FvH4_2g19811

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018377
Physical Location & Seq
Reverse (-)
16752930 .. 16754450
1521 bp
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UTR
Exon/CDS
Intron
FvH4_2g19811.t1

Sequence Viewer

Length: 423 bp
ATGGCTGATGGAACTGCTAACCAAGAAGGTCTTACAATTCCCTTAATGTCTTGGAAGAACAACCTGAAAGCACTTCTGGTGGATCCATCATCTACCTGTACACTAATTGGGAAGGCATATCTCACGAATTACGGTGTAAAAACTGAGGCTGTGGACAATGGAGATGTTGCCATTACTCTGCTTAATGAGGGAGCCAGTTTCACTGTGATTCTCGCAGACATGCATATGCGTGAAATGAATGGAGCGCAGTTTGCTACGCAGCTTCGGAGCAGGGGAGTACAGACCAGGCTGCTTGGTATGTCAACAATGTTTAGAGAACGTGAGAAAGAAGAGTTTCTGGCAGCTGGGGGTGATGGCTTTATTGAGAAGCCTCTTCATCCTTCCAAGTTTGTTCCAATCCTGCAAGAGCTGGATAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Response_reg

Protein Analysis

141

Amino Acids

15.35

Weight (kDa)

5.14

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 25 - 131 4e-14 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018377)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19811
rosa_chinensis RchiOBHm_Chr6g0285531
rosa_laevigata RLG00000012630
rosa_roxburghii Rroxscaffold_7G00183050
rosa_rugosa Rorug06G0175200
rosa_samantha Rh6AG286800 Rh6BG288000 Rh6CG289200 Rh6DG282000
rosa_wichuraiana Rw6G024650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 77, 90
AfaI GTAC 2 cut(s) 100, 279
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 3 cut(s) 262, 344, 409
AluI AGCT 3 cut(s) 262, 344, 409
AlwI GGATC 2 cut(s) 77, 90
ApeKI GCWGC 3 cut(s) 259, 289, 341
Asp700I GAANNNNTTC 1 cut(s) 333
AspLEI GCGC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 362
BamHI GGATCC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 271, 276, 353
BccI CCATC 3 cut(s) 2, 94, 347
BciT130I CCWGG 1 cut(s) 286
BisI GCNGC 3 cut(s) 260, 290, 342
BlsI GCNGC 3 cut(s) 261, 291, 343
Bme1390I CCNGG 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 84, 193
BmrFI CCNGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 271, 276, 353
BseYI CCCAGC 1 cut(s) 344
Bsp1407I TGTACA 1 cut(s) 98
Bsp143I GATC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 84, 193
BspPI GGATC 2 cut(s) 77, 90
BsrGI TGTACA 1 cut(s) 98
BsrI ACTGG 1 cut(s) 195
BssMI GATC 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 134, 205
Bst6I CTCTTC 2 cut(s) 324, 378
BstAUI TGTACA 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 376
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 284
BstV1I GCAGC 3 cut(s) 271, 276, 353
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 201
CfoI GCGC 1 cut(s) 247
Csp6I GTAC 2 cut(s) 99, 278
CviAII CATG 1 cut(s) 220
CviJI RGCY 9 cut(s) 5, 149, 194, 262, 289, 344, 357, 370, 409
CviKI_1 RGCY 9 cut(s) 5, 149, 194, 262, 289, 344, 357, 370, 409
CviQI GTAC 2 cut(s) 99, 278
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 324, 378
EarI CTCTTC 2 cut(s) 324, 378
EcoRII CCWGG 1 cut(s) 284
EcoT22I ATGCAT 1 cut(s) 225
FaeI CATG 1 cut(s) 223
FaiI YATR 5 cut(s) 118, 221, 225, 227, 299
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 1 cut(s) 219
FauNDI CATATG 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 260, 290, 342
FokI GGATG 1 cut(s) 363
Fsp4HI GCNGC 3 cut(s) 260, 290, 342
GlaI GCGC 1 cut(s) 246
GluI GCNGC 3 cut(s) 260, 290, 342
GsaI CCCAGC 1 cut(s) 348
HhaI GCGC 1 cut(s) 247
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 1 cut(s) 208
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 3 cut(s) 101, 154, 303
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 3 cut(s) 101, 154, 303
HpyAV CCTTC 3 cut(s) 20, 106, 390
HpyCH4III ACNGT 2 cut(s) 134, 205
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 223, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 191, 242, 267
Lsp1109I GCAGC 3 cut(s) 271, 276, 353
MaeII ACGT 1 cut(s) 319
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 3 cut(s) 67, 341, 365
MflI RGATCY 1 cut(s) 82
MluCI AATT 4 cut(s) 36, 105, 127, 418
MnlI CCTC 3 cut(s) 139, 181, 381
Mph1103I ATGCAT 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 3 cut(s) 44, 183, 421
MslI CAYNNNNRTG 2 cut(s) 224, 228
MspA1I CMGCKG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeI CATATG 1 cut(s) 225
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 2 cut(s) 84, 193
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 3 cut(s) 261, 291, 343
Psp6I CCWGG 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 84, 193
PsuI RGATCY 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 2 cut(s) 100, 279
RsaNI GTAC 2 cut(s) 99, 278
RseI CAYNNNNRTG 2 cut(s) 224, 228
SaqAI TTAA 3 cut(s) 44, 183, 421
SatI GCNGC 3 cut(s) 260, 290, 342
Sau3AI GATC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 286
SetI ASST 7 cut(s) 31, 66, 98, 264, 322, 346, 411
SmiMI CAYNNNNRTG 2 cut(s) 224, 228
Sse9I AATT 4 cut(s) 36, 105, 127, 418
StyD4I CCNGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 134, 205
TaiI ACGT 1 cut(s) 322
TasI AATT 4 cut(s) 36, 105, 127, 418
TatI WGTACW 2 cut(s) 98, 277
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 3 cut(s) 44, 183, 421
Tru9I TTAA 3 cut(s) 44, 183, 421
TscAI CASTG 1 cut(s) 208
TseI GCWGC 3 cut(s) 259, 289, 341
TspDTI ATGAA 2 cut(s) 251, 365
TspRI CASTG 1 cut(s) 208
XceI RCATGY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 333
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.