transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g19792 FvH4_4g07791 |
| pyrus_communis | pycom13g26120 pycom16g15860 |
| rosa_laevigata | RLG00000022349 |
| rosa_roxburghii | Rroxscaffold_3G00238350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 188, 248 |
| AcsI | RAATTY | 2 cut(s) | 75, 293 |
| AlwI | GGATC | 2 cut(s) | 188, 248 |
| ApoI | RAATTY | 2 cut(s) | 75, 293 |
| AsuHPI | GGTGA | 1 cut(s) | 174 |
| AsuII | TTCGAA | 1 cut(s) | 291 |
| BccI | CCATC | 1 cut(s) | 124 |
| BlpI | GCTNAGC | 1 cut(s) | 279 |
| BmsI | GCATC | 1 cut(s) | 120 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 279 |
| Bpu14I | TTCGAA | 1 cut(s) | 291 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 243, 273 |
| Bse1I | ACTGG | 1 cut(s) | 257 |
| BseGI | GGATG | 1 cut(s) | 116 |
| BseMII | CTCAG | 1 cut(s) | 270 |
| BseNI | ACTGG | 1 cut(s) | 257 |
| Bsp119I | TTCGAA | 1 cut(s) | 291 |
| Bsp143I | GATC | 2 cut(s) | 193, 253 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 279 |
| BspCNI | CTCAG | 1 cut(s) | 271 |
| BspPI | GGATC | 2 cut(s) | 188, 248 |
| BspT104I | TTCGAA | 1 cut(s) | 291 |
| BsrI | ACTGG | 1 cut(s) | 257 |
| BssMI | GATC | 2 cut(s) | 193, 253 |
| BstBI | TTCGAA | 1 cut(s) | 291 |
| BstDEI | CTNAG | 2 cut(s) | 279, 309 |
| BstF5I | GGATG | 1 cut(s) | 116 |
| BstKTI | GATC | 2 cut(s) | 196, 256 |
| BstMBI | GATC | 2 cut(s) | 193, 253 |
| BstX2I | RGATCY | 1 cut(s) | 253 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 264 |
| BstYI | RGATCY | 1 cut(s) | 253 |
| BtsCI | GGATG | 1 cut(s) | 116 |
| CviAII | CATG | 2 cut(s) | 37, 127 |
| CviJI | RGCY | 3 cut(s) | 201, 268, 278 |
| CviKI_1 | RGCY | 3 cut(s) | 201, 268, 278 |
| DdeI | CTNAG | 2 cut(s) | 279, 309 |
| DpnI | GATC | 2 cut(s) | 195, 255 |
| DpnII | GATC | 2 cut(s) | 193, 253 |
| EcoRI | GAATTC | 1 cut(s) | 293 |
| FaeI | CATG | 2 cut(s) | 40, 130 |
| FatI | CATG | 2 cut(s) | 36, 126 |
| FauNDI | CATATG | 1 cut(s) | 187 |
| FokI | GGATG | 1 cut(s) | 103 |
| Hin1II | CATG | 2 cut(s) | 40, 130 |
| HphI | GGTGA | 1 cut(s) | 174 |
| HpyF3I | CTNAG | 2 cut(s) | 279, 309 |
| Hsp92II | CATG | 2 cut(s) | 40, 130 |
| Kzo9I | GATC | 2 cut(s) | 193, 253 |
| LpnPI | CCDG | 1 cut(s) | 270 |
| LweI | GCATC | 1 cut(s) | 120 |
| MalI | GATC | 2 cut(s) | 195, 255 |
| MboI | GATC | 2 cut(s) | 193, 253 |
| MflI | RGATCY | 1 cut(s) | 253 |
| MluCI | AATT | 4 cut(s) | 7, 75, 149, 293 |
| MnlI | CCTC | 4 cut(s) | 73, 156, 177, 212 |
| MseI | TTAA | 1 cut(s) | 6 |
| NdeI | CATATG | 1 cut(s) | 187 |
| NdeII | GATC | 2 cut(s) | 193, 253 |
| NlaIII | CATG | 2 cut(s) | 40, 130 |
| NspV | TTCGAA | 1 cut(s) | 291 |
| PsuI | RGATCY | 1 cut(s) | 253 |
| SaqAI | TTAA | 1 cut(s) | 6 |
| Sau3AI | GATC | 2 cut(s) | 193, 253 |
| SetI | ASST | 5 cut(s) | 22, 34, 65, 85, 310 |
| SfaNI | GCATC | 1 cut(s) | 120 |
| SfuI | TTCGAA | 1 cut(s) | 291 |
| SgeI | CNNG | 8 cut(s) | 49, 139, 173, 210, 250, 269, 286, 296 |
| Sse9I | AATT | 4 cut(s) | 7, 75, 149, 293 |
| TaqI | TCGA | 2 cut(s) | 192, 291 |
| TasI | AATT | 4 cut(s) | 7, 75, 149, 293 |
| Tru1I | TTAA | 1 cut(s) | 6 |
| Tru9I | TTAA | 1 cut(s) | 6 |
| TspDTI | ATGAA | 2 cut(s) | 227, 236 |
| XapI | RAATTY | 2 cut(s) | 75, 293 |