTATACACAGCCATATACTCCAAACACATTCACTTCTCATACACAGCCAATGCCTATGAACTTTGGGCATCCACACTTTCAGCAAATACCACACCCAGTGTATACACCAGCTTCTAATGCAACGCATATACCACAATTTCCTAACTCATTTGGCAACCAGATAAACCACCAGTTCACACCATACATGCCACAACAACTCCAACATACCCCTTATGACCCTAATTTGCCAACCATGAAGCAAATGAAGCTTGAATTCAGTTTGTTTGGGGGAGGGGATCCGGTTGAATGGTTGAACAAGGCAGAGCAGTTCTTTGAGTTTTATCAAATTCCAGAAGAAAGGAAGTTAGCATTGGCAAGCATGCATCTGATTGAGAAAGCCTCTGACAGATGGTCTATGTTCAAACATGAGTTCCCTCATTCGTGGGCTGGTCTGACAGAGTTGTTGATGAGGGAGTTTGGTGGACATCGCAAAGTTGATCATCAGGCAGCTCTGGCTCGAATGAATCAAGTTGGTTCAGTGGAGCATTACATGGAGGAGTTCACAAAGTTGGCAAGGAGAGCCCCTGTTTTTTCCCCTCAGACTTTGTTATCCTTTTTTGTTGGAGGGTTGAAAGAGTCTATACGCTCAGATGTTAGAGCCTTAAAGCCAAAAACATTATATGAAGCATGTGAATTAGCTAAGATATATGAAGAGAAGGAGATTAATATCAGGGCACAACACCGAACTCAGTTGCAACCTAGAGCTCTGATACCACCGTCGAGACCTACTTATAACAACAACAATGGGACTCATCAAAGGGCCCTTCAACCAGCTCGAGTGCCTGCACCACAAGGGGTCAATGCAGGAGGAAACAGCAGAAGACTTACACAAGCCGAGTATCAGGAAAGACGAGCTCGAAATCAGTGTTTCTTTTGCGATGAGCTTTTCCGACTAGGACACAACTGTAGGAGGGGTCAAGCACTGATGGTGATTGAAGTAGTGCAAGAGGAAGTGGAGTTACAAGGGCCTGAAAATGAAGAGGAGGTGGACAACGACAGAGCGGAGTTAAATGTTGTGCAAGAGGTTGAATTACAACTCCATGCGTTGGGAGATGAAAGCAACAACCAGACAATGCAGTTGAAAGGGGAATGTTTGCATCACCAGGTGCATGTGTTAGTCGATTCTGGTGCTTCACACAATTTCATTCACCCTTCTGTGGTAAAGAAAGCTAAAGCTACTGTACAGTCTATTAAGCCAGTCAAAGTAAGGTTGGCAAGTGGCTATATCATGGAAACCAAGGGAAAGGTACAGATAACAATCAAACTTCAGCAATATGAGCTAACTACACAGTATTATGTTCTACCTATTTCAGGTTGTGAGGTTATTCTAGGAGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

711

Amino Acids

79.1

Weight (kDa)

7.42

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 355 - 481 3.2e-10 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 368 - 456 1.9e-11 Retrotransposon gag protein
gag-asp_proteas PF13975 630 - 709 1.3e-07 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 631 - 708 8.3e-07 Aspartyl protease
RVP_2 PF08284 632 - 708 1.4e-06 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020125)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19792 FvH4_4g07791
pyrus_communis pycom13g26120 pycom16g15860
rosa_laevigata RLG00000022349
rosa_roxburghii Rroxscaffold_3G00238350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1524
AasI GACNNNNNNGTC 1 cut(s) 493
Acc16I TGCGCA 1 cut(s) 708
AccB7I CCANNNNNTGG 2 cut(s) 680, 1837
AccBSI CCGCTC 1 cut(s) 1793
AccI GTMKAC 1 cut(s) 854
AciI CCGC 1 cut(s) 1793
AclWI GGATC 5 cut(s) 221, 265, 286, 1022, 1035
AcoI YGGCCR 2 cut(s) 3, 714
AcsI RAATTY 4 cut(s) 623, 724, 1004, 1077
AcuI CTGAAG 2 cut(s) 221, 2042
AdeI CACNNNGTG 2 cut(s) 850, 1897
AfaI GTAC 4 cut(s) 146, 662, 1974, 2040
AfiI CCNNNNNNNGG 5 cut(s) 275, 680, 1837, 1948, 2102
AhdI GACNNNNNGTC 1 cut(s) 1141
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 3 cut(s) 171, 748, 1893
AjuI GAANNNNNNNTTGG 2 cut(s) 1085, 1117
Alw21I GWGCWC 5 cut(s) 102, 199, 688, 1498, 1648
Alw26I GTCTC 2 cut(s) 573, 1507
Alw44I GTGCAC 1 cut(s) 684
AlwI GGATC 5 cut(s) 221, 265, 286, 1022, 1035
Ama87I CYCGRG 3 cut(s) 219, 321, 1566
AoxI GGCC 5 cut(s) 3, 23, 714, 1551, 1757
ApaI GGGCCC 1 cut(s) 1555
ApaLI GTGCAC 1 cut(s) 684
ApeKI GCWGC 4 cut(s) 107, 215, 386, 1238
ApoI RAATTY 4 cut(s) 623, 724, 1004, 1077
AseI ATTAAT 2 cut(s) 159, 1455
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 4 cut(s) 23, 1551, 1552, 1757
AsuHPI GGTGA 6 cut(s) 68, 496, 553, 1732, 1883, 1931
AsuNHI GCTAGC 1 cut(s) 2126
AvaI CYCGRG 3 cut(s) 219, 321, 1566
BaeGI GKGCMC 3 cut(s) 688, 1468, 1555
BaeI ACNNNNGTAYC 2 cut(s) 1493, 1526
BalI TGGCCA 2 cut(s) 5, 716
BamHI GGATCC 1 cut(s) 1027
BanII GRGCYC 5 cut(s) 199, 1315, 1498, 1555, 1648
BarI GAAGNNNNNNTAC 2 cut(s) 1734, 1766
BbsI GAAGAC 1 cut(s) 1618
Bbv12I GWGCWC 5 cut(s) 102, 199, 688, 1498, 1648
BbvI GCAGC 4 cut(s) 94, 202, 373, 1250
BccI CCATC 4 cut(s) 175, 322, 1134, 1711
BcgI CGANNNNNNTGC 2 cut(s) 1901, 1935
BciT130I CCWGG 3 cut(s) 173, 750, 1895
BclI TGATCA 1 cut(s) 1228
BcoDI GTCTC 2 cut(s) 573, 1507
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 7 cut(s) 377, 432, 1491, 1685, 2120, 2127, 2131
BfmI CTRYAG 3 cut(s) 83, 282, 1696
BisI GCNGC 4 cut(s) 108, 216, 387, 1239
BlsI GCNGC 4 cut(s) 109, 217, 388, 1240
Bme1390I CCNGG 3 cut(s) 173, 750, 1895
BmeRI GACNNNNNGTC 1 cut(s) 1141
BmeT110I CYCGRG 3 cut(s) 219, 321, 1566
BmgT120I GGNCC 4 cut(s) 23, 1551, 1552, 1757
BmiI GGNNCC 4 cut(s) 501, 562, 1029, 1553
BmrFI CCNGG 3 cut(s) 173, 750, 1895
BmrI ACTGGG 1 cut(s) 842
BmsI GCATC 4 cut(s) 218, 829, 1123, 1897
BmtI GCTAGC 1 cut(s) 2130
BmuI ACTGGG 1 cut(s) 842
BpiI GAAGAC 1 cut(s) 1618
BplI GAGNNNNNCTC 2 cut(s) 1115, 1147
BpmI CTGGAG 3 cut(s) 194, 252, 480
BpuEI CTTGAG 3 cut(s) 33, 233, 555
BsaBI GATNNNNATC 2 cut(s) 1457, 2048
BsaI GGTCTC 1 cut(s) 1507
BsaJI CCNNGG 2 cut(s) 748, 2028
BsaWI WCCGGW 1 cut(s) 1030
BsaXI ACNNNNNCTCC 2 cut(s) 933, 963
Bsc4I CCNNNNNNNGG 5 cut(s) 275, 680, 1837, 1948, 2102
Bse1I ACTGG 4 cut(s) 230, 848, 922, 1988
Bse8I GATNNNNATC 2 cut(s) 1457, 2048
BseBI CCWGG 3 cut(s) 173, 750, 1895
BseDI CCNNGG 2 cut(s) 748, 2028
BseGI GGATG 4 cut(s) 65, 314, 581, 820
BseJI GATNNNNATC 2 cut(s) 1457, 2048
BseLI CCNNNNNNNGG 5 cut(s) 275, 680, 1837, 1948, 2102
BseMII CTCAG 6 cut(s) 44, 125, 665, 1343, 1392, 1493
BseNI ACTGG 4 cut(s) 230, 848, 922, 1988
BseRI GAGGAG 2 cut(s) 1301, 1787
BseSI GKGCMC 3 cut(s) 688, 1468, 1555
BseXI GCAGC 4 cut(s) 94, 202, 373, 1250
BsgI GTGCAG 2 cut(s) 372, 1560
BshFI GGCC 5 cut(s) 5, 25, 716, 1553, 1759
BsiHKAI GWGCWC 5 cut(s) 102, 199, 688, 1498, 1648
BsiHKCI CYCGRG 3 cut(s) 219, 321, 1566
BsiSI CCGG 1 cut(s) 1031
BslFI GGGAC 1 cut(s) 1552
BslI CCNNNNNNNGG 5 cut(s) 275, 680, 1837, 1948, 2102
BsmAI GTCTC 2 cut(s) 573, 1507
BsmFI GGGAC 1 cut(s) 1552
BsnI GGCC 5 cut(s) 5, 25, 716, 1553, 1759
Bso31I GGTCTC 1 cut(s) 1507
BsoBI CYCGRG 3 cut(s) 219, 321, 1566
Bsp120I GGGCCC 1 cut(s) 1551
Bsp1286I GDGCHC 8 cut(s) 102, 199, 688, 1315, 1468, 1498, 1555, 1648
Bsp1407I TGTACA 1 cut(s) 1972
Bsp143I GATC 5 cut(s) 226, 257, 278, 1027, 1228
BspACI CCGC 1 cut(s) 1793
BspANI GGCC 5 cut(s) 5, 25, 716, 1553, 1759
BspCNI CTCAG 6 cut(s) 43, 124, 664, 1342, 1391, 1492
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 4 cut(s) 501, 562, 1029, 1553
BspOI GCTAGC 1 cut(s) 2130
BspPI GGATC 5 cut(s) 221, 265, 286, 1022, 1035
BspTNI GGTCTC 1 cut(s) 1507
BsrBI CCGCTC 1 cut(s) 1793
BsrGI TGTACA 1 cut(s) 1972
BsrI ACTGG 4 cut(s) 230, 848, 922, 1988
BssECI CCNNGG 2 cut(s) 748, 2028
BssMI GATC 5 cut(s) 226, 257, 278, 1027, 1228
BssNAI GTATAC 1 cut(s) 855
BssT1I CCWWGG 1 cut(s) 2028
Bst1107I GTATAC 1 cut(s) 855
Bst2UI CCWGG 3 cut(s) 173, 750, 1895
Bst4CI ACNGT 6 cut(s) 484, 1509, 1697, 1972, 1977, 2082
Bst6I CTCTTC 3 cut(s) 521, 1437, 1764
BstAPI GCANNNNNTGC 1 cut(s) 215
BstAUI TGTACA 1 cut(s) 1972
BstC8I GCNNGC 5 cut(s) 27, 1108, 1112, 1575, 2128
BstDEI CTNAG 8 cut(s) 30, 111, 489, 651, 1329, 1378, 1431, 1479
BstENI CCTNNNNNAGG 1 cut(s) 2100
BstF5I GGATG 4 cut(s) 65, 314, 581, 820
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 5 cut(s) 229, 260, 281, 1030, 1231
BstMAI GTCTC 2 cut(s) 573, 1507
BstMBI GATC 5 cut(s) 226, 257, 278, 1027, 1228
BstMWI GCNNNNNNNGC 9 cut(s) 215, 308, 386, 713, 869, 997, 1244, 1310, 2068
BstNI CCWGG 3 cut(s) 173, 750, 1895
BstNSI RCATGY 4 cut(s) 940, 1114, 1422, 1904
BstSCI CCNGG 3 cut(s) 171, 748, 1893
BstSFI CTRYAG 3 cut(s) 83, 282, 1696
BstSLI GKGCMC 3 cut(s) 688, 1468, 1555
BstV1I GCAGC 4 cut(s) 94, 202, 373, 1250
BstV2I GAAGAC 1 cut(s) 1618
BstX2I RGATCY 4 cut(s) 226, 257, 278, 1027
BstYI RGATCY 4 cut(s) 226, 257, 278, 1027
BstZ17I GTATAC 1 cut(s) 855
BsuRI GGCC 5 cut(s) 5, 25, 716, 1553, 1759
BtgZI GCGATG 3 cut(s) 341, 1202, 1683
BtsCI GGATG 4 cut(s) 65, 314, 581, 820
BtsI GCAGTG 2 cut(s) 36, 102
BtsIMutI CAGTG 7 cut(s) 36, 102, 237, 855, 1275, 1661, 1712
Cac8I GCNNGC 5 cut(s) 27, 1108, 1112, 1575, 2128
CciI TCATGA 1 cut(s) 468
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 4 cut(s) 23, 1551, 1552, 1757
CsiI ACCWGGT 1 cut(s) 1893
Csp6I GTAC 4 cut(s) 145, 661, 1973, 2039
CviQI GTAC 4 cut(s) 145, 661, 1973, 2039
DdeI CTNAG 8 cut(s) 30, 111, 489, 651, 1329, 1378, 1431, 1479
DpnI GATC 5 cut(s) 228, 259, 280, 1029, 1230
DpnII GATC 5 cut(s) 226, 257, 278, 1027, 1228
DraIII CACNNNGTG 2 cut(s) 850, 1897
DrdI GACNNNNNNGTC 1 cut(s) 493
DriI GACNNNNNGTC 1 cut(s) 1141
DseDI GACNNNNNNGTC 1 cut(s) 493
EaeI YGGCCR 2 cut(s) 3, 714
Eam1104I CTCTTC 3 cut(s) 521, 1437, 1764
Eam1105I GACNNNNNGTC 1 cut(s) 1141
EarI CTCTTC 3 cut(s) 521, 1437, 1764
Ecl136II GAGCTC 3 cut(s) 197, 1496, 1646
Eco130I CCWWGG 1 cut(s) 2028
Eco24I GRGCYC 5 cut(s) 199, 1315, 1498, 1555, 1648
Eco31I GGTCTC 1 cut(s) 1507
Eco53kI GAGCTC 3 cut(s) 197, 1496, 1646
Eco57I CTGAAG 2 cut(s) 221, 2042
Eco88I CYCGRG 3 cut(s) 219, 321, 1566
EcoICRI GAGCTC 3 cut(s) 197, 1496, 1646
EcoNI CCTNNNNNAGG 1 cut(s) 2100
EcoO109I RGGNCCY 4 cut(s) 23, 1551, 1552, 1757
EcoRI GAATTC 1 cut(s) 1004
EcoRII CCWGG 3 cut(s) 171, 748, 1893
EcoT14I CCWWGG 1 cut(s) 2028
EcoT22I ATGCAT 2 cut(s) 166, 1116
EcoT38I GRGCYC 5 cut(s) 199, 1315, 1498, 1555, 1648
ErhI CCWWGG 1 cut(s) 2028
FaqI GGGAC 1 cut(s) 1552
FbaI TGATCA 1 cut(s) 1228
FblI GTMKAC 1 cut(s) 854
Fnu4HI GCNGC 4 cut(s) 108, 216, 387, 1239
FokI GGATG 4 cut(s) 52, 301, 588, 807
FriOI GRGCYC 5 cut(s) 199, 1315, 1498, 1555, 1648
Fsp4HI GCNGC 4 cut(s) 108, 216, 387, 1239
FspBI CTAG 7 cut(s) 377, 432, 1491, 1685, 2120, 2127, 2131
FspI TGCGCA 1 cut(s) 708
GlaI GCGC 1 cut(s) 708
GluI GCNGC 4 cut(s) 108, 216, 387, 1239
GsuI CTGGAG 3 cut(s) 194, 252, 480
HaeIII GGCC 5 cut(s) 5, 25, 716, 1553, 1759
HapII CCGG 1 cut(s) 1031
HhaI GCGC 1 cut(s) 709
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 8 cut(s) 88, 152, 305, 410, 1255, 1367, 1540, 1913
HpaII CCGG 1 cut(s) 1031
HphI GGTGA 6 cut(s) 68, 496, 553, 1732, 1883, 1931
Hpy166II GTNNAC 9 cut(s) 36, 145, 350, 686, 855, 927, 1214, 1293, 1780
Hpy188III TCNNGA 6 cut(s) 269, 459, 469, 1082, 1512, 1634
Hpy8I GTNNAC 9 cut(s) 36, 145, 350, 686, 855, 927, 1214, 1293, 1780
Hpy99I CGWCG 1 cut(s) 1513
HpyAV CCTTC 4 cut(s) 196, 1441, 1565, 1953
HpyCH4III ACNGT 6 cut(s) 484, 1509, 1697, 1972, 1977, 2082
HpyF10VI GCNNNNNNNGC 9 cut(s) 215, 308, 386, 713, 869, 997, 1244, 1310, 2068
HpyF3I CTNAG 8 cut(s) 30, 111, 489, 651, 1329, 1378, 1431, 1479
HspAI GCGC 1 cut(s) 707
Ksp22I TGATCA 1 cut(s) 1228
Kzo9I GATC 5 cut(s) 226, 257, 278, 1027, 1228
LmnI GCTCC 3 cut(s) 671, 1273, 2123
Lsp1109I GCAGC 4 cut(s) 94, 202, 373, 1250
LweI GCATC 4 cut(s) 218, 829, 1123, 1897
MabI ACCWGGT 1 cut(s) 1893
MaeI CTAG 7 cut(s) 377, 432, 1491, 1685, 2120, 2127, 2131
MaeIII GTNAC 5 cut(s) 89, 119, 411, 484, 1749
MalI GATC 5 cut(s) 228, 259, 280, 1029, 1230
MbiI CCGCTC 1 cut(s) 1793
MboI GATC 5 cut(s) 226, 257, 278, 1027, 1228
MboII GAAGA 5 cut(s) 538, 1097, 1454, 1623, 1781
MflI RGATCY 4 cut(s) 226, 257, 278, 1027
MhlI GDGCHC 8 cut(s) 102, 199, 688, 1315, 1468, 1498, 1555, 1648
MlsI TGGCCA 2 cut(s) 5, 716
MluNI TGGCCA 2 cut(s) 5, 716
MlyI GAGTC 6 cut(s) 97, 161, 299, 419, 1376, 1534
MmeI TCCRAC 7 cut(s) 256, 270, 477, 495, 976, 1333, 1705
Mox20I TGGCCA 2 cut(s) 5, 716
Mph1103I ATGCAT 2 cut(s) 166, 1116
MscI TGGCCA 2 cut(s) 5, 716
MseI TTAA 5 cut(s) 159, 1394, 1455, 1799, 1983
Msp20I TGGCCA 2 cut(s) 5, 716
MspI CCGG 1 cut(s) 1031
MspR9I CCNGG 3 cut(s) 173, 750, 1895
MvaI CCWGG 3 cut(s) 173, 750, 1895
MwoI GCNNNNNNNGC 9 cut(s) 215, 308, 386, 713, 869, 997, 1244, 1310, 2068
NdeII GATC 5 cut(s) 226, 257, 278, 1027, 1228
NheI GCTAGC 1 cut(s) 2126
NlaIV GGNNCC 4 cut(s) 501, 562, 1029, 1553
NmeAIII GCCGAG 1 cut(s) 1651
NmuCI GTSAC 4 cut(s) 89, 119, 411, 484
NsbI TGCGCA 1 cut(s) 708
NsiI ATGCAT 2 cut(s) 166, 1116
NspI RCATGY 4 cut(s) 940, 1114, 1422, 1904
PaeI GCATGC 1 cut(s) 1114
PaeR7I CTCGAG 3 cut(s) 219, 321, 1566
PagI TCATGA 1 cut(s) 468
PfeI GAWTC 2 cut(s) 1255, 1913
PflMI CCANNNNNTGG 2 cut(s) 680, 1837
PkrI GCNGC 4 cut(s) 109, 217, 388, 1240
PleI GAGTC 6 cut(s) 96, 160, 299, 418, 1375, 1534
PpsI GAGTC 6 cut(s) 96, 160, 299, 418, 1375, 1534
PshBI ATTAAT 2 cut(s) 159, 1455
PsiI TTATAA 1 cut(s) 1524
Psp124BI GAGCTC 3 cut(s) 199, 1498, 1648
Psp6I CCWGG 3 cut(s) 171, 748, 1893
PspGI CCWGG 3 cut(s) 171, 748, 1893
PspN4I GGNNCC 4 cut(s) 501, 562, 1029, 1553
PspOMI GGGCCC 1 cut(s) 1551
PspPI GGNCC 4 cut(s) 23, 1551, 1552, 1757
PspXI VCTCGAGB 3 cut(s) 219, 321, 1566
PsuI RGATCY 4 cut(s) 226, 257, 278, 1027
RsaI GTAC 4 cut(s) 146, 662, 1974, 2040
RsaNI GTAC 4 cut(s) 145, 661, 1973, 2039
SacI GAGCTC 3 cut(s) 199, 1498, 1648
SaqAI TTAA 5 cut(s) 159, 1394, 1455, 1799, 1983
SatI GCNGC 4 cut(s) 108, 216, 387, 1239
Sau3AI GATC 5 cut(s) 226, 257, 278, 1027, 1228
Sau96I GGNCC 4 cut(s) 23, 1551, 1552, 1757
SchI GAGTC 6 cut(s) 97, 161, 299, 419, 1376, 1534
ScrFI CCNGG 3 cut(s) 173, 750, 1895
SduI GDGCHC 8 cut(s) 102, 199, 688, 1315, 1468, 1498, 1555, 1648
SexAI ACCWGGT 1 cut(s) 1893
SfaNI GCATC 4 cut(s) 218, 829, 1123, 1897
SfcI CTRYAG 3 cut(s) 83, 282, 1696
Sfr274I CTCGAG 3 cut(s) 219, 321, 1566
SlaI CTCGAG 3 cut(s) 219, 321, 1566
SmlI CTYRAG 6 cut(s) 48, 219, 248, 321, 570, 1566
SmoI CTYRAG 6 cut(s) 48, 219, 248, 321, 570, 1566
SpeI ACTAGT 1 cut(s) 431
SphI GCATGC 1 cut(s) 1114
SsiI CCGC 1 cut(s) 1793
SspMI CTAG 7 cut(s) 377, 432, 1491, 1685, 2120, 2127, 2131
SstI GAGCTC 3 cut(s) 199, 1498, 1648
StyD4I CCNGG 3 cut(s) 171, 748, 1893
StyI CCWWGG 1 cut(s) 2028
TaaI ACNGT 6 cut(s) 484, 1509, 1697, 1972, 1977, 2082
TaqI TCGA 7 cut(s) 220, 322, 1249, 1511, 1567, 1648, 1911
TatI WGTACW 2 cut(s) 660, 1972
TfiI GAWTC 2 cut(s) 1255, 1913
Tru1I TTAA 5 cut(s) 159, 1394, 1455, 1799, 1983
Tru9I TTAA 5 cut(s) 159, 1394, 1455, 1799, 1983
TscAI CASTG 7 cut(s) 43, 109, 237, 855, 1275, 1661, 1719
TseFI GTSAC 4 cut(s) 89, 119, 411, 484
TseI GCWGC 4 cut(s) 107, 215, 386, 1238
Tsp45I GTSAC 4 cut(s) 89, 119, 411, 484
TspRI CASTG 7 cut(s) 43, 109, 237, 855, 1275, 1661, 1719
Van91I CCANNNNNTGG 2 cut(s) 680, 1837
VneI GTGCAC 1 cut(s) 684
VspI ATTAAT 2 cut(s) 159, 1455
XagI CCTNNNNNAGG 1 cut(s) 2100
XapI RAATTY 4 cut(s) 623, 724, 1004, 1077
XceI RCATGY 4 cut(s) 940, 1114, 1422, 1904
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XhoI CTCGAG 3 cut(s) 219, 321, 1566
XmiI GTMKAC 1 cut(s) 854
XspI CTAG 7 cut(s) 377, 432, 1491, 1685, 2120, 2127, 2131
Zsp2I ATGCAT 2 cut(s) 166, 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.