Rorug06G0175200

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0018377
Physical Location & Seq
Forward (+)
27423499 .. 27425543
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0175200.1

Sequence Viewer

Length: 252 bp
ATGGCTGAAGCTCTAGTTGACACTCTCTTGCAGCATTTGGCTTCCATCACCCTTGACAAGGTTGAAAGAGAGCTGAGACCGGTTGTAGGTGTTGACACAGAAGTTGCAAACATTACTCGCAATCTTGAAGCTGTTCGAGCTGTGCTTGAGGATGCTGAGAGCAGACAACTGAAGGAGGACAATATGGGCTACATGTACTTTGGCACAGTCAAGATATATGGTTCTGAGGCTGCCCTTATAAACAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Response_reg

Protein Analysis

83

Amino Acids

9.27

Weight (kDa)

4.58

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 61 8.1e-07 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018377)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19811
rosa_chinensis RchiOBHm_Chr6g0285531
rosa_laevigata RLG00000012630
rosa_roxburghii Rroxscaffold_7G00183050
rosa_rugosa Rorug06G0175200
rosa_samantha Rh6AG286800 Rh6BG288000 Rh6CG289200 Rh6DG282000
rosa_wichuraiana Rw6G024650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
AcuI CTGAAG 2 cut(s) 27, 191
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 58, 86
AflIII ACRYGT 1 cut(s) 192
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 65, 128
AluBI AGCT 4 cut(s) 11, 73, 131, 140
AluI AGCT 4 cut(s) 11, 73, 131, 140
Alw26I GTCTC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 31, 230
AsiGI ACCGGT 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 40
BbvI GCAGC 2 cut(s) 43, 217
BccI CCATC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 14
BisI GCNGC 2 cut(s) 32, 231
BlsI GCNGC 2 cut(s) 33, 232
BmsI GCATC 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 86
Bse118I RCCGGY 1 cut(s) 79
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 58, 86
BseMII CTCAG 3 cut(s) 65, 147, 216
BseXI GCAGC 2 cut(s) 43, 217
BshTI ACCGGT 1 cut(s) 79
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 58, 86
BsmAI GTCTC 1 cut(s) 70
Bso31I GGTCTC 1 cut(s) 70
BspCNI CTCAG 3 cut(s) 66, 148, 217
BspTNI GGTCTC 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 74, 156, 225
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNSI RCATGY 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 43, 217
BtsCI GGATG 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 79
Csp6I GTAC 1 cut(s) 196
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 1 cut(s) 193
CviJI RGCY 8 cut(s) 5, 11, 41, 73, 131, 140, 189, 230
CviKI_1 RGCY 8 cut(s) 5, 11, 41, 73, 131, 140, 189, 230
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 3 cut(s) 74, 156, 225
Eco31I GGTCTC 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 27, 191
EcoNI CCTNNNNNAGG 1 cut(s) 56
FaeI CATG 1 cut(s) 196
FaiI YATR 5 cut(s) 185, 194, 217, 219, 239
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 32, 231
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 32, 231
FspBI CTAG 1 cut(s) 14
GluI GCNGC 2 cut(s) 32, 231
HapII CCGG 1 cut(s) 80
Hin1II CATG 1 cut(s) 196
HincII GTYRAC 2 cut(s) 19, 94
HindII GTYRAC 2 cut(s) 19, 94
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 19, 94
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 125, 211
Hpy8I GTNNAC 2 cut(s) 19, 94
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 2 cut(s) 31, 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 3 cut(s) 74, 156, 225
Hsp92II CATG 1 cut(s) 196
LpnPI CCDG 1 cut(s) 93
Lsp1109I GCAGC 2 cut(s) 43, 217
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 14
MluCI AATT 1 cut(s) 244
MnlI CCTC 3 cut(s) 142, 169, 220
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 1 cut(s) 250
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 196
NspI RCATGY 1 cut(s) 196
PciI ACATGT 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 79
PkrI GCNGC 2 cut(s) 33, 232
PscI ACATGT 1 cut(s) 192
PsiI TTATAA 1 cut(s) 239
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 2 cut(s) 32, 231
SetI ASST 6 cut(s) 13, 63, 75, 91, 133, 142
SfaNI GCATC 1 cut(s) 142
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 136
TasI AATT 1 cut(s) 244
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TseI GCWGC 2 cut(s) 31, 230
XagI CCTNNNNNAGG 1 cut(s) 56
XceI RCATGY 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.