transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g19792 FvH4_4g07791 |
| pyrus_communis | pycom13g26120 pycom16g15860 |
| rosa_laevigata | RLG00000022349 |
| rosa_roxburghii | Rroxscaffold_3G00238350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 434 |
| AciI | CCGC | 1 cut(s) | 302 |
| AclWI | GGATC | 2 cut(s) | 154, 494 |
| AcuI | CTGAAG | 1 cut(s) | 425 |
| AfaI | GTAC | 1 cut(s) | 331 |
| AgsI | TTSAA | 4 cut(s) | 94, 107, 246, 316 |
| Alw26I | GTCTC | 1 cut(s) | 64 |
| AlwI | GGATC | 2 cut(s) | 154, 494 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 403 |
| AspLEI | GCGC | 3 cut(s) | 112, 189, 435 |
| AsuHPI | GGTGA | 1 cut(s) | 54 |
| BauI | CACGAG | 1 cut(s) | 356 |
| BbsI | GAAGAC | 1 cut(s) | 323 |
| BccI | CCATC | 1 cut(s) | 394 |
| BceAI | ACGGC | 1 cut(s) | 349 |
| BclI | TGATCA | 1 cut(s) | 85 |
| BcoDI | GTCTC | 1 cut(s) | 64 |
| BfoI | RGCGCY | 1 cut(s) | 113 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 370 |
| BmsI | GCATC | 1 cut(s) | 351 |
| BpiI | GAAGAC | 1 cut(s) | 323 |
| BpmI | CTGGAG | 1 cut(s) | 111 |
| BsaWI | WCCGGW | 1 cut(s) | 208 |
| Bse1I | ACTGG | 1 cut(s) | 267 |
| Bse3DI | GCAATG | 1 cut(s) | 9 |
| BseGI | GGATG | 1 cut(s) | 235 |
| BseMI | GCAATG | 1 cut(s) | 9 |
| BseMII | CTCAG | 3 cut(s) | 29, 57, 437 |
| BseNI | ACTGG | 1 cut(s) | 267 |
| BsiSI | CCGG | 1 cut(s) | 209 |
| BslFI | GGGAC | 1 cut(s) | 14 |
| BsmAI | GTCTC | 1 cut(s) | 64 |
| BsmFI | GGGAC | 1 cut(s) | 14 |
| BsmI | GAATGC | 1 cut(s) | 304 |
| Bsp143I | GATC | 4 cut(s) | 85, 159, 272, 499 |
| BspACI | CCGC | 1 cut(s) | 302 |
| BspCNI | CTCAG | 3 cut(s) | 28, 58, 438 |
| BspHI | TCATGA | 1 cut(s) | 334 |
| BspPI | GGATC | 2 cut(s) | 154, 494 |
| BsrDI | GCAATG | 1 cut(s) | 9 |
| BsrI | ACTGG | 1 cut(s) | 267 |
| BssMI | GATC | 4 cut(s) | 85, 159, 272, 499 |
| BssSI | CACGAG | 1 cut(s) | 356 |
| Bst2BI | CACGAG | 1 cut(s) | 356 |
| Bst4CI | ACNGT | 1 cut(s) | 242 |
| BstDEI | CTNAG | 3 cut(s) | 15, 66, 446 |
| BstEII | GGTNACC | 1 cut(s) | 278 |
| BstF5I | GGATG | 1 cut(s) | 235 |
| BstH2I | RGCGCY | 1 cut(s) | 113 |
| BstHHI | GCGC | 3 cut(s) | 112, 189, 435 |
| BstKTI | GATC | 4 cut(s) | 88, 162, 275, 502 |
| BstMAI | GTCTC | 1 cut(s) | 64 |
| BstMBI | GATC | 4 cut(s) | 85, 159, 272, 499 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 370 |
| BstPI | GGTNACC | 1 cut(s) | 278 |
| BstV2I | GAAGAC | 1 cut(s) | 323 |
| BtsCI | GGATG | 1 cut(s) | 235 |
| BtsIMutI | CAGTG | 1 cut(s) | 401 |
| CaiI | CAGNNNCTG | 1 cut(s) | 403 |
| CciI | TCATGA | 1 cut(s) | 334 |
| CfoI | GCGC | 3 cut(s) | 112, 189, 435 |
| Csp6I | GTAC | 1 cut(s) | 330 |
| CviAII | CATG | 1 cut(s) | 335 |
| CviJI | RGCY | 2 cut(s) | 43, 373 |
| CviKI_1 | RGCY | 2 cut(s) | 43, 373 |
| CviQI | GTAC | 1 cut(s) | 330 |
| DdeI | CTNAG | 3 cut(s) | 15, 66, 446 |
| DpnI | GATC | 4 cut(s) | 87, 161, 274, 501 |
| DpnII | GATC | 4 cut(s) | 85, 159, 272, 499 |
| Eco57I | CTGAAG | 1 cut(s) | 425 |
| Eco91I | GGTNACC | 1 cut(s) | 278 |
| EcoO65I | GGTNACC | 1 cut(s) | 278 |
| FaeI | CATG | 1 cut(s) | 338 |
| FaiI | YATR | 3 cut(s) | 193, 336, 416 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 308, 340 |
| FaqI | GGGAC | 1 cut(s) | 14 |
| FatI | CATG | 1 cut(s) | 334 |
| FbaI | TGATCA | 1 cut(s) | 85 |
| FokI | GGATG | 1 cut(s) | 242 |
| FspI | TGCGCA | 1 cut(s) | 434 |
| GlaI | GCGC | 3 cut(s) | 111, 188, 434 |
| GsuI | CTGGAG | 1 cut(s) | 111 |
| HaeII | RGCGCY | 1 cut(s) | 113 |
| HapII | CCGG | 1 cut(s) | 209 |
| HhaI | GCGC | 3 cut(s) | 112, 189, 435 |
| Hin1II | CATG | 1 cut(s) | 338 |
| Hin6I | GCGC | 3 cut(s) | 110, 187, 433 |
| HinP1I | GCGC | 3 cut(s) | 110, 187, 433 |
| HinfI | GANTC | 1 cut(s) | 151 |
| HpaII | CCGG | 1 cut(s) | 209 |
| HphI | GGTGA | 1 cut(s) | 54 |
| Hpy188I | TCNGA | 3 cut(s) | 293, 447, 530 |
| Hpy188III | TCNNGA | 3 cut(s) | 128, 335, 358 |
| HpyCH4III | ACNGT | 1 cut(s) | 242 |
| HpyCH4IV | ACGT | 1 cut(s) | 137 |
| HpyCH4V | TGCA | 2 cut(s) | 238, 494 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 370 |
| HpyF3I | CTNAG | 3 cut(s) | 15, 66, 446 |
| HpySE526I | ACGT | 1 cut(s) | 137 |
| Hsp92II | CATG | 1 cut(s) | 338 |
| HspAI | GCGC | 3 cut(s) | 110, 187, 433 |
| Ksp22I | TGATCA | 1 cut(s) | 85 |
| Kzo9I | GATC | 4 cut(s) | 85, 159, 272, 499 |
| LpnPI | CCDG | 8 cut(s) | 45, 78, 141, 177, 188, 222, 248, 261 |
| LweI | GCATC | 1 cut(s) | 351 |
| MaeII | ACGT | 1 cut(s) | 137 |
| MaeIII | GTNAC | 3 cut(s) | 278, 399, 467 |
| MalI | GATC | 4 cut(s) | 87, 161, 274, 501 |
| MboI | GATC | 4 cut(s) | 85, 159, 272, 499 |
| MboII | GAAGA | 3 cut(s) | 244, 328, 418 |
| MluCI | AATT | 2 cut(s) | 204, 221 |
| MmeI | TCCRAC | 1 cut(s) | 207 |
| MnlI | CCTC | 4 cut(s) | 131, 135, 298, 435 |
| MspI | CCGG | 1 cut(s) | 209 |
| Mva1269I | GAATGC | 1 cut(s) | 304 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 370 |
| NdeII | GATC | 4 cut(s) | 85, 159, 272, 499 |
| NlaIII | CATG | 1 cut(s) | 338 |
| NmuCI | GTSAC | 2 cut(s) | 399, 467 |
| NsbI | TGCGCA | 1 cut(s) | 434 |
| PagI | TCATGA | 1 cut(s) | 334 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 354 |
| PctI | GAATGC | 1 cut(s) | 304 |
| PfeI | GAWTC | 1 cut(s) | 151 |
| PspEI | GGTNACC | 1 cut(s) | 278 |
| PstNI | CAGNNNCTG | 1 cut(s) | 403 |
| RsaI | GTAC | 1 cut(s) | 331 |
| RsaNI | GTAC | 1 cut(s) | 330 |
| Sau3AI | GATC | 4 cut(s) | 85, 159, 272, 499 |
| SetI | ASST | 4 cut(s) | 49, 67, 123, 140 |
| SfaNI | GCATC | 1 cut(s) | 351 |
| Sse9I | AATT | 2 cut(s) | 204, 221 |
| SsiI | CCGC | 1 cut(s) | 302 |
| SspI | AATATT | 1 cut(s) | 461 |
| TaaI | ACNGT | 1 cut(s) | 242 |
| TaiI | ACGT | 1 cut(s) | 140 |
| TaqI | TCGA | 1 cut(s) | 141 |
| TasI | AATT | 2 cut(s) | 204, 221 |
| TfiI | GAWTC | 1 cut(s) | 151 |
| TscAI | CASTG | 1 cut(s) | 408 |
| TseFI | GTSAC | 2 cut(s) | 399, 467 |
| Tsp45I | GTSAC | 2 cut(s) | 399, 467 |
| TspDTI | ATGAA | 3 cut(s) | 234, 311, 351 |
| TspRI | CASTG | 1 cut(s) | 408 |